LLPS-Art-1038
PSRP2
▼ OVERVIEW
| Status: | Reviewed |
| Protein Name: | 30S ribosomal protein 2, chloroplastic; Chloroplastic small ribosomal subunit protein cS22; Plastid-specific 30S ribosomal protein 2, chloroplastic; PSRP-2 |
| Gene Name: | PSRP2, At3g52150, F4F15.260 |
| Ensembl Gene: | AT3G52150 |
| Ensembl Protein: | AT3G52150.2 |
| Organism: | Arabidopsis thaliana |
| Taxa ID: | 3702 |
| LLPS Type: | Others |
▼ Classification
Condensates:
| Condensate | Description | Tissue/Cell | PMIDs |
|---|---|---|---|
| Nucleolus | "...Comparative analysis revealed that 562 proteins were consistently identified in both experimental data sets." | 3 weeks-old Arabidopsis thaliana plants | 29104584 |
▼ FUNCTION
| Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus. May have a role in the recruitment of stored chloroplast mRNAs for active protein synthesis (By similarity). Bind single strand DNA (ssDNA) and RNA in vitro. Exhibits RNA chaperone activity. Regulates negatively resistance responses to abiotic stresses during seed germination (e.g. salt, dehydration, and low temperature) and seedling growth (e.g. salt) (PubMed:24220572). |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | AT3G52150.2 | AT3G52150.2 |
| Ensembl | AT3G52150.1 | AT3G52150.1 |
| UniProt | Q8VYM4, PSRP2_ARATH, B9DG26, Q9SUZ0 | |
| GeneBank | AY070427, AK316998, CP002686, AL049711, AY133746 | AAM91680.1, AAL49922.1, CAB41335.1, AEE78904.1, AEE78903.1, BAH19693.1 |
| RefSeq | NM_001035764.1, NM_115074.5 | NP_001030841.1, NP_566958.3 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MATFLTNVVS IKPTIFSFQS ESFTPLHTRV NVFSSKPFPS LAGTFSRSSR TRFIPYAVTE 60 61 TEEKPAALDP SSEAARRVYI GNIPRTVTNE QLTKLVEEHG AVEKVQVMYD KYSGRSRRFG 120 121 FATMKSVEDA NAVVEKLNGN TVEGREIKVN ITEKPIASSP DLSVLQSEDS AFVDSPYKVY 180 181 VGNLAKTVTK EMLENLFSEK GKVVSAKVSR VPGTSKSTGF GFVTFSSEED VEAAIVALNN 240 241 SLLEGQKIRV NKA 253 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGGCGACTT TCCTAACAAA TGTTGTTTCA ATCAAACCTA CAATCTTCTC ATTCCAGTCC 60 61 GAATCCTTCA CTCCTTTGCA TACACGGGTC AATGTATTCT CCTCGAAACC CTTTCCTTCT 120 121 CTCGCTGGAA CTTTCTCCCG GAGCTCTAGA ACGAGATTCA TTCCTTATGC TGTAACGGAG 180 181 ACGGAAGAAA AACCCGCCGC TTTGGACCCT AGTTCAGAAG CTGCCAGGCG TGTGTATATC 240 241 GGTAACATAC CCAGGACGGT GACCAATGAG CAGCTCACTA AACTTGTTGA AGAACACGGT 300 301 GCTGTTGAAA AAGTTCAGGT GATGTATGAT AAGTATTCAG GAAGAAGCCG TCGATTTGGG 360 361 TTTGCTACAA TGAAATCAGT TGAAGATGCT AATGCTGTGG TTGAGAAATT GAATGGCAAT 420 421 ACCGTTGAAG GGCGTGAGAT AAAGGTTAAC ATTACAGAGA AACCTATAGC ATCATCACCT 480 481 GATTTATCAG TTCTTCAGTC TGAGGATTCA GCATTTGTAG ATAGCCCTTA CAAAGTGTAT 540 541 GTTGGGAATC TAGCAAAGAC TGTTACAAAA GAGATGCTTG AGAATTTGTT TTCTGAGAAA 600 601 GGGAAAGTAG TAAGTGCTAA GGTTTCAAGA GTACCTGGAA CTTCCAAATC CACCGGGTTT 660 661 GGATTCGTTA CGTTTTCTTC TGAAGAAGAT GTGGAAGCAG CCATTGTTGC TCTTAACAAT 720 721 TCGTTGCTGG AAGGACAGAA GATTCGGGTG AATAAGGCTT AG 762 |
▼ KEYWORD
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | Chloroplast | |
Cellular Component | Chloroplast envelope | |
Cellular Component | Chloroplast stroma | |
Cellular Component | Chloroplast thylakoid membrane | |
Cellular Component | Ribonucleoprotein complex | |
Cellular Component | Ribosome | |
Cellular Component | Thylakoid | |
Molecular Function | RNA binding | |
Molecular Function | RRNA binding | |
Molecular Function | Single-stranded DNA binding | |
Biological Process | Chloroplast rRNA processing | |
Biological Process | Negative regulation of response to salt stress | |
Biological Process | Negative regulation of response to water deprivation | |
Biological Process | Regulation of seed germination | |
Biological Process | Regulation of seedling development | |
Biological Process | Response to cold | |
Biological Process | Response to salt stress | |
Biological Process | Response to water deprivation |
▼ ANNOTATION
| Disorder | ||||
| IUPred2A | ||||
| Physicochemical | ||||
| Compute pI/Mw | AAindex | |||
| Localization | ||||
| COMPARTMENTS | ||||
| Expression | ||||
| ArrayExpress | ||||
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Arl-0309 | Arabidopsis lyrata | 97.52 | 3e-165 | 473 |
| LLPS-Brn-2537 | Brassica napus | 80.0 | 1e-137 | 394 |
| LLPS-Brr-1935 | Brassica rapa | 80.0 | 5e-138 | 395 |
| LLPS-Bro-1531 | Brassica oleracea | 77.27 | 7e-130 | 375 |
| LLPS-Mae-0691 | Manihot esculenta | 77.16 | 3e-104 | 310 |
| LLPS-Vir-0377 | Vigna radiata | 76.71 | 1e-73 | 228 |
| LLPS-Glm-1606 | Glycine max | 76.67 | 1e-96 | 291 |
| LLPS-Prp-1258 | Prunus persica | 74.87 | 7e-97 | 291 |
| LLPS-Pot-0688 | Populus trichocarpa | 74.75 | 2e-100 | 301 |
| LLPS-Mua-0898 | Musa acuminata | 71.7 | 6e-77 | 237 |
| LLPS-Nia-0633 | Nicotiana attenuata | 69.86 | 2e-97 | 293 |
| LLPS-Via-0198 | Vigna angularis | 69.08 | 4e-95 | 286 |
| LLPS-Thc-1266 | Theobroma cacao | 68.18 | 4e-100 | 299 |
| LLPS-Gor-2193 | Gossypium raimondii | 67.98 | 3e-92 | 279 |
| LLPS-Coc-0066 | Corchorus capsularis | 65.0 | 3e-96 | 290 |
| LLPS-Sob-0137 | Sorghum bicolor | 63.04 | 4e-74 | 233 |
| LLPS-Phv-0782 | Phaseolus vulgaris | 62.93 | 2e-95 | 286 |
| LLPS-Hea-2620 | Helianthus annuus | 62.29 | 8e-94 | 283 |
| LLPS-Lep-1102 | Leersia perrieri | 62.16 | 5e-73 | 229 |
| LLPS-Met-0825 | Medicago truncatula | 62.07 | 2e-87 | 266 |
| LLPS-Cus-2357 | Cucumis sativus | 61.97 | 6e-92 | 279 |
| LLPS-Orm-1027 | Oryza meridionalis | 61.62 | 3e-73 | 231 |
| LLPS-Brd-0673 | Brachypodium distachyon | 61.49 | 1e-66 | 214 |
| LLPS-Tra-0638 | Triticum aestivum | 61.41 | 7e-71 | 224 |
| LLPS-Viv-0468 | Vitis vinifera | 61.32 | 8e-92 | 278 |
| LLPS-Orr-0895 | Oryza rufipogon | 61.08 | 5e-73 | 229 |
| LLPS-Orbr-0182 | Oryza brachyantha | 61.08 | 4e-73 | 230 |
| LLPS-Ors-1981 | Oryza sativa | 61.08 | 5e-73 | 229 |
| LLPS-Sei-0612 | Setaria italica | 60.54 | 1e-72 | 229 |
| LLPS-Orni-0665 | Oryza nivara | 60.44 | 1e-70 | 224 |
| LLPS-Orp-1395 | Oryza punctata | 60.34 | 2e-67 | 215 |
| LLPS-Hov-0826 | Hordeum vulgare | 60.12 | 1e-63 | 208 |
| LLPS-Orgl-0158 | Oryza glumaepatula | 58.16 | 2e-70 | 223 |
| LLPS-Orb-0993 | Oryza barthii | 58.16 | 4e-70 | 221 |
| LLPS-Dac-1385 | Daucus carota | 57.4 | 5e-84 | 258 |
| LLPS-Zem-2281 | Zea mays | 54.41 | 6e-61 | 199 |
| LLPS-Ori-0770 | Oryza indica | 51.35 | 1e-54 | 182 |
| LLPS-Amt-1864 | Amborella trichopoda | 46.11 | 5e-42 | 150 |
| LLPS-Org-0806 | Oryza glaberrima | 43.9 | 2e-13 | 71.2 |
| LLPS-Tru-0540 | Triticum urartu | 43.59 | 6e-17 | 80.9 |
| LLPS-Php-1684 | Physcomitrella patens | 41.81 | 3e-32 | 127 |
| LLPS-Sol-0925 | Solanum lycopersicum | 41.49 | 1e-34 | 131 |
| LLPS-Sot-0867 | Solanum tuberosum | 39.04 | 3e-36 | 136 |
| LLPS-Sem-1369 | Selaginella moellendorffii | 37.66 | 4e-13 | 69.3 |
| LLPS-Ran-1183 | Rattus norvegicus | 37.5 | 6e-07 | 54.3 |
| LLPS-Mup-1068 | Mustela putorius furo | 37.5 | 6e-07 | 53.9 |
| LLPS-Aim-2582 | Ailuropoda melanoleuca | 37.5 | 2e-06 | 52.8 |
| LLPS-Ova-0412 | Ovis aries | 37.5 | 6e-07 | 54.3 |
| LLPS-Paa-3212 | Papio anubis | 37.5 | 6e-07 | 54.3 |
| LLPS-Mal-2087 | Mandrillus leucophaeus | 37.5 | 6e-07 | 53.9 |
| LLPS-Tar-2527 | Takifugu rubripes | 37.5 | 3e-07 | 55.1 |
| LLPS-Xim-0027 | Xiphophorus maculatus | 37.5 | 3e-07 | 54.7 |
| LLPS-Bot-3027 | Bos taurus | 37.5 | 6e-07 | 54.3 |
| LLPS-Dio-0764 | Dipodomys ordii | 37.5 | 6e-07 | 54.3 |
| LLPS-Gaa-0136 | Gasterosteus aculeatus | 37.5 | 3e-07 | 55.1 |
| LLPS-Fud-1586 | Fukomys damarensis | 37.5 | 6e-07 | 54.3 |
| LLPS-Ora-1046 | Ornithorhynchus anatinus | 37.5 | 3e-07 | 54.7 |
| LLPS-Chs-3703 | Chlorocebus sabaeus | 37.5 | 6e-07 | 53.9 |
| LLPS-Maf-0352 | Macaca fascicularis | 37.5 | 6e-07 | 53.9 |
| LLPS-Sah-0778 | Sarcophilus harrisii | 37.5 | 3e-07 | 55.1 |
| LLPS-Cea-4399 | Cercocebus atys | 37.5 | 6e-07 | 53.9 |
| LLPS-Sus-0113 | Sus scrofa | 37.5 | 6e-07 | 53.9 |
| LLPS-Orl-1089 | Oryzias latipes | 37.5 | 3e-07 | 54.7 |
| LLPS-Cas-0281 | Carlito syrichta | 37.5 | 5e-07 | 54.3 |
| LLPS-Ict-0153 | Ictidomys tridecemlineatus | 37.5 | 6e-07 | 54.3 |
| LLPS-Nol-0453 | Nomascus leucogenys | 37.5 | 6e-07 | 53.9 |
| LLPS-Cap-1285 | Cavia porcellus | 37.5 | 6e-07 | 54.3 |
| LLPS-Ten-0131 | Tetraodon nigroviridis | 37.5 | 3e-07 | 55.1 |
| LLPS-Mam-2804 | Macaca mulatta | 37.5 | 6e-07 | 53.9 |
| LLPS-Otg-1196 | Otolemur garnettii | 37.5 | 6e-07 | 53.9 |
| LLPS-Orn-2604 | Oreochromis niloticus | 37.5 | 3e-07 | 54.7 |
| LLPS-Rhb-2483 | Rhinopithecus bieti | 37.5 | 6e-07 | 53.9 |
| LLPS-Lac-0500 | Latimeria chalumnae | 37.5 | 5e-07 | 54.3 |
| LLPS-Scm-2077 | Scophthalmus maximus | 37.5 | 2e-07 | 55.1 |
| LLPS-Fec-4755 | Felis catus | 37.5 | 6e-07 | 53.9 |
| LLPS-Pof-3249 | Poecilia formosa | 37.5 | 4e-07 | 54.3 |
| LLPS-Urm-0246 | Ursus maritimus | 37.5 | 6e-07 | 53.9 |
| LLPS-Loa-2227 | Loxodonta africana | 37.5 | 6e-07 | 54.3 |
| LLPS-Man-3264 | Macaca nemestrina | 37.5 | 6e-07 | 53.9 |
| LLPS-Scf-1457 | Scleropages formosus | 32.81 | 8e-19 | 90.1 |
| LLPS-Meg-0778 | Meleagris gallopavo | 32.29 | 1e-18 | 89.4 |
| LLPS-Chc-0847 | Chondrus crispus | 31.82 | 6e-20 | 91.7 |
| LLPS-Pes-0657 | Pelodiscus sinensis | 30.9 | 4e-20 | 92.8 |
| LLPS-Gas-0218 | Galdieria sulphuraria | 30.68 | 5e-19 | 88.2 |
| LLPS-Dos-1237 | Dothistroma septosporum | 30.5 | 6e-21 | 95.9 |
| LLPS-Kop-1408 | Komagataella pastoris | 28.98 | 2e-19 | 89.7 |
| LLPS-Usm-0414 | Ustilago maydis | 28.49 | 2e-19 | 91.3 |
| LLPS-Spr-0839 | Sporisorium reilianum | 27.93 | 5e-19 | 89.7 |
| LLPS-Asg-1359 | Ashbya gossypii | 26.67 | 1e-19 | 90.9 |
| LLPS-Sac-0547 | Saccharomyces cerevisiae | 25.84 | 1e-18 | 88.2 |