LLPS-Art-0335
At3g23620
▼ OVERVIEW
| Status: | Reviewed |
| Protein Name: | Ribosome production factor 2 homolog; Brix domain-containing protein 1 homolog; Ribosome biogenesis protein RPF2 homolog |
| Gene Name: | At3g23620, MDB19.11 |
| Ensembl Gene: | AT3G23620 |
| Ensembl Protein: | AT3G23620.1 |
| Organism: | Arabidopsis thaliana |
| Taxa ID: | 3702 |
| LLPS Type: | Others |
▼ Classification
Condensates:
| Condensate | Description | Tissue/Cell | PMIDs |
|---|---|---|---|
| Nucleolus | "...Comparative analysis revealed that 562 proteins were consistently identified in both experimental data sets." | 3 weeks-old Arabidopsis thaliana plants | 29104584 |
| Nucleolus | "...Here, we describe the first proteomic analysis of plant nucleoli, in which we have identified 217 proteins." | Protoplasts | 15496452 |
| Nucleolus | "...We identified 1602 proteins in the nucleolar and 2544 proteins in the nuclear fraction with an overlap of 1429 proteins." | Arabidopsis thaliana cells | 26980300 |
| P-body | Predicted from orthologs | N/A | (View) |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | AT3G23620.1 | AT3G23620.1 |
| UniProt | Q9LUG5, RPF2_ARATH, Q8LCK0 | |
| GeneBank | AB023036, CP002686, AY086550, AY122939, AY070410 | AEE76787.1, AAM67472.1, BAB02781.1, AAM63614.1, AAL49906.1 |
| RefSeq | NM_113266.4 | NP_566734.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MMEIRTPKTG KAKRVLESRA PKLVETGKKT LILHGTKTSA TLSSVMTELY RLKKGGAIRY 60 61 SRRNENIRPF ESGGETSLEF FSQKTDCSIF VYGSHTKKRP DNLVLGRMYD HQVYDLIEVG 120 121 IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL 180 181 TGLDRAYVCS AISPTKVFLT HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM 240 241 KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH 300 301 KEETVAKKMK VSSE 314 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGATGGAAA TACGAACTCC GAAGACTGGC AAAGCCAAGC GTGTTCTCGA AAGCCGAGCT 60 61 CCTAAGTTGG TTGAAACTGG GAAGAAGACG TTGATACTTC ATGGAACAAA GACGAGTGCT 120 121 ACACTTAGCT CTGTAATGAC GGAACTCTAC CGTTTGAAGA AGGGAGGTGC CATCAGATAT 180 181 TCAAGGAGGA ATGAGAATAT TAGGCCTTTC GAGAGTGGAG GTGAAACTTC ATTAGAGTTC 240 241 TTCTCTCAGA AAACAGATTG TAGCATTTTT GTGTATGGTT CTCACACGAA GAAACGACCT 300 301 GACAATCTTG TACTTGGGAG AATGTATGAT CACCAAGTCT ATGATCTTAT AGAAGTTGGG 360 361 ATTGAGAACT TTAAATCCTT GCGGGCGTTT TCGTATGACA AGAAATTCGC ACCTCATGAA 420 421 GGAACAAAGC CTTTCATTTG CTTTATTGGT GAAGGTTTTG AGAATGTATC AGAGCTTAAG 480 481 CATCTCAAAG AAGTCCTCAC TGATCTTTTT CGTGGCGAGG TTGTGGATAA TCTAAATCTT 540 541 ACTGGTTTAG ACCGCGCTTA CGTATGTTCA GCTATATCCC CAACAAAGGT TTTCCTTACT 600 601 CATTGCGCAT TGAAGCTTAA AAAGTCAGGA TCCATTGTTC CGAGAATGGA GCTTGTTGAA 660 661 GTCGGTCCAT CCATGGACTT GGTTATCAGG CGTAATCGTC TTCCTAACGA TAGCTTAATG 720 721 AAAGAAGCAA TGAGAACATC CAAGGATAAG CCTAAGAAGA AGGAGAAAAA CGTTGATCAA 780 781 GATGCAGTAC TAGGGAAGAC TGGGAAGATT TATATGCCTG ATCAGAAGCT GAAAGAAATG 840 841 AAACTGTTCG ATAAATCTAA GGGATCGAAG AGAGAGCGGA AAGACGCTAA GCTTAAGCAT 900 901 AAGGAAGAGA CTGTTGCCAA AAAGATGAAG GTGTCTTCTG AGTGA 945 |
▼ ANNOTATION
| Disorder | ||||
| IUPred2A | ||||
| Domain | ||||
| SMART | LCR-eXXXplorer | CDD | ||
| PTM | ||||
| EPSD | ||||
| Physicochemical | ||||
| Compute pI/Mw | AAindex | |||
| Function | ||||
| PIRSF | ||||
| Localization | ||||
| COMPARTMENTS | ||||
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Arl-1413 | Arabidopsis lyrata | 94.57 | 0.0 | 579 |
| LLPS-Brr-2007 | Brassica rapa | 83.54 | 4e-179 | 505 |
| LLPS-Bro-2749 | Brassica oleracea | 83.23 | 3e-179 | 505 |
| LLPS-Brn-0263 | Brassica napus | 83.23 | 6e-179 | 504 |
| LLPS-Coc-1696 | Corchorus capsularis | 72.93 | 2e-166 | 473 |
| LLPS-Gor-0659 | Gossypium raimondii | 72.93 | 7e-166 | 471 |
| LLPS-Thc-0906 | Theobroma cacao | 71.34 | 5e-162 | 462 |
| LLPS-Met-0397 | Medicago truncatula | 70.93 | 3e-153 | 440 |
| LLPS-Mae-0664 | Manihot esculenta | 70.79 | 2e-159 | 455 |
| LLPS-Cus-0530 | Cucumis sativus | 70.78 | 3e-154 | 442 |
| LLPS-Nia-0930 | Nicotiana attenuata | 70.57 | 3e-153 | 439 |
| LLPS-Viv-0727 | Vitis vinifera | 69.84 | 1e-160 | 458 |
| LLPS-Via-0052 | Vigna angularis | 69.52 | 3e-152 | 437 |
| LLPS-Vir-0044 | Vigna radiata | 69.52 | 4e-153 | 439 |
| LLPS-Glm-0473 | Glycine max | 69.03 | 6e-152 | 436 |
| LLPS-Sot-0892 | Solanum tuberosum | 68.77 | 2e-155 | 445 |
| LLPS-Phv-0881 | Phaseolus vulgaris | 68.71 | 4e-150 | 431 |
| LLPS-Sol-0221 | Solanum lycopersicum | 68.45 | 2e-154 | 442 |
| LLPS-Hea-0592 | Helianthus annuus | 68.18 | 4e-150 | 432 |
| LLPS-Pot-0345 | Populus trichocarpa | 67.83 | 4e-151 | 434 |
| LLPS-Dac-0662 | Daucus carota | 67.43 | 9e-153 | 438 |
| LLPS-Mua-1268 | Musa acuminata | 66.03 | 9e-149 | 431 |
| LLPS-Orgl-0206 | Oryza glumaepatula | 65.59 | 1e-145 | 422 |
| LLPS-Amt-0009 | Amborella trichopoda | 65.45 | 4e-142 | 411 |
| LLPS-Orbr-0869 | Oryza brachyantha | 65.29 | 2e-136 | 396 |
| LLPS-Orp-1769 | Oryza punctata | 65.27 | 5e-146 | 421 |
| LLPS-Sei-1435 | Setaria italica | 65.27 | 1e-143 | 415 |
| LLPS-Prp-0461 | Prunus persica | 64.38 | 2e-148 | 429 |
| LLPS-Sob-0412 | Sorghum bicolor | 64.31 | 3e-143 | 414 |
| LLPS-Orm-0576 | Oryza meridionalis | 63.99 | 3e-142 | 411 |
| LLPS-Orr-0175 | Oryza rufipogon | 63.99 | 3e-143 | 414 |
| LLPS-Org-0788 | Oryza glaberrima | 63.99 | 3e-143 | 414 |
| LLPS-Ors-0250 | Oryza sativa | 63.99 | 3e-143 | 414 |
| LLPS-Ori-0191 | Oryza indica | 63.99 | 3e-143 | 414 |
| LLPS-Orb-0127 | Oryza barthii | 63.99 | 3e-143 | 414 |
| LLPS-Orni-0020 | Oryza nivara | 63.99 | 3e-143 | 414 |
| LLPS-Zem-1522 | Zea mays | 63.67 | 1e-142 | 412 |
| LLPS-Brd-0289 | Brachypodium distachyon | 62.3 | 6e-139 | 403 |
| LLPS-Tra-1848 | Triticum aestivum | 61.78 | 8e-137 | 397 |
| LLPS-Tru-0037 | Triticum urartu | 61.74 | 1e-134 | 392 |
| LLPS-Hov-0849 | Hordeum vulgare | 61.74 | 3e-133 | 389 |
| LLPS-Lep-0277 | Leersia perrieri | 59.87 | 5e-131 | 382 |
| LLPS-Php-0066 | Physcomitrella patens | 54.58 | 3e-109 | 328 |
| LLPS-Sem-0707 | Selaginella moellendorffii | 52.68 | 1e-106 | 321 |
| LLPS-Cea-0069 | Cercocebus atys | 47.64 | 8e-56 | 188 |
| LLPS-Chr-0276 | Chlamydomonas reinhardtii | 47.19 | 2e-85 | 267 |
| LLPS-Man-0108 | Macaca nemestrina | 46.67 | 2e-51 | 177 |
| LLPS-Ran-1149 | Rattus norvegicus | 45.82 | 5e-70 | 226 |
| LLPS-Mum-0840 | Mus musculus | 45.82 | 2e-70 | 227 |
| LLPS-Gog-0606 | Gorilla gorilla | 45.64 | 8e-50 | 172 |
| LLPS-Tar-0053 | Takifugu rubripes | 45.16 | 3e-75 | 240 |
| LLPS-Eqc-2728 | Equus caballus | 45.09 | 2e-67 | 219 |
| LLPS-Mea-0112 | Mesocricetus auratus | 45.08 | 3e-22 | 96.3 |
| LLPS-Leo-0171 | Lepisosteus oculatus | 44.75 | 1e-68 | 223 |
| LLPS-Fud-2541 | Fukomys damarensis | 44.74 | 2e-69 | 225 |
| LLPS-Orl-0298 | Oryzias latipes | 44.52 | 4e-73 | 234 |
| LLPS-Mod-0755 | Monodelphis domestica | 44.44 | 2e-71 | 230 |
| LLPS-Scm-1419 | Scophthalmus maximus | 44.41 | 5e-67 | 219 |
| LLPS-Tut-0118 | Tursiops truncatus | 44.41 | 3e-69 | 224 |
| LLPS-Rhb-0529 | Rhinopithecus bieti | 44.36 | 4e-67 | 219 |
| LLPS-Orc-0049 | Oryctolagus cuniculus | 44.33 | 1e-69 | 226 |
| LLPS-Anp-1057 | Anas platyrhynchos | 44.28 | 5e-67 | 218 |
| LLPS-Tag-2139 | Taeniopygia guttata | 44.2 | 7e-66 | 216 |
| LLPS-Cap-0145 | Cavia porcellus | 44.08 | 4e-69 | 224 |
| LLPS-Poa-0439 | Pongo abelii | 44.08 | 4e-70 | 227 |
| LLPS-Mam-0286 | Macaca mulatta | 44.08 | 1e-70 | 228 |
| LLPS-Loa-0920 | Loxodonta africana | 44.08 | 9e-70 | 226 |
| LLPS-Paa-0392 | Papio anubis | 44.08 | 1e-70 | 228 |
| LLPS-Maf-0809 | Macaca fascicularis | 44.08 | 1e-70 | 228 |
| LLPS-Gaga-0157 | Gallus gallus | 44.0 | 3e-69 | 224 |
| LLPS-Meg-0493 | Meleagris gallopavo | 44.0 | 5e-69 | 224 |
| LLPS-Cas-0229 | Carlito syrichta | 43.75 | 2e-69 | 224 |
| LLPS-Hos-0598 | Homo sapiens | 43.75 | 3e-69 | 224 |
| LLPS-Pat-0570 | Pan troglodytes | 43.75 | 3e-69 | 224 |
| LLPS-Ova-2279 | Ovis aries | 43.75 | 1e-68 | 223 |
| LLPS-Caj-0714 | Callithrix jacchus | 43.75 | 4e-70 | 226 |
| LLPS-Myl-0388 | Myotis lucifugus | 43.68 | 4e-55 | 186 |
| LLPS-Orn-0078 | Oreochromis niloticus | 43.65 | 5e-70 | 226 |
| LLPS-Scf-0101 | Scleropages formosus | 43.61 | 2e-66 | 217 |
| LLPS-Cii-0674 | Ciona intestinalis | 43.57 | 1e-67 | 221 |
| LLPS-Dar-2849 | Danio rerio | 43.52 | 6e-68 | 221 |
| LLPS-Bot-0087 | Bos taurus | 43.48 | 6e-66 | 216 |
| LLPS-Nol-1693 | Nomascus leucogenys | 43.42 | 2e-69 | 224 |
| LLPS-Mup-1250 | Mustela putorius furo | 43.42 | 9e-68 | 222 |
| LLPS-Caf-1720 | Canis familiaris | 43.09 | 5e-67 | 219 |
| LLPS-Pof-0754 | Poecilia formosa | 43.09 | 3e-68 | 222 |
| LLPS-Urm-0329 | Ursus maritimus | 43.09 | 1e-67 | 220 |
| LLPS-Sus-1593 | Sus scrofa | 43.09 | 1e-68 | 223 |
| LLPS-Dio-0494 | Dipodomys ordii | 43.01 | 1e-11 | 65.9 |
| LLPS-Osl-0207 | Ostreococcus lucimarinus | 43.0 | 2e-72 | 233 |
| LLPS-Fia-0191 | Ficedula albicollis | 42.91 | 2e-65 | 214 |
| LLPS-Asm-3127 | Astyanax mexicanus | 42.81 | 7e-69 | 223 |
| LLPS-Otg-0087 | Otolemur garnettii | 42.76 | 9e-67 | 218 |
| LLPS-Sah-1310 | Sarcophilus harrisii | 42.76 | 4e-69 | 224 |
| LLPS-Mal-1391 | Mandrillus leucophaeus | 42.62 | 2e-47 | 167 |
| LLPS-Aon-1570 | Aotus nancymaae | 42.62 | 2e-64 | 211 |
| LLPS-Pap-1811 | Pan paniscus | 42.43 | 2e-64 | 212 |
| LLPS-Aim-0984 | Ailuropoda melanoleuca | 42.43 | 2e-64 | 211 |
| LLPS-Pes-0449 | Pelodiscus sinensis | 42.38 | 1e-66 | 218 |
| LLPS-Gaa-1078 | Gasterosteus aculeatus | 42.21 | 5e-68 | 221 |
| LLPS-Anc-1832 | Anolis carolinensis | 42.16 | 1e-69 | 225 |
| LLPS-Cis-0107 | Ciona savignyi | 42.09 | 3e-65 | 214 |
| LLPS-Fec-2301 | Felis catus | 40.74 | 5e-63 | 210 |
| LLPS-Lac-0349 | Latimeria chalumnae | 40.14 | 1e-59 | 199 |
| LLPS-Xet-0176 | Xenopus tropicalis | 40.0 | 3e-64 | 211 |
| LLPS-Scj-0307 | Schizosaccharomyces japonicus | 39.47 | 2e-56 | 191 |
| LLPS-Gas-0163 | Galdieria sulphuraria | 38.83 | 3e-57 | 193 |
| LLPS-Xim-1200 | Xiphophorus maculatus | 38.49 | 3e-55 | 187 |
| LLPS-Scp-0204 | Schizosaccharomyces pombe | 37.79 | 5e-52 | 180 |
| LLPS-Icp-2549 | Ictalurus punctatus | 37.38 | 1e-50 | 176 |
| LLPS-Blg-0153 | Blumeria graminis | 37.29 | 4e-51 | 177 |
| LLPS-Crn-0662 | Cryptococcus neoformans | 37.29 | 1e-49 | 173 |
| LLPS-Scc-0736 | Schizosaccharomyces cryophilus | 37.12 | 7e-51 | 177 |
| LLPS-Abg-0282 | Absidia glauca | 37.1 | 1e-59 | 199 |
| LLPS-Tum-0869 | Tuber melanosporum | 36.88 | 5e-57 | 193 |
| LLPS-Cym-0017 | Cyanidioschyzon merolae | 36.42 | 7e-55 | 188 |
| LLPS-Asg-0391 | Ashbya gossypii | 36.08 | 4e-43 | 157 |
| LLPS-Miv-0222 | Microbotryum violaceum | 35.68 | 4e-28 | 116 |
| LLPS-Lem-0514 | Leptosphaeria maculans | 35.62 | 3e-49 | 173 |
| LLPS-Fuo-0607 | Fusarium oxysporum | 35.39 | 2e-49 | 173 |
| LLPS-Mao-0329 | Magnaporthe oryzae | 35.29 | 8e-47 | 166 |
| LLPS-Yal-0724 | Yarrowia lipolytica | 35.17 | 4e-43 | 156 |
| LLPS-Sac-0243 | Saccharomyces cerevisiae | 35.05 | 1e-40 | 150 |
| LLPS-Nec-0260 | Neurospora crassa | 35.05 | 3e-45 | 163 |
| LLPS-Map-0242 | Magnaporthe poae | 34.87 | 2e-47 | 168 |
| LLPS-Gag-0229 | Gaeumannomyces graminis | 34.85 | 5e-47 | 169 |
| LLPS-Kop-0235 | Komagataella pastoris | 34.77 | 7e-41 | 150 |
| LLPS-Fuv-0031 | Fusarium verticillioides | 34.74 | 2e-48 | 170 |
| LLPS-Zyt-0715 | Zymoseptoria tritici | 34.64 | 2e-40 | 149 |
| LLPS-Cae-0380 | Caenorhabditis elegans | 34.52 | 1e-40 | 149 |
| LLPS-Phn-0487 | Phaeosphaeria nodorum | 34.43 | 2e-46 | 166 |
| LLPS-Drm-1265 | Drosophila melanogaster | 34.42 | 2e-49 | 173 |
| LLPS-Trr-0081 | Trichoderma reesei | 34.21 | 6e-46 | 164 |
| LLPS-Coo-0567 | Colletotrichum orbiculare | 34.0 | 5e-47 | 167 |
| LLPS-Pyt-0262 | Pyrenophora teres | 33.99 | 2e-45 | 162 |
| LLPS-Asc-0321 | Aspergillus clavatus | 33.65 | 4e-45 | 162 |
| LLPS-Trv-0009 | Trichoderma virens | 33.33 | 7e-47 | 166 |
| LLPS-Cogr-1250 | Colletotrichum graminicola | 33.33 | 7e-48 | 169 |
| LLPS-Mel-0024 | Melampsora laricipopulina | 32.94 | 4e-40 | 150 |
| LLPS-Cog-0716 | Colletotrichum gloeosporioides | 32.82 | 3e-33 | 130 |
| LLPS-Beb-0165 | Beauveria bassiana | 32.46 | 7e-45 | 161 |
| LLPS-Asn-0670 | Aspergillus nidulans | 32.43 | 2e-43 | 157 |
| LLPS-Fus-0866 | Fusarium solani | 32.42 | 7e-42 | 153 |
| LLPS-Pytr-0641 | Pyrenophora triticirepentis | 32.33 | 4e-45 | 162 |
| LLPS-Ast-0802 | Aspergillus terreus | 32.01 | 5e-41 | 158 |
| LLPS-Ict-0362 | Ictidomys tridecemlineatus | 31.91 | 8e-31 | 122 |
| LLPS-Nef-0382 | Neosartorya fischeri | 31.75 | 4e-44 | 159 |
| LLPS-Put-0209 | Puccinia triticina | 31.48 | 1e-40 | 151 |
| LLPS-Asni-0034 | Aspergillus niger | 31.29 | 2e-39 | 147 |
| LLPS-Asfu-1124 | Aspergillus fumigatus | 31.11 | 1e-42 | 155 |
| LLPS-Pug-1089 | Puccinia graminis | 30.81 | 1e-38 | 146 |
| LLPS-Aso-0356 | Aspergillus oryzae | 30.5 | 6e-45 | 162 |
| LLPS-Asf-0475 | Aspergillus flavus | 30.5 | 5e-45 | 162 |
| LLPS-Ved-0301 | Verticillium dahliae | 30.43 | 2e-38 | 144 |
| LLPS-Dos-0246 | Dothistroma septosporum | 29.97 | 3e-35 | 136 |
| LLPS-Spr-0765 | Sporisorium reilianum | 28.09 | 3e-32 | 129 |
| LLPS-Usm-0643 | Ustilago maydis | 28.01 | 3e-34 | 134 |