AAindex 
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Physicochemical Property | A | L | R | K | N | M | D | F | C | P | Q | S | E | T | G | W | H | Y | I | V |
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Alpha-ch chemical shifts | 4.35 | 4.17 | 4.38 | 4.36 | 4.75 | 4.52 | 4.76 | 4.66 | 4.65 | 4.44 | 4.37 | 4.50 | 4.29 | 4.35 | 3.97 | 4.70 | 4.63 | 4.60 | 3.95 | 3.95 |
Hydrophobicity index | 0.61 | 1.53 | 0.60 | 1.15 | 0.06 | 1.18 | 0.46 | 2.02 | 1.07 | 1.95 | 0 | 0.05 | 0.47 | 0.05 | 0.07 | 2.65 | 0.61 | 1.88 | 2.22 | 1.32 |
Signal sequence helical potential | 1.18 | 3.23 | 0.20 | 0.06 | 0.23 | 2.67 | 0.05 | 1.96 | 1.89 | 0.76 | 0.72 | 0.97 | 0.11 | 0.84 | 0.49 | 0.77 | 0.31 | 0.39 | 1.45 | 1.08 |
Membrane-buried preference parameters | 1.56 | 2.93 | 0.45 | 0.15 | 0.27 | 2.96 | 0.14 | 2.03 | 1.23 | 0.76 | 0.51 | 0.81 | 0.23 | 0.91 | 0.62 | 1.08 | 0.29 | 0.68 | 1.67 | 1.14 |
Conformational parameter of inner helix | 1 | 1 | 0.52 | 0.60 | 0.35 | 1 | 0.44 | 0.60 | 0.06 | 0.06 | 0.44 | 0.35 | 0.73 | 0.44 | 0.35 | 0.73 | 0.60 | 0.44 | 0.73 | 0.82 |
Conformational parameter of beta-structure | 0.77 | 0.83 | 0.72 | 0.55 | 0.55 | 0.98 | 0.65 | 0.98 | 0.65 | 0.55 | 0.72 | 0.55 | 0.55 | 0.83 | 0.65 | 0.77 | 0.83 | 0.83 | 0.98 | 0.98 |
Conformational parameter of beta-turn | 0.37 | 0.53 | 0.84 | 0.75 | 0.97 | 0.64 | 0.97 | 0.53 | 0.84 | 0.97 | 0.64 | 0.84 | 0.53 | 0.75 | 0.97 | 0.97 | 0.75 | 0.84 | 0.37 | 0.37 |
Average flexibility indices | 0.357 | 0.365 | 0.529 | 0.466 | 0.463 | 0.295 | 0.511 | 0.314 | 0.346 | 0.509 | 0.493 | 0.507 | 0.497 | 0.444 | 0.544 | 0.305 | 0.323 | 0.420 | 0.462 | 0.386 |
Residue volume | 52.6 | 102.0 | 109.1 | 105.1 | 75.7 | 97.7 | 68.4 | 113.9 | 68.3 | 73.6 | 89.7 | 54.9 | 84.7 | 71.2 | 36.3 | 135.4 | 91.9 | 116.2 | 102.0 | 85.1 |
Information value for accessibility; average fraction 35% | 16 | 145 | -70 | -141 | -74 | 124 | -78 | 189 | 168 | -20 | -73 | -70 | -106 | -38 | -13 | 145 | 50 | 53 | 151 | 123 |
Information value for accessibility; average fraction 23% | 44 | 108 | -68 | -188 | -72 | 121 | -91 | 148 | 90 | -36 | -117 | -60 | -139 | -54 | -8 | 163 | 47 | 22 | 100 | 117 |
Retention coefficient in TFA | 7.3 | 20.0 | -3.6 | -3.7 | -5.7 | 5.6 | -2.9 | 19.2 | -9.2 | 5.1 | -0.3 | -4.1 | -7.1 | 0.8 | -1.2 | 16.3 | -2.1 | 5.9 | 6.6 | 3.5 |
Retention coefficient in HFBA | 3.9 | 15.0 | 3.2 | -2.5 | -2.8 | 4.1 | -2.8 | 14.7 | -14.3 | 5.6 | 1.8 | -3.5 | -7.5 | 1.1 | -2.3 | 17.8 | 2.0 | 3.8 | 11.0 | 2.1 |
Transfer free energy to surface | -0.20 | -2.46 | -0.12 | -0.35 | 0.08 | -1.47 | -0.20 | -2.33 | -0.45 | -0.98 | 0.16 | -0.39 | -0.30 | -0.52 | 0 | -2.01 | -0.12 | -2.24 | -2.26 | -1.56 |
Apparent partial specific volume | 0.691 | 0.842 | 0.728 | 0.767 | 0.596 | 0.709 | 0.558 | 0.756 | 0.624 | 0.730 | 0.649 | 0.594 | 0.632 | 0.655 | 0.592 | 0.743 | 0.646 | 0.743 | 0.809 | 0.777 |
Alpha-nh chemical shifts | 8.249 | 8.423 | 8.274 | 8.408 | 8.747 | 8.418 | 8.410 | 8.228 | 8.312 | 0 | 8.411 | 8.380 | 8.368 | 8.236 | 8.391 | 8.094 | 8.415 | 8.183 | 8.195 | 8.436 |
Alpha-ch chemical shifts | 4.349 | 4.385 | 4.396 | 4.358 | 4.755 | 4.513 | 4.765 | 4.663 | 4.686 | 4.471 | 4.373 | 4.498 | 4.295 | 4.346 | 3.972 | 4.702 | 4.630 | 4.604 | 4.224 | 4.184 |
Spin-spin coupling constants 3JHalpha-NH | 6.5 | 6.5 | 6.9 | 6.5 | 7.5 | 0 | 7.0 | 9.4 | 7.7 | 0 | 6.0 | 6.5 | 7.0 | 6.9 | 5.6 | 0 | 8.0 | 6.8 | 7.0 | 7.0 |
Normalized frequency of alpha-helix | 0.486 | 0.420 | 0.262 | 0.402 | 0.193 | 0.417 | 0.288 | 0.318 | 0.200 | 0.208 | 0.418 | 0.200 | 0.538 | 0.272 | 0.120 | 0.462 | 0.400 | 0.161 | 0.370 | 0.379 |
Normalized frequency of extended structure | 0.288 | 0.400 | 0.362 | 0.265 | 0.229 | 0.375 | 0.271 | 0.318 | 0.533 | 0.340 | 0.327 | 0.354 | 0.262 | 0.388 | 0.312 | 0.231 | 0.200 | 0.429 | 0.411 | 0.495 |
Steric parameter | 0.52 | 0.98 | 0.68 | 0.68 | 0.76 | 0.78 | 0.76 | 0.70 | 0.62 | 0.36 | 0.68 | 0.53 | 0.68 | 0.50 | 0 | 0.70 | 0.70 | 0.70 | 1.02 | 0.76 |
Polarizability parameter | 0.046 | 0.186 | 0.291 | 0.219 | 0.134 | 0.221 | 0.105 | 0.290 | 0.128 | 0.131 | 0.180 | 0.062 | 0.151 | 0.108 | 0.000 | 0.409 | 0.230 | 0.298 | 0.186 | 0.140 |
Free energy of solution in water, kcal/mole | -0.368 | 1.07 | -1.03 | 0 | 0 | 0.656 | 2.06 | 1.06 | 4.53 | -2.24 | 0.731 | -0.524 | 1.77 | 0 | -0.525 | 1.60 | 0 | 4.91 | 0.791 | 0.401 |
The Chou-Fasman parameter of the coil conformation | 0.71 | 0.69 | 1.06 | 0.99 | 1.37 | 0.59 | 1.21 | 0.71 | 1.19 | 1.61 | 0.87 | 1.34 | 0.84 | 1.08 | 1.52 | 0.76 | 1.07 | 1.07 | 0.66 | 0.63 |
A parameter defined from the residuals obtained from the best correlation o | -0.118 | -0.052 | 0.124 | 0.032 | 0.289 | -0.258 | 0.048 | 0.015 | 0.083 | 0 | -0.105 | 0.225 | -0.245 | 0.166 | 0.104 | 0.158 | 0.138 | 0.094 | 0.230 | 0.513 |
The number of atoms in the side chain labelled 1+1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 2 | 0 | 1 | 1 | 1 | 2 | 2 |
The number of atoms in the side chain labelled 2+1 | 0 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 0 |
The number of atoms in the side chain labelled 3+1 | 0 | 0 | 1 | 1 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 1.5 | 1 | 1 | 0 | 0 |
The number of bonds in the longest chain | 0 | 2 | 5 | 4 | 2 | 3 | 2 | 4 | 1 | 0 | 3 | 1 | 3 | 1 | 0 | 5 | 3 | 5 | 2 | 1 |
A parameter of charge transfer capability | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
A parameter of charge transfer donor capability | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 |
Average volume of buried residue | 91.5 | 167.9 | 202.0 | 171.3 | 135.2 | 170.8 | 124.5 | 203.4 | 117.7 | 129.3 | 161.1 | 99.1 | 155.1 | 122.1 | 66.4 | 237.6 | 167.3 | 203.6 | 168.8 | 141.7 |
Residue accessible surface area in tripeptide | 115 | 170 | 225 | 200 | 160 | 185 | 150 | 210 | 135 | 145 | 180 | 115 | 190 | 140 | 75 | 255 | 195 | 230 | 175 | 155 |
Residue accessible surface area in folded protein | 25 | 23 | 90 | 97 | 63 | 31 | 50 | 24 | 19 | 50 | 71 | 44 | 49 | 47 | 23 | 32 | 43 | 60 | 18 | 18 |
Proportion of residues 95% buried | 0.38 | 0.45 | 0.01 | 0.03 | 0.12 | 0.40 | 0.15 | 0.50 | 0.45 | 0.18 | 0.07 | 0.22 | 0.18 | 0.23 | 0.36 | 0.27 | 0.17 | 0.15 | 0.60 | 0.54 |
Proportion of residues 100% buried | 0.20 | 0.16 | 0 | 0 | 0.03 | 0.11 | 0.04 | 0.14 | 0.22 | 0.04 | 0.01 | 0.08 | 0.03 | 0.08 | 0.18 | 0.04 | 0.02 | 0.03 | 0.19 | 0.18 |
Normalized frequency of beta-turn | 0.66 | 0.59 | 0.95 | 1.01 | 1.56 | 0.60 | 1.46 | 0.60 | 1.19 | 1.52 | 0.98 | 1.43 | 0.74 | 0.96 | 1.56 | 0.96 | 0.95 | 1.14 | 0.47 | 0.50 |
Normalized frequency of alpha-helix | 1.42 | 1.21 | 0.98 | 1.16 | 0.67 | 1.45 | 1.01 | 1.13 | 0.70 | 0.57 | 1.11 | 0.77 | 1.51 | 0.83 | 0.57 | 1.08 | 1 | 0.69 | 1.08 | 1.06 |
Normalized frequency of beta-sheet | 0.83 | 1.30 | 0.93 | 0.74 | 0.89 | 1.05 | 0.54 | 1.38 | 1.19 | 0.55 | 1.10 | 0.75 | 0.37 | 1.19 | 0.75 | 1.37 | 0.87 | 1.47 | 1.60 | 1.70 |
Normalized frequency of beta-turn | 0.74 | 0.50 | 1.01 | 1.19 | 1.46 | 0.60 | 1.52 | 0.66 | 0.96 | 1.56 | 0.96 | 1.43 | 0.95 | 0.98 | 1.56 | 0.60 | 0.95 | 1.14 | 0.47 | 0.59 |
Normalized frequency of N-terminal helix | 1.29 | 0.58 | 0.44 | 0.66 | 0.81 | 0.71 | 2.02 | 0.61 | 0.66 | 2.01 | 1.22 | 0.74 | 2.44 | 1.08 | 0.76 | 1.47 | 0.73 | 0.68 | 0.67 | 0.61 |
Normalized frequency of C-terminal helix | 1.20 | 1.13 | 1.25 | 1.83 | 0.59 | 1.57 | 0.61 | 1.10 | 1.11 | 0 | 1.22 | 0.96 | 1.24 | 0.75 | 0.42 | 0.40 | 1.77 | 0.73 | 0.98 | 1.25 |
Normalized frequency of N-terminal non helical region | 0.70 | 0.85 | 0.34 | 1.01 | 1.42 | 0.83 | 0.98 | 0.93 | 0.65 | 1.10 | 0.75 | 1.55 | 1.04 | 1.09 | 1.41 | 0.62 | 1.22 | 0.99 | 0.78 | 0.75 |
Normalized frequency of C-terminal non helical region | 0.52 | 0.84 | 1.24 | 1.49 | 1.64 | 0.52 | 1.06 | 1.04 | 0.94 | 1.58 | 0.70 | 0.93 | 0.59 | 0.86 | 1.64 | 0.16 | 1.86 | 0.96 | 0.87 | 0.32 |
Normalized frequency of N-terminal beta-sheet | 0.86 | 1.30 | 0.90 | 1 | 0.66 | 1.43 | 0.38 | 1.50 | 0.87 | 0.66 | 1.65 | 0.63 | 0.35 | 1.17 | 0.63 | 1.49 | 0.54 | 1.07 | 1.94 | 1.69 |
Normalized frequency of C-terminal beta-sheet | 0.75 | 1.27 | 0.90 | 0.74 | 1.21 | 0.95 | 0.85 | 1.50 | 1.11 | 0.40 | 0.65 | 0.79 | 0.55 | 0.75 | 0.74 | 1.19 | 0.90 | 1.96 | 1.35 | 1.79 |
Normalized frequency of N-terminal non beta region | 0.67 | 0.46 | 0.89 | 1.09 | 1.86 | 0.52 | 1.39 | 0.30 | 1.34 | 1.58 | 1.09 | 1.41 | 0.92 | 1.09 | 1.46 | 0.48 | 0.78 | 1.23 | 0.59 | 0.42 |
Normalized frequency of C-terminal non beta region | 0.74 | 0.59 | 1.05 | 0.82 | 1.13 | 0.85 | 1.32 | 0.44 | 0.53 | 1.69 | 0.77 | 1.49 | 0.85 | 1.16 | 1.68 | 1.59 | 0.96 | 1.01 | 0.53 | 0.59 |
Frequency of the 1st residue in turn | 0.060 | 0.061 | 0.070 | 0.055 | 0.161 | 0.068 | 0.147 | 0.059 | 0.149 | 0.102 | 0.074 | 0.120 | 0.056 | 0.086 | 0.102 | 0.077 | 0.140 | 0.082 | 0.043 | 0.062 |
Frequency of the 2nd residue in turn | 0.076 | 0.025 | 0.106 | 0.115 | 0.083 | 0.082 | 0.110 | 0.041 | 0.053 | 0.301 | 0.098 | 0.139 | 0.060 | 0.108 | 0.085 | 0.013 | 0.047 | 0.065 | 0.034 | 0.048 |
Frequency of the 3rd residue in turn | 0.035 | 0.036 | 0.099 | 0.072 | 0.191 | 0.014 | 0.179 | 0.065 | 0.117 | 0.034 | 0.037 | 0.125 | 0.077 | 0.065 | 0.190 | 0.064 | 0.093 | 0.114 | 0.013 | 0.028 |
Frequency of the 4th residue in turn | 0.058 | 0.070 | 0.085 | 0.095 | 0.091 | 0.055 | 0.081 | 0.065 | 0.128 | 0.068 | 0.098 | 0.106 | 0.064 | 0.079 | 0.152 | 0.167 | 0.054 | 0.125 | 0.056 | 0.053 |
Normalized frequency of the 2nd and 3rd residues in turn | 0.64 | 0.36 | 1.05 | 1.13 | 1.56 | 0.51 | 1.61 | 0.62 | 0.92 | 2.04 | 0.84 | 1.52 | 0.80 | 0.98 | 1.63 | 0.48 | 0.77 | 1.08 | 0.29 | 0.43 |
Normalized hydrophobicity scales for alpha-proteins | -0.45 | 1.29 | -0.24 | -0.36 | -0.20 | 1.37 | -1.52 | 1.48 | 0.79 | -0.12 | -0.99 | -0.98 | -0.80 | -0.70 | -1 | 1.38 | 1.07 | 1.49 | 0.76 | 1.26 |
Normalized hydrophobicity scales for beta-proteins | -0.08 | 1.24 | -0.09 | -0.09 | -0.70 | 1.27 | -0.71 | 1.53 | 0.76 | -0.01 | -0.40 | -0.93 | -1.31 | -0.59 | -0.84 | 2.25 | 0.43 | 1.53 | 1.39 | 1.09 |
Normalized hydrophobicity scales for alpha+beta-proteins | 0.36 | 1.18 | -0.52 | -0.56 | -0.90 | 1.21 | -1.09 | 1.01 | 0.70 | -0.06 | -1.05 | -0.60 | -0.83 | -1.20 | -0.82 | 1.31 | 0.16 | 1.05 | 2.17 | 1.21 |
Normalized hydrophobicity scales for alpha/beta-proteins | 0.17 | 0.96 | -0.70 | -0.62 | -0.90 | 0.60 | -1.05 | 1.29 | 1.24 | -0.21 | -1.20 | -0.83 | -1.19 | -0.62 | -0.57 | 1.51 | -0.25 | 0.66 | 2.06 | 1.21 |
Normalized average hydrophobicity scales | 0.02 | 1.14 | -0.42 | -0.41 | -0.77 | 1 | -1.04 | 1.35 | 0.77 | -0.09 | -1.10 | -0.97 | -1.14 | -0.77 | -0.80 | 1.71 | 0.26 | 1.11 | 1.81 | 1.13 |
Partial specific volume | 0.75 | 0.90 | 0.70 | 0.82 | 0.61 | 0.75 | 0.60 | 0.77 | 0.61 | 0.76 | 0.67 | 0.68 | 0.66 | 0.70 | 0.64 | 0.74 | 0.67 | 0.71 | 0.90 | 0.86 |
Normalized frequency of middle helix | 1.33 | 1.29 | 0.79 | 1.03 | 0.72 | 1.40 | 0.97 | 1.15 | 0.93 | 0.49 | 1.42 | 0.83 | 1.66 | 0.94 | 0.58 | 1.33 | 1.49 | 0.49 | 0.99 | 0.96 |
Normalized frequency of beta-sheet | 1 | 1.53 | 0.74 | 1.18 | 0.75 | 1.40 | 0.89 | 1.26 | 0.99 | 0.36 | 0.87 | 0.65 | 0.37 | 1.15 | 0.56 | 0.84 | 0.36 | 1.41 | 1.75 | 1.61 |
Normalized frequency of turn | 0.60 | 0.70 | 0.79 | 1.10 | 1.42 | 0.67 | 1.24 | 1.05 | 1.29 | 1.47 | 0.92 | 1.26 | 0.64 | 1.05 | 1.38 | 1.23 | 0.95 | 1.35 | 0.67 | 0.48 |
Size | 2.5 | 5.5 | 7.5 | 7.0 | 5.0 | 6.0 | 2.5 | 6.5 | 3.0 | 5.5 | 6.0 | 3.0 | 5.0 | 5.0 | 0.5 | 7.0 | 6.0 | 7.0 | 5.5 | 5.0 |
Amino acid composition | 8.6 | 7.4 | 4.9 | 6.6 | 4.3 | 1.7 | 5.5 | 3.6 | 2.9 | 5.2 | 3.9 | 7.0 | 6.0 | 6.1 | 8.4 | 1.3 | 2.0 | 3.4 | 4.5 | 6.6 |
Relative mutability | 100 | 40 | 65 | 56 | 134 | 94 | 106 | 41 | 20 | 56 | 93 | 120 | 102 | 97 | 49 | 18 | 66 | 41 | 96 | 74 |
Membrane preference for cytochrome b: MPH89 | 1.56 | 1.38 | 0.59 | 0.15 | 0.51 | 1.93 | 0.23 | 1.42 | 1.80 | 0.27 | 0.39 | 0.96 | 0.19 | 1.11 | 1.03 | 0.91 | 1 | 1.10 | 1.27 | 1.58 |
Average membrane preference: AMP07 | 1.26 | 1.36 | 0.38 | 0.33 | 0.59 | 1.52 | 0.27 | 1.46 | 1.60 | 0.54 | 0.39 | 0.98 | 0.23 | 1.01 | 1.08 | 1.06 | 1 | 0.89 | 1.44 | 1.33 |
Consensus normalized hydrophobicity scale | 0.25 | 0.53 | -1.76 | -1.10 | -0.64 | 0.26 | -0.72 | 0.61 | 0.04 | -0.07 | -0.69 | -0.26 | -0.62 | -0.18 | 0.16 | 0.37 | -0.40 | 0.02 | 0.73 | 0.54 |
Solvation free energy | 0.67 | 1.9 | -2.1 | -0.57 | -0.6 | 2.4 | -1.2 | 2.3 | 0.38 | 1.2 | -0.22 | 0.01 | -0.76 | 0.52 | 0 | 2.6 | 0.64 | 1.6 | 1.9 | 1.5 |
Atom-based hydrophobic moment | 0 | 1.0 | 10 | 5.7 | 1.3 | 1.9 | 1.9 | 1.1 | 0.17 | 0.18 | 1.9 | 0.73 | 3 | 1.5 | 0 | 1.6 | 0.99 | 1.8 | 1.2 | 0.48 |
Direction of hydrophobic moment | 0 | 0.89 | -0.96 | -0.99 | -0.86 | 0.94 | -0.98 | 0.92 | 0.76 | 0.22 | -1.0 | -0.67 | -0.89 | 0.09 | 0 | 0.67 | -0.75 | -0.93 | 0.99 | 0.84 |
Molecular weight | 89.09 | 131.17 | 174.20 | 146.19 | 132.12 | 149.21 | 133.10 | 165.19 | 121.15 | 115.13 | 146.15 | 105.09 | 147.13 | 119.12 | 75.07 | 204.24 | 155.16 | 181.19 | 131.17 | 117.15 |
Melting point | 297 | 337 | 238 | 224 | 236 | 283 | 270 | 284 | 178 | 222 | 185 | 228 | 249 | 253 | 290 | 282 | 277 | 344 | 284 | 293 |
Optical rotation | 1.80 | -11 | 12.50 | 14.60 | -5.60 | -10 | 5.05 | -34.50 | -16.50 | -86.20 | 6.30 | -7.50 | 12 | -28 | 0 | -33.70 | -38.50 | -10 | 12.40 | 5.63 |
pK-N | 9.69 | 9.60 | 8.99 | 9.18 | 8.80 | 9.21 | 9.60 | 9.18 | 8.35 | 10.64 | 9.13 | 9.21 | 9.67 | 9.10 | 9.78 | 9.44 | 9.17 | 9.11 | 9.68 | 9.62 |
pK-C | 2.34 | 2.36 | 1.82 | 2.16 | 2.02 | 2.28 | 1.88 | 2.16 | 1.92 | 1.95 | 2.17 | 2.19 | 2.10 | 2.09 | 2.35 | 2.43 | 1.82 | 2.20 | 2.36 | 2.32 |
Hydrophobic parameter pi | 0.31 | 1.70 | -1.01 | -0.99 | -0.60 | 1.23 | -0.77 | 1.79 | 1.54 | 0.72 | -0.22 | -0.04 | -0.64 | 0.26 | 0 | 2.25 | 0.13 | 0.96 | 1.80 | 1.22 |
Graph shape index | 1.28 | 2.59 | 2.34 | 1.89 | 1.60 | 2.35 | 1.60 | 2.94 | 1.77 | 2.67 | 1.56 | 1.31 | 1.56 | 3.03 | 0 | 3.21 | 2.99 | 2.94 | 4.19 | 3.67 |
Smoothed upsilon steric parameter | 0.53 | 0.92 | 0.69 | 0.78 | 0.58 | 0.77 | 0.59 | 0.71 | 0.66 | 0 | 0.71 | 0.55 | 0.72 | 0.63 | 0 | 0.84 | 0.64 | 0.71 | 0.96 | 0.89 |
Normalized van der Waals volume | 1 | 4 | 6.13 | 4.77 | 2.95 | 4.43 | 2.78 | 5.89 | 2.43 | 2.72 | 3.95 | 1.60 | 3.78 | 2.60 | 0 | 8.08 | 4.66 | 6.47 | 4 | 3 |
STERIMOL length of the side chain | 2.87 | 4.92 | 7.82 | 6.89 | 4.58 | 6.36 | 4.74 | 4.62 | 4.47 | 4.11 | 6.11 | 3.97 | 5.97 | 4.11 | 2.06 | 7.68 | 5.23 | 4.73 | 4.92 | 4.11 |
STERIMOL minimum width of the side chain | 1.52 | 1.52 | 1.52 | 1.52 | 1.52 | 1.52 | 1.52 | 1.52 | 1.52 | 1.52 | 1.52 | 1.52 | 1.52 | 1.73 | 1 | 1.52 | 1.52 | 1.52 | 1.90 | 1.90 |
STERIMOL maximum width of the side chain | 2.04 | 4.45 | 6.24 | 4.87 | 4.37 | 4.80 | 3.78 | 6.02 | 3.41 | 4.31 | 3.53 | 2.70 | 3.31 | 3.17 | 1 | 5.90 | 5.66 | 6.72 | 3.49 | 3.17 |
N.m.r. chemical shift of alpha-carbon | 7.3 | 10.1 | 11.1 | 10.9 | 8.0 | 10.4 | 9.2 | 13.9 | 14.4 | 17.8 | 10.6 | 13.1 | 11.4 | 16.7 | 0.0 | 13.2 | 10.2 | 13.9 | 16.1 | 17.2 |
Localized electrical effect | -0.01 | -0.01 | 0.04 | 0 | 0.06 | 0.04 | 0.15 | 0.03 | 0.12 | 0 | 0.05 | 0.11 | 0.07 | 0.04 | 0 | 0 | 0.08 | 0.03 | -0.01 | 0.01 |
Number of hydrogen bond donors | 0 | 0 | 4 | 2 | 2 | 0 | 1 | 0 | 0 | 0 | 2 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 0 |
Number of full nonbonding orbitals | 0 | 0 | 3 | 1 | 3 | 0 | 4 | 0 | 0 | 0 | 3 | 2 | 4 | 2 | 0 | 0 | 1 | 2 | 0 | 0 |
Positive charge | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
Negative charge | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
pK- | 4.76 | 4.79 | 4.30 | 4.27 | 3.64 | 4.25 | 5.69 | 4.31 | 3.67 | 0 | 4.54 | 3.83 | 5.48 | 3.87 | 3.77 | 4.75 | 2.84 | 4.30 | 4.81 | 4.86 |
Helix-coil equilibrium constant | 1.08 | 1.25 | 1.05 | 1.15 | 0.85 | 1.15 | 0.85 | 1.10 | 0.95 | 0.71 | 0.95 | 0.75 | 1.15 | 0.75 | 0.55 | 1.10 | 1 | 1.10 | 1.05 | 0.95 |
Helix initiation parameter at posision i-1 | 1 | 1 | 0.70 | 0.70 | 1.70 | 1 | 3.20 | 1 | 1 | 1 | 1 | 1.70 | 1.70 | 1.70 | 1 | 1 | 1 | 1 | 0.60 | 0.60 |
Helix initiation parameter at posision i, i+1, i+2 | 1 | 1 | 0.70 | 0.70 | 1 | 1 | 1.70 | 1 | 1 | 13 | 1 | 1 | 1.70 | 1 | 1.30 | 1 | 1 | 1 | 1 | 1 |
Helix termination parameter at posision j-2, j-1, j | 1.20 | 1 | 1.70 | 1.70 | 1.20 | 1 | 0.70 | 1 | 1 | 1 | 1 | 1.50 | 0.70 | 1 | 0.80 | 1 | 1.20 | 1 | 0.80 | 0.80 |
Helix termination parameter at posision j+1 | 1 | 1 | 1.70 | 1.70 | 1 | 1 | 0.70 | 1 | 1 | 0.10 | 1 | 1 | 0.70 | 1 | 1.50 | 1 | 1 | 1 | 1 | 1 |
Partition coefficient | 0.28 | 1 | 0.10 | 0.09 | 0.25 | 0.74 | 0.21 | 2.18 | 0.28 | 0.39 | 0.35 | 0.12 | 0.33 | 0.21 | 0.17 | 5.70 | 0.21 | 1.26 | 0.82 | 0.60 |
Alpha-helix indices | 1.29 | 1.31 | 1 | 1.33 | 0.81 | 1.54 | 1.10 | 1.13 | 0.79 | 0.63 | 1.07 | 0.78 | 1.49 | 0.77 | 0.63 | 1.18 | 1.33 | 0.71 | 1.05 | 0.81 |
Alpha-helix indices for alpha-proteins | 1.13 | 1.13 | 1.09 | 1.08 | 1.06 | 1.23 | 0.94 | 1.01 | 1.32 | 0.82 | 0.93 | 1.01 | 1.20 | 1.17 | 0.83 | 1.32 | 1.09 | 0.88 | 1.05 | 1.13 |
Alpha-helix indices for beta-proteins | 1.55 | 1.25 | 0.20 | 1.20 | 1.20 | 1.37 | 1.55 | 0.40 | 1.44 | 0.21 | 1.13 | 1.01 | 1.67 | 0.55 | 0.59 | 1.86 | 1.21 | 1.08 | 1.27 | 0.64 |
Alpha-helix indices for alpha/beta-proteins | 1.19 | 1.18 | 1 | 1.27 | 0.94 | 1.49 | 1.07 | 1.02 | 0.95 | 0.68 | 1.32 | 0.81 | 1.64 | 0.85 | 0.60 | 1.18 | 1.03 | 0.77 | 1.12 | 0.74 |
Beta-strand indices | 0.84 | 1.10 | 1.04 | 0.86 | 0.66 | 0.88 | 0.59 | 1.15 | 1.27 | 0.80 | 1.02 | 1.05 | 0.57 | 1.20 | 0.94 | 1.15 | 0.81 | 1.39 | 1.29 | 1.56 |
Beta-strand indices for beta-proteins | 0.86 | 1.28 | 1.15 | 1.01 | 0.60 | 1.15 | 0.66 | 1.34 | 0.91 | 0.61 | 1.11 | 0.91 | 0.37 | 1.14 | 0.86 | 1.13 | 1.07 | 1.37 | 1.17 | 1.31 |
Beta-strand indices for alpha/beta-proteins | 0.91 | 1.23 | 0.99 | 0.86 | 0.72 | 0.96 | 0.74 | 1.26 | 1.12 | 0.65 | 0.90 | 0.93 | 0.41 | 1.05 | 0.91 | 1.15 | 1.01 | 1.21 | 1.29 | 1.58 |
Aperiodic indices | 0.91 | 0.59 | 1 | 0.82 | 1.64 | 0.58 | 1.40 | 0.72 | 0.93 | 1.66 | 0.94 | 1.23 | 0.97 | 1.04 | 1.51 | 0.67 | 0.90 | 0.92 | 0.65 | 0.60 |
Aperiodic indices for alpha-proteins | 0.80 | 0.80 | 0.96 | 0.94 | 1.10 | 0.39 | 1.60 | 1.20 | 0 | 2.10 | 1.60 | 1.30 | 0.40 | 0.60 | 2 | 0 | 0.96 | 1.80 | 0.85 | 0.80 |
Aperiodic indices for beta-proteins | 1.10 | 0.52 | 0.93 | 0.94 | 1.57 | 0.69 | 1.41 | 0.60 | 1.05 | 1.77 | 0.81 | 1.13 | 1.40 | 0.88 | 1.30 | 0.62 | 0.85 | 0.41 | 0.67 | 0.58 |
Aperiodic indices for alpha/beta-proteins | 0.93 | 0.59 | 1.01 | 0.91 | 1.36 | 0.60 | 1.22 | 0.71 | 0.92 | 1.67 | 0.83 | 1.25 | 1.05 | 1.08 | 1.45 | 0.68 | 0.96 | 0.98 | 0.58 | 0.62 |
Hydrophobicity factor | 0.75 | 2.40 | 0.75 | 1.50 | 0.69 | 1.30 | 0 | 2.65 | 1 | 2.60 | 0.59 | 0 | 0 | 0.45 | 0 | 3 | 0 | 2.85 | 2.95 | 1.70 |
Residue volume | 88.3 | 168.5 | 181.2 | 175.6 | 125.1 | 162.2 | 110.8 | 189.0 | 112.4 | 122.2 | 148.7 | 88.7 | 140.5 | 118.2 | 60.0 | 227.0 | 152.6 | 193.0 | 168.5 | 141.4 |
Composition | 0 | 0 | 0.65 | 0.33 | 1.33 | 0 | 1.38 | 0 | 2.75 | 0.39 | 0.89 | 1.42 | 0.92 | 0.71 | 0.74 | 0.13 | 0.58 | 0.20 | 0 | 0 |
Polarity | 8.1 | 4.9 | 10.5 | 11.3 | 11.6 | 5.7 | 13.0 | 5.2 | 5.5 | 8.0 | 10.5 | 9.2 | 12.3 | 8.6 | 9.0 | 5.4 | 10.4 | 6.2 | 5.2 | 5.9 |
Volume | 31 | 111 | 124 | 119 | 56 | 105 | 54 | 132 | 55 | 32.5 | 85 | 32 | 83 | 61 | 3 | 170 | 96 | 136 | 111 | 84 |
Partition energy | 0.10 | -1.18 | 1.91 | 1.40 | 0.48 | -1.59 | 0.78 | -2.12 | -1.42 | 0.73 | 0.95 | 0.52 | 0.83 | 0.07 | 0.33 | -0.51 | -0.50 | -0.21 | -1.13 | -1.27 |
Hydration number | 1.0 | 0.8 | 2.3 | 5.3 | 2.2 | 0.7 | 6.5 | 1.4 | 0.1 | 0.9 | 2.1 | 1.7 | 6.2 | 1.5 | 1.1 | 1.9 | 2.8 | 2.1 | 0.8 | 0.9 |
Hydrophilicity value | -0.5 | -1.8 | 3.0 | 3.0 | 0.2 | -1.3 | 3.0 | -2.5 | -1.0 | 0.0 | 0.2 | 0.3 | 3.0 | -0.4 | 0.0 | -3.4 | -0.5 | -2.3 | -1.8 | -1.5 |
Heat capacity | 29.22 | 48.03 | 26.37 | 57.10 | 38.30 | 69.32 | 37.09 | 48.52 | 50.70 | 36.13 | 44.02 | 32.40 | 41.84 | 35.20 | 23.71 | 56.92 | 59.64 | 51.73 | 45 | 40.35 |
Absolute entropy | 30.88 | 50.62 | 68.43 | 63.21 | 41.70 | 55.32 | 40.66 | 51.06 | 53.83 | 39.21 | 46.62 | 35.65 | 44.98 | 36.50 | 24.74 | 60 | 65.99 | 51.15 | 49.71 | 42.75 |
Entropy of formation | 154.33 | 232.30 | 341.01 | 300.46 | 207.90 | 202.65 | 194.91 | 204.74 | 219.79 | 179.93 | 235.51 | 174.06 | 223.16 | 205.80 | 127.90 | 237.01 | 242.54 | 229.15 | 233.21 | 207.60 |
Normalized relative frequency of alpha-helix | 1.53 | 1.32 | 1.17 | 1.26 | 0.60 | 1.66 | 1 | 1.22 | 0.89 | 0.25 | 1.27 | 0.65 | 1.63 | 0.86 | 0.44 | 1.05 | 1.03 | 0.70 | 1.07 | 0.93 |
Normalized relative frequency of extended structure | 0.86 | 1.01 | 0.98 | 0.77 | 0.74 | 1.06 | 0.69 | 1.16 | 1.39 | 1.16 | 0.89 | 1.09 | 0.66 | 1.24 | 0.70 | 1.17 | 1.06 | 1.28 | 1.31 | 1.40 |
Normalized relative frequency of bend | 0.78 | 0.57 | 1.06 | 1.01 | 1.56 | 0.30 | 1.50 | 0.67 | 0.60 | 1.55 | 0.78 | 1.19 | 0.97 | 1.09 | 1.73 | 0.74 | 0.83 | 1.14 | 0.40 | 0.44 |
Normalized relative frequency of bend R | 1.09 | 0.44 | 0.97 | 1.25 | 1.14 | 0.45 | 0.77 | 0.50 | 0.50 | 2.96 | 0.83 | 1.21 | 0.92 | 1.33 | 1.25 | 0.62 | 0.67 | 0.94 | 0.66 | 0.56 |
Normalized relative frequency of bend S | 0.35 | 0.58 | 0.75 | 0.83 | 2.12 | 0.22 | 2.16 | 0.89 | 0.50 | 0.43 | 0.73 | 1.24 | 0.65 | 0.85 | 2.40 | 0.62 | 1.19 | 1.44 | 0.12 | 0.43 |
Normalized relative frequency of helix end | 1.09 | 1.30 | 1.07 | 1.20 | 0.88 | 0.55 | 1.24 | 0.80 | 1.04 | 1.78 | 1.09 | 1.20 | 1.14 | 0.99 | 0.27 | 1.03 | 1.07 | 0.69 | 0.97 | 0.77 |
Normalized relative frequency of double bend | 1.34 | 1.05 | 2.78 | 0.79 | 0.92 | 0 | 1.77 | 0.43 | 1.44 | 0.37 | 0.79 | 0.87 | 2.54 | 1.14 | 0.95 | 1.79 | 0 | 0.73 | 0.52 | 0 |
Normalized relative frequency of coil | 0.47 | 0.53 | 0.52 | 0.98 | 2.16 | 0.68 | 1.15 | 0.61 | 0.41 | 0.63 | 0.95 | 1.03 | 0.64 | 0.39 | 3.03 | 0.63 | 0.89 | 0.83 | 0.62 | 0.76 |
Average accessible surface area | 27.8 | 27.6 | 94.7 | 103.0 | 60.1 | 33.5 | 60.6 | 25.5 | 15.5 | 51.5 | 68.7 | 42.0 | 68.2 | 45.0 | 24.5 | 34.7 | 50.7 | 55.2 | 22.8 | 23.7 |
Percentage of buried residues | 51 | 60 | 5 | 3 | 22 | 52 | 19 | 58 | 74 | 25 | 16 | 35 | 16 | 30 | 52 | 49 | 34 | 24 | 66 | 64 |
Percentage of exposed residues | 15 | 16 | 67 | 85 | 49 | 20 | 50 | 10 | 5 | 45 | 56 | 32 | 55 | 32 | 10 | 17 | 34 | 41 | 13 | 14 |
Ratio of buried and accessible molar fractions | 1.7 | 2.4 | 0.1 | 0.05 | 0.4 | 1.9 | 0.4 | 2.2 | 4.6 | 0.6 | 0.3 | 0.8 | 0.3 | 0.7 | 1.8 | 1.6 | 0.8 | 0.5 | 3.1 | 2.9 |
Transfer free energy | 0.3 | 0.5 | -1.4 | -1.8 | -0.5 | 0.4 | -0.6 | 0.5 | 0.9 | -0.3 | -0.7 | -0.1 | -0.7 | -0.2 | 0.3 | 0.3 | -0.1 | -0.4 | 0.7 | 0.6 |
Hydrophobicity | 0.87 | 2.17 | 0.85 | 1.64 | 0.09 | 1.67 | 0.66 | 2.87 | 1.52 | 2.77 | 0 | 0.07 | 0.67 | 0.07 | 0.10 | 3.77 | 0.87 | 2.67 | 3.15 | 1.87 |
pK | 2.34 | 2.36 | 1.18 | 2.18 | 2.02 | 2.28 | 2.01 | 1.83 | 1.65 | 1.99 | 2.17 | 2.21 | 2.19 | 2.10 | 2.34 | 2.38 | 1.82 | 2.20 | 2.36 | 2.32 |
Relative frequency of occurrence | 0.077 | 0.091 | 0.051 | 0.059 | 0.043 | 0.024 | 0.052 | 0.040 | 0.020 | 0.051 | 0.041 | 0.069 | 0.062 | 0.059 | 0.074 | 0.014 | 0.023 | 0.032 | 0.053 | 0.066 |
Relative mutability | 100 | 54 | 83 | 72 | 104 | 93 | 86 | 51 | 44 | 58 | 84 | 117 | 77 | 107 | 50 | 25 | 91 | 50 | 103 | 98 |
Amino acid distribution | 5.3 | 4.7 | 2.6 | 4.1 | 3.0 | 1.1 | 3.6 | 2.3 | 1.3 | 2.5 | 2.4 | 4.5 | 3.3 | 3.7 | 4.8 | 0.8 | 1.4 | 2.3 | 3.1 | 4.2 |
Sequence frequency | 685 | 581 | 382 | 575 | 397 | 132 | 400 | 303 | 241 | 366 | 313 | 593 | 427 | 490 | 707 | 99 | 155 | 292 | 394 | 553 |
Average relative probability of helix | 1.36 | 1.21 | 1 | 1.22 | 0.89 | 1.45 | 1.04 | 1.05 | 0.82 | 0.52 | 1.14 | 0.74 | 1.48 | 0.81 | 0.63 | 0.97 | 1.11 | 0.79 | 1.08 | 0.94 |
Average relative probability of beta-sheet | 0.81 | 1.24 | 0.85 | 0.77 | 0.62 | 1.05 | 0.71 | 1.20 | 1.17 | 0.61 | 0.98 | 0.92 | 0.53 | 1.18 | 0.88 | 1.18 | 0.92 | 1.23 | 1.48 | 1.66 |
Average relative probability of inner helix | 1.45 | 1.56 | 1.15 | 1.27 | 0.64 | 1.83 | 0.91 | 1.20 | 0.70 | 0.21 | 1.14 | 0.48 | 1.29 | 0.77 | 0.53 | 1.17 | 1.13 | 0.74 | 1.23 | 1.10 |
Average relative probability of inner beta-sheet | 0.75 | 1.56 | 0.79 | 0.66 | 0.33 | 0.86 | 0.31 | 1.37 | 1.46 | 0.52 | 0.75 | 0.82 | 0.46 | 1.36 | 0.83 | 0.79 | 0.83 | 1.08 | 1.87 | 2 |
Flexibility parameter for no rigid neighbors | 1.041 | 0.967 | 1.038 | 1.093 | 1.117 | 0.947 | 1.033 | 0.930 | 0.960 | 1.055 | 1.165 | 1.169 | 1.094 | 1.073 | 1.142 | 0.925 | 0.982 | 0.961 | 1.002 | 0.982 |
Flexibility parameter for one rigid neighbor | 0.946 | 0.961 | 1.028 | 1.082 | 1.006 | 0.862 | 1.089 | 0.912 | 0.878 | 1.085 | 1.025 | 1.048 | 1.036 | 1.051 | 1.042 | 0.917 | 0.952 | 0.930 | 0.892 | 0.927 |
Flexibility parameter for two rigid neighbors | 0.892 | 0.921 | 0.901 | 1.057 | 0.930 | 0.804 | 0.932 | 0.914 | 0.925 | 0.932 | 0.885 | 0.923 | 0.933 | 0.934 | 0.923 | 0.803 | 0.894 | 0.837 | 0.872 | 0.913 |
The Kerr-constant increments | 49.1 | 15.6 | 133 | 0 | -3.6 | 6.8 | 0 | 54.7 | 0 | 43.8 | 20 | 44.4 | 0 | 31.0 | 64.6 | 70.5 | 75.7 | 0 | 18.9 | 29.5 |
Net charge | 0 | 0 | 1 | 1 | 0 | 0 | -1 | 0 | 0 | 0 | 0 | 0 | -1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Side chain interaction parameter | 4.60 | 3.25 | 6.50 | 7.90 | 5.90 | 1.40 | 5.70 | 3.20 | -1 | 7 | 6.10 | 5.25 | 5.60 | 4.80 | 7.60 | 4 | 4.50 | 4.35 | 2.60 | 3.40 |
Side chain interaction parameter | 4.32 | 3.93 | 6.55 | 7.92 | 6.24 | 2.44 | 6.04 | 2.59 | 1.73 | 7.19 | 6.13 | 5.37 | 6.17 | 5.16 | 6.09 | 2.78 | 5.66 | 3.58 | 2.31 | 3.31 |
Fraction of site occupied by water | 0.28 | 0.16 | 0.34 | 0.59 | 0.31 | 0.08 | 0.33 | 0.10 | 0.11 | 0.46 | 0.39 | 0.27 | 0.37 | 0.26 | 0.28 | 0.15 | 0.23 | 0.25 | 0.12 | 0.22 |
Side chain volume | 27.5 | 93.5 | 105.0 | 100.0 | 58.7 | 94.1 | 40.0 | 115.5 | 44.6 | 41.9 | 80.7 | 29.3 | 62.0 | 51.3 | 0.0 | 145.5 | 79.0 | 117.3 | 93.5 | 71.5 |
Hydropathy index | 1.8 | 3.8 | -4.5 | -3.9 | -3.5 | 1.9 | -3.5 | 2.8 | 2.5 | -1.6 | -3.5 | -0.8 | -3.5 | -0.7 | -0.4 | -0.9 | -3.2 | -1.3 | 4.5 | 4.2 |
Transfer free energy, CHP/water | -0.48 | 1.02 | -0.06 | -0.09 | -0.87 | 0.81 | -0.75 | 1.03 | -0.32 | 2.03 | -0.32 | 0.05 | -0.71 | -0.35 | 0 | 0.66 | -0.51 | 1.24 | 0.81 | 0.56 |
Hydrophobic parameter | -0.5 | -1.8 | 3.0 | 3.0 | 0.2 | -1.3 | 2.5 | -2.5 | -1.0 | -1.4 | 0.2 | 0.3 | 2.5 | -0.4 | 0.0 | -3.4 | -0.5 | -2.3 | -1.8 | -1.5 |
Distance between C-alpha and centroid of side chain | 0.77 | 2.08 | 3.72 | 2.94 | 1.98 | 2.34 | 1.99 | 2.97 | 1.38 | 1.42 | 2.58 | 1.28 | 2.63 | 1.43 | 0 | 3.58 | 2.76 | 3.36 | 1.83 | 1.49 |
Side chain angle thet | 121.9 | 118.1 | 121.4 | 122.0 | 117.5 | 113.1 | 121.2 | 118.2 | 113.7 | 81.9 | 118.0 | 117.9 | 118.2 | 117.1 | 0 | 118.4 | 118.2 | 110.0 | 118.9 | 121.7 |
Side chain torsion angle ph | 243.2 | 205.6 | 206.6 | 210.9 | 207.1 | 204.0 | 215.0 | 203.7 | 209.4 | 237.4 | 205.4 | 232.0 | 213.6 | 226.7 | 300.0 | 203.7 | 219.9 | 195.6 | 217.9 | 220.3 |
Radius of gyration of side chain | 0.77 | 1.54 | 2.38 | 2.08 | 1.45 | 1.80 | 1.43 | 1.90 | 1.22 | 1.25 | 1.75 | 1.08 | 1.77 | 1.24 | 0.58 | 2.21 | 1.78 | 2.13 | 1.56 | 1.29 |
Van der waals parameter r0 | 5.2 | 7.0 | 6.0 | 6.0 | 5.0 | 6.8 | 5.0 | 7.1 | 6.1 | 6.2 | 6.0 | 4.9 | 6.0 | 5.0 | 4.2 | 7.6 | 6.0 | 7.1 | 7.0 | 6.4 |
Van der waals parameter epsilon | 0.025 | 0.19 | 0.20 | 0.20 | 0.10 | 0.19 | 0.10 | 0.39 | 0.10 | 0.17 | 0.10 | 0.025 | 0.10 | 0.10 | 0.025 | 0.56 | 0.10 | 0.39 | 0.19 | 0.15 |
Normalized frequency of alpha-helix, with weights | 1.29 | 1.30 | 0.96 | 1.23 | 0.90 | 1.47 | 1.04 | 1.07 | 1.11 | 0.52 | 1.27 | 0.82 | 1.44 | 0.82 | 0.56 | 0.99 | 1.22 | 0.72 | 0.97 | 0.91 |
Normalized frequency of beta-sheet, with weights | 0.90 | 1.02 | 0.99 | 0.77 | 0.76 | 0.97 | 0.72 | 1.32 | 0.74 | 0.64 | 0.80 | 0.95 | 0.75 | 1.21 | 0.92 | 1.14 | 1.08 | 1.25 | 1.45 | 1.49 |
Normalized frequency of reverse turn, with weights | 0.77 | 0.58 | 0.88 | 0.96 | 1.28 | 0.41 | 1.41 | 0.59 | 0.81 | 1.91 | 0.98 | 1.32 | 0.99 | 1.04 | 1.64 | 0.76 | 0.68 | 1.05 | 0.51 | 0.47 |
Normalized frequency of alpha-helix, unweighted | 1.32 | 1.31 | 0.98 | 1.25 | 0.95 | 1.39 | 1.03 | 1.02 | 0.92 | 0.58 | 1.10 | 0.76 | 1.44 | 0.79 | 0.61 | 0.97 | 1.31 | 0.73 | 0.93 | 0.93 |
Normalized frequency of beta-sheet, unweighted | 0.86 | 1.04 | 0.97 | 0.77 | 0.73 | 0.93 | 0.69 | 1.21 | 1.04 | 0.68 | 1 | 1.02 | 0.66 | 1.27 | 0.89 | 1.26 | 0.85 | 1.31 | 1.47 | 1.43 |
Normalized frequency of reverse turn, unweighted | 0.79 | 0.57 | 0.90 | 0.99 | 1.25 | 0.51 | 1.47 | 0.77 | 0.79 | 1.78 | 0.92 | 1.30 | 1.02 | 0.97 | 1.67 | 0.79 | 0.81 | 0.93 | 0.50 | 0.46 |
Frequency of occurrence in beta-bends | 0.22 | 0.19 | 0.28 | 0.27 | 0.42 | 0.38 | 0.73 | 0.08 | 0.20 | 0.46 | 0.26 | 0.55 | 0.08 | 0.49 | 0.58 | 0.43 | 0.14 | 0.46 | 0.22 | 0.08 |
Conformational preference for all beta-strands | 0.92 | 1.30 | 0.93 | 0.70 | 0.60 | 1.19 | 0.48 | 1.25 | 1.16 | 0.40 | 0.95 | 0.82 | 0.61 | 1.12 | 0.61 | 1.54 | 0.93 | 1.53 | 1.81 | 1.81 |
Conformational preference for parallel beta-strands | 1 | 1.42 | 0.68 | 0.59 | 0.54 | 1.49 | 0.50 | 1.30 | 0.91 | 0.35 | 0.28 | 0.70 | 0.59 | 0.59 | 0.79 | 0.89 | 0.38 | 1.08 | 2.60 | 2.63 |
Conformational preference for antiparallel beta-strands | 0.90 | 1.26 | 1.02 | 0.74 | 0.62 | 1.09 | 0.47 | 1.23 | 1.24 | 0.42 | 1.18 | 0.87 | 0.62 | 1.30 | 0.56 | 1.75 | 1.12 | 1.68 | 1.54 | 1.53 |
Average surrounding hydrophobicity | 12.97 | 14.90 | 11.72 | 11.36 | 11.42 | 14.39 | 10.85 | 14 | 14.63 | 11.37 | 11.76 | 11.23 | 11.89 | 11.69 | 12.43 | 13.93 | 12.16 | 13.42 | 15.67 | 15.71 |
Normalized frequency of alpha-helix | 1.43 | 1.36 | 1.18 | 1.27 | 0.64 | 1.53 | 0.92 | 1.19 | 0.94 | 0.49 | 1.22 | 0.70 | 1.67 | 0.78 | 0.46 | 1.01 | 0.98 | 0.69 | 1.04 | 0.98 |
Normalized frequency of extended structure | 0.86 | 0.98 | 0.94 | 0.79 | 0.74 | 1.08 | 0.72 | 1.16 | 1.17 | 1.22 | 0.89 | 1.04 | 0.62 | 1.18 | 0.97 | 1.07 | 1.06 | 1.25 | 1.24 | 1.33 |
Normalized frequency of zeta R | 0.64 | 0.37 | 0.62 | 0.89 | 3.14 | 1.07 | 1.92 | 0.86 | 0.32 | 0.50 | 0.80 | 1.01 | 1.01 | 0.92 | 0.63 | 1 | 2.05 | 1.31 | 0.92 | 0.87 |
Normalized frequency of left-handed alpha-helix | 0.17 | 0.21 | 0.76 | 1.17 | 2.62 | 0 | 1.08 | 0.28 | 0.95 | 0.12 | 0.91 | 0.57 | 0.28 | 0.23 | 5.02 | 0 | 0.57 | 0.97 | 0.26 | 0.24 |
Normalized frequency of zeta L | 1.13 | 0.65 | 0.48 | 1.13 | 1.11 | 0 | 1.18 | 0.45 | 0.38 | 0 | 0.41 | 0.81 | 1.02 | 0.71 | 3.84 | 0.93 | 0.30 | 0.38 | 0.40 | 0.48 |
Normalized frequency of alpha region | 1 | 1.01 | 1.18 | 1.05 | 0.87 | 0.36 | 1.39 | 0.65 | 1.09 | 1.95 | 1.13 | 1.56 | 1.04 | 1.23 | 0.46 | 1.10 | 0.71 | 0.87 | 0.68 | 0.58 |
Refractivity | 4.34 | 18.78 | 26.66 | 21.29 | 13.28 | 21.64 | 12 | 29.40 | 35.77 | 10.93 | 17.56 | 6.35 | 17.26 | 11.01 | 0 | 42.53 | 21.81 | 31.53 | 19.06 | 13.92 |
Retention coefficient in HPLC, pH7.4 | 0.5 | 8.8 | 0.8 | 0.1 | 0.8 | 4.8 | -8.2 | 13.2 | -6.8 | 6.1 | -4.8 | 1.2 | -16.9 | 2.7 | 0.0 | 14.9 | -3.5 | 6.1 | 13.9 | 2.7 |
Retention coefficient in HPLC, pH2.1 | -0.1 | 10.0 | -4.5 | -3.2 | -1.6 | 7.1 | -2.8 | 13.9 | -2.2 | 8.0 | -2.5 | -3.7 | -7.5 | 1.5 | -0.5 | 18.1 | 0.8 | 8.2 | 11.8 | 3.3 |
Retention coefficient in NaClO4 | 1.1 | 11.0 | -0.4 | -1.9 | -4.2 | 5.4 | -1.6 | 13.4 | 7.1 | 4.4 | -2.9 | -3.2 | 0.7 | -1.7 | -0.2 | 17.1 | -0.7 | 7.4 | 8.5 | 5.9 |
Retention coefficient in NaH2PO4 | 1.0 | 9.6 | -2.0 | -3.0 | -3.0 | 4.0 | -0.5 | 12.6 | 4.6 | 3.1 | -2.0 | -2.9 | 1.1 | -0.6 | 0.2 | 15.1 | -2.2 | 6.7 | 7.0 | 4.6 |
Average reduced distance for C-alpha | 0.93 | 0.85 | 0.98 | 1.05 | 0.98 | 0.84 | 1.01 | 0.78 | 0.88 | 1 | 1.02 | 1.02 | 1.02 | 0.99 | 1.01 | 0.83 | 0.89 | 0.93 | 0.79 | 0.81 |
Average reduced distance for side chain | 0.94 | 0.82 | 1.09 | 1.23 | 1.04 | 0.83 | 1.08 | 0.73 | 0.84 | 1.04 | 1.11 | 1.04 | 1.12 | 1.02 | 1.01 | 0.87 | 0.92 | 1.03 | 0.76 | 0.81 |
Average side chain orientation angle | 87 | 104 | 81 | 65 | 70 | 100 | 71 | 108 | 104 | 78 | 66 | 83 | 72 | 83 | 90 | 94 | 90 | 83 | 105 | 94 |
Effective partition energy | 2.36 | 3.93 | 1.92 | 1.23 | 1.70 | 4.22 | 1.67 | 4.37 | 3.36 | 1.89 | 1.75 | 1.81 | 1.74 | 2.04 | 2.06 | 3.82 | 2.41 | 2.91 | 4.17 | 3.49 |
Normalized frequency of alpha-helix | 1.29 | 1.23 | 0.83 | 1.23 | 0.77 | 1.23 | 1 | 1.23 | 0.94 | 0.70 | 1.10 | 0.78 | 1.54 | 0.87 | 0.72 | 1.06 | 1.29 | 0.63 | 0.94 | 0.97 |
Normalized frequency of bata-structure | 0.96 | 1.26 | 0.67 | 0.81 | 0.72 | 1.29 | 0.90 | 1.37 | 1.13 | 0.75 | 1.18 | 0.77 | 0.33 | 1.23 | 0.90 | 1.13 | 0.87 | 1.07 | 1.54 | 1.41 |
Normalized frequency of coil | 0.72 | 0.63 | 1.33 | 0.84 | 1.38 | 0.62 | 1.04 | 0.58 | 1.01 | 1.43 | 0.81 | 1.34 | 0.75 | 1.03 | 1.35 | 0.87 | 0.76 | 1.35 | 0.80 | 0.83 |
AA composition of total proteins | 7.99 | 9.16 | 5.86 | 6.01 | 4.33 | 2.50 | 5.14 | 3.83 | 1.81 | 4.95 | 3.98 | 6.84 | 6.10 | 5.77 | 6.91 | 1.34 | 2.17 | 3.15 | 5.48 | 6.65 |
SD of AA composition of total proteins | 3.73 | 3.40 | 3.34 | 3.36 | 2.33 | 1.37 | 2.23 | 1.94 | 2.30 | 3.18 | 2.36 | 2.83 | 3 | 2.63 | 3.36 | 1.15 | 1.55 | 1.76 | 2.52 | 2.53 |
AA composition of mt-proteins | 5.74 | 15.36 | 1.92 | 3.20 | 5.25 | 5.30 | 2.11 | 6.51 | 1.03 | 4.79 | 2.30 | 7.55 | 2.63 | 7.51 | 5.66 | 2.51 | 2.30 | 4.08 | 9.12 | 5.12 |
Normalized composition of mt-proteins | -0.60 | 1.82 | -1.18 | -0.84 | 0.39 | 2.04 | -1.36 | 1.38 | -0.34 | -0.05 | -0.71 | 0.25 | -1.16 | 0.66 | -0.37 | 1.02 | 0.08 | 0.53 | 1.44 | -0.60 |
AA composition of mt-proteins from animal | 5.88 | 16.52 | 1.54 | 2.58 | 4.38 | 6 | 1.70 | 6.58 | 1.11 | 5.29 | 2.30 | 7.68 | 2.60 | 8.38 | 5.29 | 2.89 | 2.33 | 3.51 | 8.78 | 4.66 |
Normalized composition from animal | -0.57 | 2.16 | -1.29 | -1.02 | 0.02 | 2.55 | -1.54 | 1.42 | -0.30 | 0.11 | -0.71 | 0.30 | -1.17 | 0.99 | -0.48 | 1.35 | 0.10 | 0.20 | 1.31 | -0.79 |
AA composition of mt-proteins from fungi and plant | 5.39 | 12.64 | 2.81 | 4.67 | 7.31 | 3.68 | 3.07 | 6.34 | 0.86 | 3.62 | 2.31 | 7.24 | 2.70 | 5.44 | 6.52 | 1.64 | 2.23 | 5.42 | 9.94 | 6.18 |
Normalized composition from fungi and plant | -0.70 | 1.02 | -0.91 | -0.40 | 1.28 | 0.86 | -0.93 | 1.29 | -0.41 | -0.42 | -0.71 | 0.14 | -1.13 | -0.13 | -0.12 | 0.26 | 0.04 | 1.29 | 1.77 | -0.19 |
AA composition of membrane proteins | 9.25 | 10.94 | 3.96 | 3.50 | 3.71 | 3.14 | 3.89 | 6.36 | 1.07 | 4.36 | 3.17 | 6.26 | 4.80 | 5.66 | 8.51 | 2.22 | 1.88 | 3.28 | 6.47 | 7.55 |
Normalized composition of membrane proteins | 0.34 | 0.52 | -0.57 | -0.75 | -0.27 | 0.47 | -0.56 | 1.30 | -0.32 | -0.19 | -0.34 | -0.20 | -0.43 | -0.04 | 0.48 | 0.77 | -0.19 | 0.07 | 0.39 | 0.36 |
Transmembrane regions of non-mt-proteins | 10.17 | 16.22 | 1.21 | 1.04 | 1.36 | 4.12 | 1.18 | 9.60 | 1.48 | 2.24 | 1.57 | 5.38 | 1.15 | 5.61 | 8.87 | 2.67 | 1.07 | 2.68 | 10.91 | 11.44 |
Transmembrane regions of mt-proteins | 6.61 | 21.66 | 0.41 | 1.15 | 1.84 | 7.17 | 0.59 | 7.76 | 0.83 | 3.51 | 1.20 | 6.84 | 1.63 | 8.89 | 4.88 | 2.11 | 1.14 | 2.57 | 12.91 | 6.30 |
Ratio of average and computed composition | 1.61 | 1.37 | 0.40 | 0.62 | 0.73 | 1.59 | 0.75 | 1.24 | 0.37 | 0.67 | 0.61 | 0.68 | 1.50 | 0.92 | 3.12 | 1.63 | 0.46 | 0.67 | 1.61 | 1.30 |
AA composition of CYT of single-spanning proteins | 8.63 | 8.44 | 6.75 | 6.25 | 4.18 | 2.14 | 6.24 | 2.73 | 1.03 | 6.28 | 4.76 | 8.53 | 7.82 | 4.43 | 6.80 | 0.80 | 2.70 | 2.54 | 3.48 | 5.44 |
AA composition of CYT2 of single-spanning proteins | 10.88 | 8.03 | 6.01 | 6.11 | 5.75 | 3.79 | 6.13 | 2.93 | 0.69 | 7.21 | 4.68 | 7.25 | 9.34 | 3.51 | 7.72 | 0.47 | 2.15 | 1.01 | 1.80 | 4.57 |
AA composition of EXT of single-spanning proteins | 5.15 | 8.11 | 4.38 | 5.25 | 4.81 | 1.60 | 5.75 | 3.52 | 3.24 | 5.65 | 4.45 | 8.04 | 7.05 | 7.41 | 6.38 | 1.68 | 2.69 | 3.42 | 4.40 | 7 |
AA composition of EXT2 of single-spanning proteins | 5.04 | 9.88 | 3.73 | 6.31 | 5.94 | 1.85 | 5.26 | 3.72 | 2.20 | 6.22 | 4.50 | 8.05 | 6.07 | 5.20 | 7.09 | 2.10 | 2.99 | 3.32 | 4.32 | 6.19 |
AA composition of MEM of single-spanning proteins | 9.90 | 22.28 | 0.09 | 0.16 | 0.94 | 1.85 | 0.35 | 6.47 | 2.55 | 2.38 | 0.87 | 4.17 | 0.08 | 4.33 | 8.14 | 2.21 | 0.20 | 3.42 | 15.25 | 14.34 |
AA composition of CYT of multi-spanning proteins | 6.69 | 8.23 | 6.65 | 8.36 | 4.49 | 2.46 | 4.97 | 3.59 | 1.70 | 5.20 | 5.39 | 7.40 | 7.76 | 5.18 | 6.32 | 1.06 | 2.11 | 2.75 | 4.51 | 5.27 |
AA composition of EXT of multi-spanning proteins | 5.08 | 8.03 | 4.75 | 4.93 | 5.75 | 2.61 | 5.96 | 4.36 | 2.95 | 4.84 | 4.24 | 6.41 | 6.04 | 5.87 | 8.20 | 2.31 | 2.10 | 4.55 | 4.95 | 6.07 |
AA composition of MEM of multi-spanning proteins | 9.36 | 16.64 | 0.27 | 0.58 | 2.31 | 3.93 | 0.94 | 10.99 | 2.56 | 1.96 | 1.14 | 5.58 | 0.94 | 4.68 | 6.17 | 2.20 | 0.47 | 3.13 | 13.73 | 12.43 |
8 A contact number | 0.23 | 1.03 | -0.26 | -1.05 | -0.94 | 0.66 | -1.13 | 0.48 | 1.78 | -0.76 | -0.57 | -0.67 | -0.75 | -0.36 | -0.07 | 0.90 | 0.11 | 0.59 | 1.19 | 1.24 |
14 A contact number | -0.22 | 5.01 | -0.93 | -4.18 | -2.65 | 3.51 | -4.12 | 5.27 | 4.66 | -3.03 | -2.76 | -2.84 | -3.64 | -1.20 | -1.62 | 5.20 | 1.28 | 2.15 | 5.58 | 4.45 |
Transfer energy, organic solvent/water | 0.5 | 1.8 | 0.0 | 0.0 | 0.0 | 1.3 | 0.0 | 2.5 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.4 | 0.0 | 3.4 | 0.5 | 2.3 | 1.8 | 1.5 |
Average non-bonded energy per atom | -1.895 | -1.966 | -1.475 | -1.374 | -1.560 | -1.963 | -1.518 | -1.864 | -2.035 | -1.699 | -1.521 | -1.753 | -1.535 | -1.767 | -1.898 | -1.869 | -1.755 | -1.686 | -1.951 | -1.981 |
Short and medium range non-bonded energy per atom | -1.404 | -1.315 | -0.921 | -1.074 | -1.178 | -1.303 | -1.162 | -1.135 | -1.365 | -1.236 | -1.116 | -1.297 | -1.163 | -1.252 | -1.364 | -1.030 | -1.215 | -1.030 | -1.189 | -1.254 |
Long range non-bonded energy per atom | -0.491 | -0.650 | -0.554 | -0.300 | -0.382 | -0.659 | -0.356 | -0.729 | -0.670 | -0.463 | -0.405 | -0.455 | -0.371 | -0.515 | -0.534 | -0.839 | -0.540 | -0.656 | -0.762 | -0.728 |
Average non-bonded energy per residue | -9.475 | -15.728 | -16.225 | -12.366 | -12.480 | -15.704 | -12.144 | -20.504 | -12.210 | -11.893 | -13.689 | -10.518 | -13.815 | -12.369 | -7.592 | -26.166 | -17.550 | -20.232 | -15.608 | -13.867 |
Short and medium range non-bonded energy per residue | -7.020 | -10.520 | -10.131 | -9.666 | -9.424 | -10.424 | -9.296 | -12.485 | -8.190 | -8.652 | -10.044 | -7.782 | -10.467 | -8.764 | -5.456 | -14.420 | -12.150 | -12.360 | -9.512 | -8.778 |
Optimized beta-structure-coil equilibrium constant | 2.01 | 2.73 | 0.84 | 2.55 | 0.03 | 1.75 | -2.05 | 2.68 | 1.98 | 0.41 | 1.02 | 1.47 | 0.93 | 2.39 | 0.12 | 2.49 | -0.14 | 2.23 | 3.70 | 3.50 |
Optimized propensity to form reverse turn | 1.34 | 0.54 | 0.95 | 0.61 | 2.49 | 0.70 | 3.32 | 0.80 | 1.07 | 2.12 | 1.49 | 0.94 | 2.20 | 1.09 | 2.07 | -4.65 | 1.27 | -0.17 | 0.66 | 1.32 |
Optimized transfer energy parameter | 0.46 | 0.43 | -1.54 | -1.71 | 1.31 | 0.15 | -0.33 | 0.52 | 0.20 | -0.58 | -1.12 | -0.83 | 0.48 | -1.52 | 0.64 | 1.25 | -1.31 | -2.21 | 3.28 | 0.54 |
Optimized average non-bonded energy per atom | -2.49 | -7.16 | 2.55 | -9.97 | 2.27 | -4.96 | 8.86 | -6.64 | -3.13 | 5.19 | 1.79 | -1.60 | 4.04 | -4.75 | -0.56 | -17.84 | 4.22 | 9.25 | -10.87 | -3.97 |
Optimized side chain interaction parameter | 4.55 | 3.24 | 5.97 | 10.68 | 5.56 | 2.18 | 2.85 | 4.37 | -0.78 | 5.14 | 4.15 | 6.78 | 5.16 | 8.60 | 9.14 | 1.97 | 4.48 | 2.40 | 2.10 | 3.81 |
Normalized frequency of alpha-helix from LG | 1.30 | 1.30 | 0.93 | 1.23 | 0.90 | 1.32 | 1.02 | 1.09 | 0.92 | 0.63 | 1.04 | 0.78 | 1.43 | 0.80 | 0.63 | 1.03 | 1.33 | 0.71 | 0.87 | 0.95 |
Normalized frequency of alpha-helix from CF | 1.32 | 1.22 | 1.04 | 1.13 | 0.74 | 1.47 | 0.97 | 1.10 | 0.70 | 0.57 | 1.25 | 0.77 | 1.48 | 0.86 | 0.59 | 1.02 | 1.06 | 0.72 | 1.01 | 1.05 |
Normalized frequency of beta-sheet from LG | 0.81 | 1.03 | 1.03 | 0.77 | 0.81 | 0.96 | 0.71 | 1.13 | 1.12 | 0.75 | 1.03 | 1.02 | 0.59 | 1.19 | 0.94 | 1.24 | 0.85 | 1.35 | 1.47 | 1.44 |
Normalized frequency of beta-sheet from CF | 0.90 | 1.24 | 0.75 | 0.75 | 0.82 | 0.94 | 0.75 | 1.41 | 1.12 | 0.46 | 0.95 | 0.70 | 0.44 | 1.20 | 0.83 | 1.28 | 0.86 | 1.45 | 1.59 | 1.73 |
Normalized frequency of turn from LG | 0.84 | 0.49 | 0.91 | 0.95 | 1.48 | 0.52 | 1.28 | 0.88 | 0.69 | 1.47 | 1 | 1.29 | 0.78 | 1.05 | 1.76 | 0.88 | 0.53 | 1.28 | 0.55 | 0.51 |
Normalized frequency of turn from CF | 0.65 | 0.56 | 0.93 | 0.95 | 1.45 | 0.71 | 1.47 | 0.72 | 1.43 | 1.51 | 0.94 | 1.46 | 0.75 | 0.96 | 1.53 | 0.90 | 0.96 | 1.12 | 0.57 | 0.55 |
Normalized frequency of alpha-helix in all-alpha class | 1.08 | 1.04 | 0.93 | 1.01 | 1.05 | 1.11 | 0.86 | 0.96 | 1.22 | 0.91 | 0.95 | 0.95 | 1.09 | 1.15 | 0.85 | 1.17 | 1.02 | 0.80 | 0.98 | 1.03 |
Normalized frequency of alpha-helix in alpha+beta class | 1.34 | 1.39 | 0.91 | 1.08 | 0.83 | 0.90 | 1.06 | 1.02 | 1.27 | 0.48 | 1.13 | 1.05 | 1.69 | 0.74 | 0.47 | 0.64 | 1.11 | 0.73 | 0.84 | 1.18 |
Normalized frequency of alpha-helix in alpha/beta class | 1.15 | 1.22 | 1.06 | 1.20 | 0.87 | 1.45 | 1 | 0.92 | 1.03 | 0.72 | 1.43 | 0.84 | 1.37 | 0.97 | 0.64 | 1.11 | 0.95 | 0.72 | 0.99 | 0.82 |
Normalized frequency of beta-sheet in all-beta class | 0.89 | 1.02 | 1.06 | 1 | 0.67 | 1.41 | 0.71 | 1.32 | 1.04 | 0.69 | 1.06 | 0.86 | 0.72 | 1.15 | 0.87 | 1.06 | 1.04 | 1.35 | 1.14 | 1.66 |
Normalized frequency of beta-sheet in alpha+beta class | 0.82 | 0.94 | 0.99 | 0.73 | 1.27 | 1.30 | 0.98 | 1.56 | 0.71 | 0.69 | 1.01 | 0.65 | 0.54 | 0.98 | 0.94 | 1.25 | 1.26 | 1.26 | 1.67 | 1.22 |
Normalized frequency of beta-sheet in alpha/beta class | 0.98 | 1.05 | 1.03 | 0.83 | 0.66 | 0.82 | 0.74 | 1.23 | 1.01 | 0.73 | 0.63 | 0.98 | 0.59 | 1.20 | 0.90 | 1.26 | 1.17 | 1.23 | 1.38 | 1.62 |
Normalized frequency of turn in all-alpha class | 0.69 | 0 | 0 | 1.18 | 1.52 | 0.88 | 2.42 | 2.20 | 0 | 1.34 | 1.44 | 1.43 | 0.63 | 0.28 | 2.64 | 0 | 0.22 | 1.53 | 0.43 | 0.14 |
Normalized frequency of turn in all-beta class | 0.87 | 0.67 | 1.30 | 0.66 | 1.36 | 0 | 1.24 | 0.47 | 0.83 | 1.54 | 1.06 | 1.08 | 0.91 | 1.12 | 1.69 | 1.24 | 0.91 | 0.54 | 0.27 | 0.69 |
Normalized frequency of turn in alpha+beta class | 0.91 | 0.77 | 0.77 | 1.27 | 1.32 | 0.76 | 0.90 | 0.37 | 0.50 | 1.62 | 1.06 | 1.34 | 0.53 | 0.87 | 1.61 | 1.10 | 1.08 | 1.24 | 0.36 | 0.52 |
Normalized frequency of turn in alpha/beta class | 0.92 | 0.50 | 0.90 | 0.86 | 1.57 | 0.50 | 1.22 | 0.96 | 0.62 | 1.30 | 0.66 | 1.40 | 0.92 | 1.11 | 1.61 | 0.57 | 0.39 | 1.78 | 0.79 | 0.50 |
HPLC parameter | 2.1 | -9.2 | 4.2 | 5.7 | 7.0 | -4.2 | 10.0 | -9.2 | 1.4 | 2.1 | 6.0 | 6.5 | 7.8 | 5.2 | 5.7 | -10.0 | 2.1 | -1.9 | -8.0 | -3.7 |
Partition coefficient | -2.89 | -1.61 | -3.30 | -3.31 | -3.41 | -1.84 | -3.38 | -1.63 | -2.49 | -2.50 | -3.15 | -3.30 | -2.94 | -2.91 | -3.25 | -1.75 | -2.84 | -2.42 | -1.72 | -2.08 |
Surrounding hydrophobicity in folded form | 12.28 | 14.10 | 11.49 | 10.80 | 11 | 14.33 | 10.97 | 13.43 | 14.93 | 11.19 | 11.28 | 11.26 | 11.19 | 11.65 | 12.01 | 12.95 | 12.84 | 13.29 | 14.77 | 15.07 |
Average gain in surrounding hydrophobicity | 7.62 | 9.37 | 6.81 | 5.72 | 6.17 | 9.83 | 6.18 | 8.99 | 10.93 | 6.64 | 6.67 | 6.93 | 6.38 | 7.08 | 7.31 | 8.41 | 7.85 | 8.53 | 9.99 | 10.38 |
Average gain ratio in surrounding hydrophobicity | 2.63 | 2.98 | 2.45 | 2.12 | 2.27 | 3.18 | 2.29 | 3.02 | 3.36 | 2.46 | 2.45 | 2.60 | 2.31 | 2.55 | 2.55 | 2.85 | 2.57 | 2.79 | 3.08 | 3.21 |
Surrounding hydrophobicity in alpha-helix | 13.65 | 14.01 | 11.28 | 11.96 | 12.24 | 13.40 | 10.98 | 14.08 | 14.49 | 11.51 | 11.30 | 11.26 | 12.55 | 13 | 15.36 | 12.06 | 11.59 | 12.64 | 14.63 | 12.88 |
Surrounding hydrophobicity in beta-sheet | 14.60 | 16.49 | 13.24 | 13.28 | 11.79 | 16.23 | 13.78 | 14.18 | 15.90 | 14.10 | 12.02 | 13.36 | 13.59 | 14.50 | 14.18 | 13.90 | 15.35 | 14.76 | 14.10 | 16.30 |
Surrounding hydrophobicity in turn | 10.67 | 13.07 | 11.05 | 9.93 | 10.85 | 15 | 10.21 | 13.27 | 14.15 | 10.62 | 11.71 | 11.18 | 11.71 | 10.53 | 10.95 | 11.41 | 12.07 | 11.52 | 12.95 | 13.86 |
Accessibility reduction ratio | 3.70 | 5.88 | 2.53 | 1.79 | 2.12 | 5.21 | 2.60 | 6.60 | 3.03 | 2.12 | 2.70 | 2.43 | 3.30 | 2.60 | 3.13 | 6.25 | 3.57 | 3.03 | 7.69 | 7.14 |
Average number of surrounding residues | 6.05 | 7.37 | 5.70 | 4.88 | 5.04 | 6.39 | 4.95 | 6.62 | 7.86 | 5.65 | 5.45 | 5.53 | 5.10 | 5.81 | 6.16 | 6.98 | 5.80 | 6.73 | 7.51 | 7.62 |
Intercept in regression analysis | 0.305 | 0.262 | 0.227 | 0.391 | 0.322 | 0.280 | 0.335 | 0.195 | 0.339 | 0.346 | 0.306 | 0.326 | 0.282 | 0.251 | 0.352 | 0.291 | 0.215 | 0.293 | 0.278 | 0.291 |
Slope in regression analysis x 1.0E1 | 0.175 | 0.104 | 0.083 | 0.058 | 0.090 | 0.054 | 0.140 | 0.104 | 0.074 | 0.136 | 0.093 | 0.155 | 0.135 | 0.152 | 0.201 | 0.092 | 0.125 | 0.081 | 0.100 | 0.096 |
Correlation coefficient in regression analysis | 0.687 | 0.541 | 0.590 | 0.407 | 0.489 | 0.328 | 0.632 | 0.577 | 0.263 | 0.600 | 0.527 | 0.692 | 0.669 | 0.713 | 0.670 | 0.632 | 0.594 | 0.495 | 0.564 | 0.529 |
Hydrophobicity | -6.70 | -11.70 | 51.50 | 36.80 | 20.10 | -14.20 | 38.50 | -15.50 | -8.40 | 0.80 | 17.20 | -2.50 | 34.30 | -5 | -4.20 | -7.90 | 12.60 | 2.90 | -13 | -10.90 |
Relative frequency in alpha-helix | 1.29 | 1.30 | 0.96 | 1.23 | 0.90 | 1.47 | 1.04 | 1.07 | 1.11 | 0.52 | 1.27 | 0.82 | 1.44 | 0.82 | 0.56 | 0.99 | 1.22 | 0.72 | 0.97 | 0.91 |
Relative frequency in beta-sheet | 0.90 | 1.02 | 0.99 | 0.77 | 0.76 | 0.97 | 0.72 | 1.32 | 0.74 | 0.64 | 0.80 | 0.95 | 0.75 | 1.21 | 0.92 | 1.14 | 1.08 | 1.25 | 1.45 | 1.49 |
Relative frequency in reverse-turn | 0.78 | 0.59 | 0.88 | 0.96 | 1.28 | 0.39 | 1.41 | 0.58 | 0.80 | 1.91 | 0.97 | 1.33 | 1 | 1.03 | 1.64 | 0.75 | 0.69 | 1.05 | 0.51 | 0.47 |
Helix-coil equilibrium constant | 1.10 | 1.25 | 0.95 | 1 | 0.80 | 1.15 | 0.65 | 1.10 | 0.95 | 0.10 | 1 | 0.75 | 1 | 0.75 | 0.60 | 1.10 | 0.85 | 1.10 | 1.10 | 0.95 |
Beta-coil equilibrium constant | 1 | 2 | 0.70 | 0.70 | 0.60 | 1.90 | 0.50 | 3.10 | 1.90 | 0.20 | 1 | 0.90 | 0.70 | 1.70 | 0.30 | 2.20 | 0.80 | 2.80 | 4 | 4 |
Weights for alpha-helix at the window position of -6 | 0.12 | 0.05 | 0.04 | 0.26 | -0.10 | 0 | 0.01 | 0.05 | -0.25 | -0.19 | -0.03 | -0.19 | -0.02 | -0.04 | -0.02 | -0.06 | -0.06 | -0.14 | -0.07 | -0.03 |
Weights for alpha-helix at the window position of -5 | 0.26 | -0.02 | -0.14 | 0.12 | -0.03 | 0 | 0.15 | 0.12 | -0.15 | -0.08 | -0.13 | 0.01 | 0.21 | -0.34 | -0.37 | -0.01 | 0.10 | -0.29 | -0.03 | 0.02 |
Weights for alpha-helix at the window position of -4 | 0.64 | 0.41 | -0.10 | -0.17 | 0.09 | 0.13 | 0.33 | -0.03 | 0.03 | -0.43 | -0.23 | -0.10 | 0.51 | -0.07 | -0.09 | -0.02 | -0.23 | -0.38 | -0.22 | -0.01 |
Weights for alpha-helix at the window position of -3 | 0.29 | 0.47 | -0.03 | -0.19 | -0.04 | 0.27 | 0.11 | 0.24 | -0.05 | -0.34 | 0.26 | -0.17 | 0.28 | -0.20 | -0.67 | 0.25 | -0.26 | -0.30 | 0 | -0.01 |
Weights for alpha-helix at the window position of -2 | 0.68 | 0.61 | -0.22 | 0.03 | -0.09 | 0.39 | -0.02 | 0.06 | -0.15 | -0.76 | -0.15 | -0.26 | 0.44 | -0.10 | -0.73 | 0.20 | -0.14 | -0.04 | -0.08 | 0.12 |
Weights for alpha-helix at the window position of -1 | 0.34 | 0.20 | 0.22 | -0.11 | -0.33 | 0.43 | 0.06 | 0.15 | -0.18 | -0.81 | 0.01 | -0.35 | 0.20 | -0.37 | -0.88 | 0.07 | -0.09 | -0.31 | -0.03 | 0.13 |
Weights for alpha-helix at the window position of 0 | 0.57 | 0.48 | 0.23 | 0.16 | -0.36 | 0.41 | -0.46 | 0.03 | -0.15 | -1.12 | 0.15 | -0.47 | 0.26 | -0.54 | -0.71 | -0.10 | -0.05 | -0.35 | 0 | 0.31 |
Weights for alpha-helix at the window position of 1 | 0.33 | 0.57 | 0.10 | 0.23 | -0.19 | 0.79 | -0.44 | 0.48 | -0.03 | -1.86 | 0.19 | -0.23 | 0.21 | -0.33 | -0.46 | 0.15 | 0.27 | -0.19 | -0.33 | 0.24 |
Weights for alpha-helix at the window position of 2 | 0.13 | 0.50 | 0.08 | 0.37 | -0.07 | 0.63 | -0.71 | 0.15 | -0.09 | -1.40 | 0.12 | -0.28 | 0.13 | -0.21 | -0.39 | 0.02 | 0.32 | -0.10 | 0 | 0.17 |
Weights for alpha-helix at the window position of 3 | 0.31 | 0.56 | 0.18 | 0.47 | -0.10 | 0.58 | -0.81 | 0.10 | -0.26 | -1.33 | 0.41 | -0.49 | -0.06 | -0.44 | -0.42 | 0.14 | 0.51 | -0.08 | -0.15 | -0.01 |
Weights for alpha-helix at the window position of 4 | 0.21 | 0.70 | 0.07 | 0.28 | -0.04 | 0.61 | -0.58 | -0.06 | -0.12 | -1.03 | 0.13 | -0.28 | -0.23 | -0.25 | -0.15 | 0.21 | 0.37 | 0.16 | 0.31 | 0 |
Weights for alpha-helix at the window position of 5 | 0.18 | 0.62 | 0.21 | 0.41 | -0.03 | 0.21 | -0.32 | 0.05 | -0.29 | -0.84 | -0.27 | -0.05 | -0.25 | -0.16 | -0.40 | 0.32 | 0.28 | 0.11 | -0.03 | 0.06 |
Weights for alpha-helix at the window position of 6 | -0.08 | 0.28 | 0.05 | 0.45 | -0.08 | 0.11 | -0.24 | 0 | -0.25 | -0.42 | -0.28 | 0.07 | -0.19 | -0.33 | -0.10 | 0.36 | 0.29 | 0 | -0.01 | -0.13 |
Weights for beta-sheet at the window position of -6 | -0.18 | -0.23 | -0.13 | 0.03 | 0.28 | -0.42 | 0.05 | -0.18 | -0.26 | -0.13 | 0.21 | 0.41 | -0.06 | 0.33 | 0.23 | -0.10 | 0.24 | -0.10 | -0.42 | -0.07 |
Weights for beta-sheet at the window position of -5 | -0.01 | -0.25 | 0.02 | 0.08 | 0.41 | -0.57 | -0.09 | -0.12 | -0.27 | 0.26 | 0.01 | 0.44 | 0.09 | 0.35 | 0.13 | -0.15 | 0.22 | 0.15 | -0.27 | -0.09 |
Weights for beta-sheet at the window position of -4 | -0.19 | -0.42 | 0.03 | -0.09 | 0.02 | -0.38 | -0.06 | -0.32 | -0.29 | 0.05 | 0.02 | 0.25 | -0.10 | 0.22 | 0.19 | -0.19 | -0.16 | 0.05 | -0.08 | -0.15 |
Weights for beta-sheet at the window position of -3 | -0.14 | -0.57 | 0.14 | 0.04 | -0.27 | 0.24 | -0.10 | 0.08 | -0.64 | 0.02 | -0.11 | -0.12 | -0.39 | 0 | 0.46 | -0.10 | -0.04 | 0.18 | 0.16 | 0.29 |
Weights for beta-sheet at the window position of -2 | -0.31 | 0.09 | 0.25 | -0.29 | -0.53 | 0.29 | -0.54 | 0.24 | -0.06 | -0.31 | 0.07 | 0.11 | -0.52 | 0.03 | 0.37 | 0.15 | -0.32 | 0.29 | 0.57 | 0.48 |
Weights for beta-sheet at the window position of -1 | -0.10 | 0.32 | 0.19 | -0.46 | -0.89 | 0.43 | -0.89 | 0.36 | 0.13 | -0.91 | -0.04 | -0.12 | -0.34 | 0.49 | -0.45 | 0.34 | -0.34 | 0.42 | 0.95 | 0.76 |
Weights for beta-sheet at the window position of 0 | -0.25 | 0.23 | -0.02 | -0.59 | -0.77 | 0.32 | -1.01 | 0.48 | 0.13 | -1.24 | -0.12 | -0.31 | -0.62 | 0.17 | -0.72 | 0.45 | -0.16 | 0.77 | 1.10 | 0.69 |
Weights for beta-sheet at the window position of 1 | -0.26 | 0.25 | -0.09 | -0.55 | -0.34 | -0.05 | -0.55 | 0.20 | 0.47 | -1.28 | -0.33 | -0.28 | -0.75 | 0.08 | -0.56 | 0.22 | -0.04 | 0.53 | 0.94 | 0.67 |
Weights for beta-sheet at the window position of 2 | 0.05 | 0.32 | -0.11 | -0.51 | -0.40 | -0.10 | -0.11 | 0.20 | 0.36 | -0.79 | -0.67 | 0.03 | -0.35 | -0.15 | 0.14 | 0.09 | 0.02 | 0.34 | 0.47 | 0.58 |
Weights for beta-sheet at the window position of 3 | -0.44 | -0.12 | -0.13 | -0.33 | 0.05 | -0.21 | -0.20 | -0.13 | 0.13 | -0.48 | -0.58 | 0.27 | -0.28 | 0.47 | 0.08 | -0.22 | 0.09 | -0.11 | -0.04 | 0.06 |
Weights for beta-sheet at the window position of 4 | -0.31 | -0.44 | -0.10 | -0.44 | 0.06 | -0.28 | 0.13 | -0.04 | -0.11 | -0.29 | -0.47 | 0.34 | -0.05 | 0.27 | 0.45 | -0.08 | -0.06 | 0.06 | -0.25 | 0.11 |
Weights for beta-sheet at the window position of 5 | -0.02 | -0.26 | 0.04 | -0.39 | 0.03 | -0.14 | 0.11 | -0.03 | -0.02 | -0.04 | -0.17 | 0.41 | 0.10 | 0.36 | 0.38 | -0.01 | -0.09 | -0.08 | -0.48 | -0.18 |
Weights for beta-sheet at the window position of 6 | -0.06 | -0.46 | 0.02 | -0.43 | 0.10 | -0.52 | 0.24 | -0.33 | -0.19 | 0.37 | -0.04 | 0.43 | -0.04 | 0.50 | 0.17 | -0.32 | 0.19 | 0.35 | -0.20 | 0 |
Weights for coil at the window position of -6 | -0.05 | 0.04 | 0.06 | -0.42 | 0 | 0.25 | 0.15 | 0.09 | 0.30 | 0.31 | -0.08 | -0.11 | -0.02 | -0.06 | -0.14 | 0.19 | -0.07 | 0.33 | 0.26 | 0.04 |
Weights for coil at the window position of -5 | -0.19 | 0.34 | 0.17 | -0.20 | -0.38 | 0.45 | 0.09 | 0.07 | 0.41 | 0.04 | 0.04 | -0.23 | -0.20 | -0.02 | 0.28 | 0.16 | -0.19 | 0.22 | -0.06 | 0.05 |
Weights for coil at the window position of -4 | -0.43 | -0.10 | 0.06 | 0.33 | 0 | -0.01 | -0.31 | 0.25 | 0.19 | 0.28 | 0.14 | -0.23 | -0.41 | -0.26 | -0.21 | 0.15 | 0.21 | 0.09 | 0.29 | -0.10 |
Weights for coil at the window position of -3 | -0.19 | -0.22 | -0.07 | 0 | 0.17 | -0.53 | -0.27 | -0.31 | 0.42 | 0.14 | -0.29 | 0.22 | -0.22 | 0.10 | 0.17 | -0.15 | 0.17 | -0.02 | -0.34 | -0.33 |
Weights for coil at the window position of -2 | -0.25 | -0.55 | 0.12 | 0.14 | 0.61 | -0.47 | 0.60 | -0.29 | 0.18 | 0.89 | 0.09 | 0.24 | -0.12 | 0.16 | 0.09 | -0.44 | 0.42 | -0.19 | -0.54 | -0.45 |
Weights for coil at the window position of -1 | -0.27 | -0.54 | -0.40 | 0.45 | 0.71 | -0.76 | 0.54 | -0.47 | 0 | 1.40 | -0.08 | 0.40 | -0.12 | -0.10 | 1.14 | -0.46 | 0.18 | -0.05 | -0.74 | -0.86 |
Weights for coil at the window position of 0 | -0.42 | -0.69 | -0.23 | 0.09 | 0.81 | -0.86 | 0.95 | -0.39 | -0.18 | 1.77 | -0.01 | 0.63 | -0.09 | 0.29 | 1.24 | -0.37 | 0.05 | -0.41 | -1.17 | -1.32 |
Weights for coil at the window position of 1 | -0.24 | -0.80 | -0.04 | 0.17 | 0.45 | -0.71 | 0.65 | -0.61 | -0.38 | 2.27 | 0.01 | 0.33 | 0.07 | 0.13 | 0.85 | -0.44 | -0.21 | -0.49 | -0.65 | -0.99 |
Weights for coil at the window position of 2 | -0.14 | -0.80 | 0.21 | -0.14 | 0.35 | -0.56 | 0.66 | -0.25 | -0.09 | 1.59 | 0.11 | 0.32 | 0.06 | 0.21 | 0.36 | -0.17 | -0.31 | -0.35 | -0.51 | -0.70 |
Weights for coil at the window position of 3 | 0.01 | -0.81 | -0.13 | -0.43 | -0.11 | -0.49 | 0.78 | -0.20 | -0.31 | 1.14 | -0.13 | 0.13 | 0.09 | -0.02 | 0.14 | -0.20 | -0.56 | 0.10 | -0.09 | -0.11 |
Weights for coil at the window position of 4 | -0.30 | -0.18 | -0.09 | 0.06 | -0.12 | -0.44 | 0.44 | 0.11 | 0.03 | 0.77 | 0.24 | -0.09 | 0.18 | -0.27 | -0.12 | -0.09 | -0.20 | -0.25 | -0.07 | -0.06 |
Weights for coil at the window position of 5 | -0.23 | -0.36 | -0.20 | -0.15 | 0.06 | -0.19 | 0.34 | -0.02 | 0.19 | 0.78 | 0.47 | -0.29 | 0.28 | -0.30 | 0.14 | -0.18 | -0.22 | 0.07 | 0.42 | 0.29 |
Weights for coil at the window position of 6 | 0.08 | 0.24 | -0.01 | -0.27 | -0.06 | 0.16 | 0.04 | 0.34 | 0.37 | 0.16 | 0.48 | -0.35 | 0.36 | -0.04 | -0.02 | -0.06 | -0.45 | -0.20 | 0.09 | 0.18 |
Average reduced distance for C-alpha | 0.934 | 0.825 | 0.962 | 1.040 | 0.986 | 0.804 | 0.994 | 0.773 | 0.900 | 1.047 | 1.047 | 1.056 | 0.986 | 1.008 | 1.015 | 0.848 | 0.882 | 0.931 | 0.766 | 0.825 |
Average reduced distance for side chain | 0.941 | 0.798 | 1.112 | 1.232 | 1.038 | 0.781 | 1.071 | 0.723 | 0.866 | 1.093 | 1.150 | 1.082 | 1.100 | 1.043 | 1.055 | 0.867 | 0.911 | 1.050 | 0.742 | 0.817 |
Side chain orientational preference | 1.16 | 0.51 | 1.72 | 3.90 | 1.97 | 0.40 | 2.66 | 0.43 | 0.50 | 2.04 | 3.87 | 1.61 | 2.40 | 1.48 | 1.63 | 0.75 | 0.86 | 1.72 | 0.57 | 0.59 |
Average relative fractional occurrence in A | 0.85 | 1.03 | 2.02 | 0.88 | 0.88 | 1.17 | 1.50 | 0.85 | 0.90 | 1.47 | 1.71 | 1.50 | 1.79 | 1.96 | 1.54 | 0.83 | 1.59 | 1.34 | 0.67 | 0.89 |
Average relative fractional occurrence in A | 1.58 | 1.21 | 1.14 | 1.27 | 0.77 | 1.41 | 0.98 | 1 | 1.04 | 1.46 | 1.24 | 1.05 | 1.49 | 0.87 | 0.66 | 1.23 | 0.99 | 0.68 | 1.09 | 0.88 |
Average relative fractional occurrence in A | 0.82 | 0 | 2.60 | 2.86 | 2.07 | 0 | 2.64 | 0 | 0 | 0 | 0 | 1.23 | 2.62 | 2.48 | 1.63 | 0 | 0 | 1.90 | 2.32 | 1.62 |
Average relative fractional occurrence in E | 0.78 | 0.91 | 1.75 | 0.85 | 1.32 | 0.41 | 1.25 | 1.07 | 3.14 | 1.73 | 0.93 | 1.31 | 0.94 | 1.57 | 1.13 | 0.98 | 1.03 | 1.31 | 1.26 | 1.11 |
Average relative fractional occurrence in E | 0.88 | 1.09 | 0.99 | 0.83 | 1.02 | 1.71 | 1.16 | 1.52 | 1.14 | 0.87 | 0.93 | 1.14 | 1.01 | 0.96 | 0.70 | 1.96 | 1.87 | 1.68 | 1.61 | 1.56 |
Average relative fractional occurrence in E | 0.30 | 0.96 | 0.90 | 0.71 | 2.73 | 1.89 | 1.26 | 1.20 | 0.72 | 0.83 | 0.97 | 1.16 | 1.33 | 0.97 | 3.09 | 1.58 | 1.33 | 0.86 | 0.45 | 0.64 |
Average relative fractional occurrence in A | 0.40 | 0.57 | 1.20 | 0.87 | 1.24 | 0 | 1.59 | 1.27 | 2.98 | 0.38 | 0.50 | 0.92 | 1.26 | 1.38 | 1.89 | 1.53 | 2.71 | 1.79 | 1.31 | 0.95 |
Average relative fractional occurrence in A | 1.48 | 1.33 | 1.02 | 1.36 | 0.99 | 1.41 | 1.19 | 1.30 | 0.86 | 0.25 | 1.42 | 0.89 | 1.43 | 0.81 | 0.46 | 1.27 | 1.27 | 0.91 | 1.12 | 0.93 |
Average relative fractional occurrence in A | 0 | 0 | 0 | 0 | 4.14 | 0 | 2.15 | 2.11 | 0 | 1.99 | 0 | 0 | 0 | 1.24 | 6.49 | 0 | 0 | 1.90 | 0 | 0 |
Average relative fractional occurrence in E | 1.02 | 1.06 | 1 | 0.94 | 1.31 | 1.33 | 1.76 | 0.41 | 1.05 | 2.73 | 1.05 | 1.18 | 0.83 | 0.77 | 2.39 | 1.22 | 0.40 | 1.09 | 0.83 | 0.88 |
Average relative fractional occurrence in E | 0.93 | 1.03 | 1.52 | 1 | 0.92 | 1.31 | 0.60 | 1.51 | 1.08 | 1.37 | 0.94 | 0.97 | 0.73 | 1.38 | 0.78 | 1.12 | 1.08 | 1.65 | 1.74 | 1.70 |
Average relative fractional occurrence in E | 0.99 | 1.26 | 1.19 | 0.91 | 1.15 | 1 | 1.18 | 1.25 | 2.32 | 0 | 1.52 | 1.50 | 1.36 | 1.18 | 1.40 | 1.33 | 1.06 | 1.09 | 0.81 | 1.01 |
Value of thet | 17.05 | 10.89 | 21.25 | 16.46 | 34.81 | 20.61 | 19.27 | 16.26 | 28.84 | 23.94 | 15.42 | 19.95 | 20.12 | 18.92 | 38.14 | 23.36 | 23.07 | 26.49 | 16.66 | 17.06 |
Value of thet | 14.53 | 14.30 | 17.82 | 14.07 | 13.59 | 20.61 | 19.78 | 19.61 | 30.57 | 52.63 | 22.18 | 18.56 | 18.19 | 21.09 | 37.16 | 19.78 | 22.63 | 26.36 | 20.28 | 21.87 |
Transfer free energy from chx to wat | 1.81 | 4.92 | -14.92 | -5.55 | -6.64 | 2.35 | -8.72 | 2.98 | 1.28 | 0 | -5.54 | -3.40 | -6.81 | -2.57 | 0.94 | 2.33 | -4.66 | -0.14 | 4.92 | 4.04 |
Transfer free energy from oct to wat | 0.52 | 1.76 | -1.32 | 0.08 | -0.01 | 1.32 | 0 | 2.09 | 0 | 0 | -0.07 | 0.04 | -0.79 | 0.27 | 0 | 2.51 | 0.95 | 1.63 | 2.04 | 1.18 |
Transfer free energy from vap to chx | 0.13 | -2.64 | -5 | -3.97 | -3.04 | -3.83 | -2.23 | -3.74 | -2.52 | 0 | -3.84 | -1.66 | -3.43 | -2.31 | 1.45 | -8.21 | -5.61 | -5.97 | -2.77 | -2.05 |
Transfer free energy from chx to oct | 1.29 | 3.16 | -13.60 | -5.63 | -6.63 | 1.03 | 0 | 0.89 | 0 | 0 | -5.47 | -3.44 | -6.02 | -2.84 | 0.94 | -0.18 | -5.61 | -1.77 | 2.88 | 2.86 |
Transfer free energy from vap to oct | 1.42 | 0.52 | -18.60 | -9.60 | -9.67 | -2.80 | 0 | -2.85 | 0 | 0 | -9.31 | -5.10 | -9.45 | -5.15 | 2.39 | -8.39 | -11.22 | -7.74 | 0.11 | 0.81 |
Accessible surface area | 93.7 | 173.7 | 250.4 | 215.2 | 146.3 | 197.6 | 142.6 | 228.6 | 135.2 | 0 | 177.7 | 109.5 | 182.9 | 142.1 | 52.6 | 271.6 | 188.1 | 239.9 | 182.2 | 157.2 |
Energy transfer from out to i | -0.29 | -0.12 | -2.71 | -2.05 | -1.18 | -0.24 | -1.02 | 0 | 0 | 0 | -1.53 | -0.75 | -0.90 | -0.71 | -0.34 | -0.59 | -0.94 | -1.02 | 0.24 | 0.09 |
Mean polarity | -0.06 | 1.21 | -0.84 | -1.18 | -0.48 | 1.27 | -0.80 | 1.27 | 1.36 | 0 | -0.73 | -0.50 | -0.77 | -0.27 | -0.41 | 0.88 | 0.49 | 0.33 | 1.31 | 1.09 |
Relative preference value at N" | 0.7 | 0.9 | 0.4 | 1 | 1.2 | 0.3 | 1.4 | 1.2 | 0.6 | 0.7 | 1 | 1.6 | 1 | 0.3 | 1.6 | 1.1 | 1.2 | 1.9 | 0.9 | 0.7 |
Relative preference value at N' | 0.7 | 0.9 | 0.4 | 1 | 1.2 | 0.3 | 1.4 | 1.2 | 0.6 | 0.7 | 1 | 1.6 | 1 | 0.3 | 1.6 | 1.1 | 1.2 | 1.9 | 0.9 | 0.7 |
Relative preference value at N-cap | 0.5 | 0.2 | 0.4 | 0.7 | 3.5 | 0.8 | 2.1 | 0.2 | 0.6 | 0.8 | 0.4 | 2.3 | 0.4 | 1.6 | 1.8 | 0.3 | 1.1 | 0.8 | 0.2 | 0.1 |
Relative preference value at N1 | 1.2 | 0.9 | 0.7 | 0.6 | 0.7 | 0.3 | 0.8 | 0.5 | 0.8 | 2.6 | 0.7 | 0.7 | 2.2 | 0.8 | 0.3 | 2.1 | 0.7 | 1.8 | 0.9 | 1.1 |
Relative preference value at N2 | 1.6 | 0.3 | 0.9 | 1 | 0.7 | 1 | 2.6 | 0.9 | 1.2 | 0.5 | 0.8 | 0.8 | 2 | 0.7 | 0.9 | 1.7 | 0.7 | 0.4 | 0.7 | 0.6 |
Relative preference value at N3 | 1 | 0.6 | 0.4 | 0.8 | 0.7 | 1 | 2.2 | 0.6 | 0.6 | 0.4 | 1.5 | 0.4 | 3.3 | 1 | 0.6 | 1.4 | 0.7 | 1.2 | 0.4 | 1.1 |
Relative preference value at N4 | 1.1 | 2.6 | 1.5 | 0.8 | 0 | 1.7 | 0.3 | 1.9 | 1.1 | 0.1 | 1.3 | 0.4 | 0.5 | 0.5 | 0.4 | 3.1 | 1.5 | 0.6 | 1.1 | 1.5 |
Relative preference value at N5 | 1.4 | 1.1 | 1.2 | 1.9 | 1.2 | 1.7 | 0.6 | 1 | 1.6 | 0.3 | 1.4 | 1.1 | 0.9 | 0.6 | 0.6 | 1.4 | 0.9 | 0.2 | 0.9 | 0.8 |
Relative preference value at Mid | 1.8 | 1.2 | 1.3 | 1.1 | 0.9 | 1.5 | 1 | 1.3 | 0.7 | 0.3 | 1.3 | 0.6 | 0.8 | 1 | 0.5 | 1.5 | 1 | 0.8 | 1.2 | 1.2 |
Relative preference value at C5 | 1.8 | 1.2 | 1 | 1.4 | 0.6 | 2.7 | 0.7 | 1.9 | 0 | 0.3 | 1 | 0.5 | 1.1 | 0.5 | 0.5 | 1.1 | 2.4 | 1.3 | 1.3 | 0.4 |
Relative preference value at C4 | 1.3 | 1.4 | 0.8 | 1 | 0.6 | 2.8 | 0.5 | 2.9 | 0.7 | 0 | 0.2 | 0.5 | 0.7 | 0.6 | 0.5 | 2.1 | 1.9 | 0.8 | 1.6 | 1.4 |
Relative preference value at C3 | 0.7 | 1.9 | 0.8 | 2.2 | 0.8 | 1 | 0.6 | 1.8 | 0.2 | 0 | 1.3 | 0.6 | 1.6 | 0.7 | 0.1 | 0.4 | 1.1 | 1.1 | 1.4 | 1.3 |
Relative preference value at C2 | 1.4 | 0.8 | 2.1 | 1.9 | 0.9 | 1.3 | 0.7 | 0.3 | 1.2 | 0.2 | 1.6 | 1.6 | 1.7 | 0.9 | 0.2 | 0.4 | 1.8 | 0.3 | 0.4 | 0.7 |
Relative preference value at C1 | 1.1 | 0.7 | 1 | 2 | 1.2 | 1 | 0.4 | 0.7 | 1.6 | 0 | 2.1 | 1.7 | 0.8 | 1 | 0.2 | 0 | 3.4 | 1.2 | 0.7 | 0.7 |
Relative preference value at C-cap | 0.8 | 0.7 | 0.9 | 1.3 | 1.6 | 0.8 | 0.7 | 0.5 | 0.4 | 0.7 | 0.9 | 0.8 | 0.3 | 0.3 | 3.9 | 0 | 1.3 | 0.8 | 0.7 | 0.2 |
Relative preference value at C' | 1 | 0.9 | 1.4 | 1.2 | 0.9 | 0.8 | 1.4 | 0.1 | 0.8 | 1.9 | 1.4 | 0.7 | 0.8 | 0.8 | 1.2 | 0.4 | 1.2 | 0.9 | 1.1 | 0.6 |
Relative preference value at C" | 0.7 | 0.5 | 1.1 | 1.3 | 1.5 | 0 | 1.4 | 1.2 | 0.4 | 1.5 | 1.1 | 0.9 | 0.7 | 2.1 | 0.6 | 2.7 | 1 | 0.5 | 0.7 | 1 |
Information measure for alpha-helix | 6.5 | 3.2 | -0.9 | 2.3 | -5.1 | 5.3 | 0.5 | 1.6 | -1.3 | -7.7 | 1.0 | -3.9 | 7.8 | -2.6 | -8.6 | 1.2 | 1.2 | -4.5 | 0.6 | 1.4 |
Information measure for N-terminal helix | 2.3 | -2.1 | -5.2 | -4.1 | 0.3 | -3.5 | 7.4 | -1.1 | 0.8 | 8.1 | -0.7 | -3.5 | 10.3 | 2.3 | -5.2 | -0.9 | -2.8 | -3.7 | -4.0 | -4.4 |
Information measure for middle helix | 6.7 | 5.5 | 0.3 | 0.5 | -6.1 | 7.2 | -3.1 | 2.8 | -4.9 | -22.8 | 0.6 | -3.0 | 2.2 | -4.0 | -6.8 | 4.0 | -1.0 | -4.6 | 3.2 | 2.5 |
Information measure for C-terminal helix | 2.3 | 0.1 | 1.4 | 7.3 | -3.3 | 3.5 | -4.4 | 1.6 | 6.1 | -24.4 | 2.7 | -1.9 | 2.5 | -3.7 | -8.3 | -0.9 | 5.9 | -0.6 | -0.5 | 2.3 |
Information measure for extended | -2.3 | 2.3 | 0.4 | -3.3 | -4.1 | 2.3 | -4.4 | 2.6 | 4.4 | -1.8 | 1.2 | -1.7 | -5.0 | 1.3 | -4.2 | -1.0 | -2.5 | 4.0 | 6.7 | 6.8 |
Information measure for pleated-sheet | -2.7 | 3.7 | 0.4 | -2.9 | -4.2 | 3.7 | -4.4 | 3.0 | 3.7 | -6.6 | 0.8 | -2.4 | -8.1 | 1.7 | -3.9 | 0.3 | -3.0 | 3.3 | 7.7 | 7.1 |
Information measure for extended without H-bond | 0.0 | -3.7 | 1.1 | -3.1 | -2.0 | -2.1 | -2.6 | 0.7 | 5.4 | 7.4 | 2.4 | 1.3 | 3.1 | 0.0 | -3.4 | -3.4 | 0.8 | 4.8 | -0.1 | 2.7 |
Information measure for turn | -5.0 | -5.6 | 2.1 | 1.0 | 4.2 | -4.8 | 3.1 | -1.8 | 4.4 | 2.6 | 0.4 | 2.6 | -4.7 | 0.3 | 5.7 | 3.4 | -0.3 | 2.9 | -4.6 | -6.0 |
Information measure for N-terminal turn | -3.3 | -2.3 | 0.0 | -1.2 | 5.4 | -4.3 | 3.9 | 0.8 | -0.3 | 6.5 | -0.4 | 1.8 | -1.8 | -0.7 | -1.2 | -0.8 | 3.0 | 3.1 | -0.5 | -3.5 |
Information measure for middle turn | -4.7 | -6.2 | 2.0 | 2.8 | 3.9 | -4.8 | 1.9 | -3.7 | 6.2 | 3.6 | -2.0 | 2.1 | -4.2 | 0.6 | 5.7 | 3.3 | -2.6 | 3.8 | -7.0 | -6.2 |
Information measure for C-terminal turn | -3.7 | -2.8 | 1.0 | 1.3 | -0.6 | -1.6 | -0.6 | 1.6 | 4.0 | -6.0 | 3.4 | 1.5 | -4.3 | 1.2 | 5.9 | 6.5 | -0.8 | 1.3 | -0.5 | -4.6 |
Information measure for coil | -2.5 | -2.0 | -1.2 | -0.8 | 4.6 | -4.1 | 0.0 | -4.1 | -4.7 | 5.8 | -0.5 | 2.5 | -4.4 | 1.7 | 4.9 | 1.2 | 1.6 | -0.6 | -3.3 | -3.5 |
Information measure for loop | -5.1 | -5.4 | 2.6 | 1.0 | 4.7 | -5.3 | 3.1 | -2.4 | 3.8 | 3.5 | 0.2 | 3.2 | -5.2 | 0.0 | 5.6 | 2.9 | -0.9 | 3.2 | -4.5 | -6.3 |
Hydration free energy | -1.0 | 2.0 | 0.3 | -0.9 | -0.7 | 1.8 | -1.2 | 2.8 | 2.1 | 0.4 | -0.1 | -1.2 | -0.7 | -0.5 | 0.3 | 3.0 | 1.1 | 2.1 | 4.0 | 1.4 |
Mean area buried on transfer | 86.6 | 164.1 | 162.2 | 115.5 | 103.3 | 172.9 | 97.8 | 194.1 | 132.3 | 92.9 | 119.2 | 85.6 | 113.9 | 106.5 | 62.9 | 224.6 | 155.8 | 177.7 | 158.0 | 141.0 |
Mean fractional area loss | 0.74 | 0.85 | 0.64 | 0.52 | 0.63 | 0.85 | 0.62 | 0.88 | 0.91 | 0.64 | 0.62 | 0.66 | 0.62 | 0.70 | 0.72 | 0.85 | 0.78 | 0.76 | 0.88 | 0.86 |
Side chain hydropathy, uncorrected for solvation | -0.67 | -3.02 | 12.1 | 6.13 | 7.23 | -1.30 | 8.72 | -3.24 | -0.34 | -1.75 | 6.39 | 4.35 | 7.35 | 3.86 | 0 | -2.86 | 3.82 | 0.98 | -3.02 | -2.18 |
Side chain hydropathy, corrected for solvation | -0.67 | -3.02 | 3.89 | 2.46 | 2.27 | -1.67 | 1.57 | -3.24 | -2 | -1.75 | 2.12 | 0.10 | 1.78 | -0.42 | 0 | -2.86 | 1.09 | 0.98 | -3.02 | -2.18 |
Loss of Side chain hydropathy by helix formation | 0.4 | 0.6 | 0.3 | 0.4 | 0.9 | 0.3 | 0.8 | 0.7 | 0.5 | 0.9 | 0.7 | 0.4 | 1.3 | 0.4 | 0.0 | 0.6 | 1.0 | 1.2 | 0.4 | 0.4 |
Transfer free energy | 0.73 | 2.49 | 0.73 | 1.50 | -0.01 | 1.30 | 0.54 | 2.65 | 0.70 | 2.60 | -0.10 | 0.04 | 0.55 | 0.44 | 0 | 3 | 1.10 | 2.97 | 2.97 | 1.69 |
Principal component I | 0.239 | 0.281 | 0.211 | 0.228 | 0.249 | 0.253 | 0.171 | 0.234 | 0.220 | 0.165 | 0.260 | 0.236 | 0.187 | 0.213 | 0.160 | 0.183 | 0.205 | 0.193 | 0.273 | 0.255 |
Principal component II | 0.330 | 0.129 | -0.176 | -0.075 | -0.233 | -0.092 | -0.371 | -0.011 | 0.074 | 0.370 | -0.254 | 0.022 | -0.409 | 0.136 | 0.370 | -0.011 | -0.078 | -0.138 | 0.149 | 0.245 |
Principal component III | -0.110 | -0.008 | 0.079 | 0.049 | -0.136 | -0.041 | -0.285 | 0.438 | -0.184 | -0.016 | -0.067 | -0.153 | -0.246 | -0.208 | -0.073 | 0.493 | 0.320 | 0.381 | 0.001 | -0.155 |
Principal component IV | -0.062 | -0.264 | -0.167 | -0.371 | 0.166 | 0.077 | -0.079 | 0.074 | 0.380 | -0.036 | -0.025 | 0.470 | -0.184 | 0.348 | -0.017 | 0.050 | 0.056 | 0.220 | -0.309 | -0.212 |
Zimm-Bragg parameter s at 20 C | 1.071 | 1.140 | 1.033 | 0.939 | 0.784 | 1.200 | 0.680 | 1.086 | 0.922 | 0.659 | 0.977 | 0.760 | 0.970 | 0.817 | 0.591 | 1.107 | 0.850 | 1.020 | 1.140 | 0.950 |
Zimm-Bragg parameter sigma x 1.0E4 | 8.0 | 33.0 | 0.1 | 1.0 | 0.1 | 54.0 | 70.0 | 18.0 | 26.0 | 42.0 | 33.0 | 0.1 | 6.0 | 0.1 | 0.1 | 77.0 | 0.1 | 66.0 | 55.0 | 0.1 |
Optimal matching hydrophobicity | -0.40 | 1.22 | -0.59 | -0.67 | -0.92 | 1.02 | -1.31 | 1.92 | 0.17 | -0.49 | -0.91 | -0.55 | -1.22 | -0.28 | -0.67 | 0.50 | -0.64 | 1.67 | 1.25 | 0.91 |
Normalized frequency of alpha-helix | 1.42 | 1.29 | 1.06 | 1.24 | 0.71 | 1.21 | 1.01 | 1.16 | 0.73 | 0.65 | 1.02 | 0.71 | 1.63 | 0.78 | 0.50 | 1.05 | 1.20 | 0.67 | 1.12 | 0.99 |
Normalized frequency of isolated helix | 0.946 | 1.192 | 1.128 | 1.203 | 0.432 | 0.000 | 1.311 | 0.963 | 0.481 | 2.093 | 1.615 | 0.523 | 0.698 | 1.961 | 0.360 | 1.925 | 2.168 | 0.802 | 1.283 | 0.409 |
Normalized frequency of extended structure | 0.790 | 1.111 | 1.087 | 0.735 | 0.832 | 1.092 | 0.530 | 1.052 | 1.268 | 1.249 | 1.038 | 1.093 | 0.643 | 1.214 | 0.725 | 1.114 | 0.864 | 1.340 | 1.361 | 1.428 |
Normalized frequency of chain reversal R | 1.194 | 0.595 | 0.795 | 1.060 | 0.659 | 0.831 | 1.056 | 0.377 | 0.678 | 3.159 | 1.290 | 1.444 | 0.928 | 1.172 | 1.015 | 0.452 | 0.611 | 0.816 | 0.603 | 0.640 |
Normalized frequency of chain reversal S | 0.497 | 0.656 | 0.677 | 0.932 | 2.072 | 0.425 | 1.498 | 1.348 | 1.348 | 0.179 | 0.711 | 1.151 | 0.651 | 0.749 | 1.848 | 1.283 | 1.474 | 1.283 | 0.471 | 0.654 |
Normalized frequency of chain reversal D | 0.937 | 0.808 | 1.725 | 1.254 | 1.080 | 0.886 | 1.640 | 0.803 | 1.004 | 0.748 | 1.078 | 1.145 | 0.679 | 1.487 | 0.901 | 0.803 | 1.085 | 1.227 | 0.178 | 0.625 |
Normalized frequency of left-handed helix | 0.289 | 0.000 | 1.380 | 1.288 | 3.169 | 0.000 | 0.917 | 0.393 | 1.767 | 0.000 | 2.372 | 0.160 | 0.285 | 0.218 | 4.259 | 0.000 | 1.061 | 0.654 | 0.262 | 0.167 |
Normalized frequency of zeta R | 0.328 | 0.414 | 2.088 | 0.835 | 1.498 | 0.982 | 3.379 | 1.336 | 0.000 | 0.415 | 0.000 | 1.089 | 0.000 | 1.732 | 0.500 | 1.781 | 1.204 | 0.000 | 2.078 | 0.946 |
Normalized frequency of coil | 0.945 | 0.758 | 0.364 | 0.947 | 1.202 | 1.028 | 1.315 | 0.622 | 0.932 | 0.579 | 0.704 | 1.140 | 1.014 | 0.863 | 2.355 | 0.777 | 0.525 | 0.907 | 0.673 | 0.561 |
Normalized frequency of chain reversal | 0.842 | 0.665 | 0.936 | 1.045 | 1.352 | 0.668 | 1.366 | 0.881 | 1.032 | 1.385 | 0.998 | 1.257 | 0.758 | 1.055 | 1.349 | 0.881 | 1.079 | 1.101 | 0.459 | 0.643 |
Relative population of conformational state A | 0.135 | 0.215 | 0.296 | 0.170 | 0.196 | 0.239 | 0.289 | 0.087 | 0.159 | 0.151 | 0.236 | 0.010 | 0.184 | 0.100 | 0.051 | 0.166 | 0.223 | 0.066 | 0.173 | 0.285 |
Relative population of conformational state C | 0.507 | 0.619 | 0.459 | 0.559 | 0.287 | 0.431 | 0.223 | 0.077 | 0.592 | 0.739 | 0.383 | 0.689 | 0.445 | 0.785 | 0.390 | 0.160 | 0.310 | 0.060 | 0.111 | 0.356 |
Relative population of conformational state E | 0.159 | 0.083 | 0.194 | 0.159 | 0.385 | 0.198 | 0.283 | 0.682 | 0.187 | 0.366 | 0.236 | 0.150 | 0.206 | 0.074 | 0.049 | 0.463 | 0.233 | 0.737 | 0.581 | 0.301 |
Electron-ion interaction potential | .03731 | .00000 | .09593 | .03710 | .00359 | .08226 | .12630 | .09460 | .08292 | .01979 | .07606 | .08292 | .00580 | .09408 | .00499 | .05481 | .02415 | .05159 | .00000 | .00569 |
Bitterness | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 1 | 1 |
Transfer free energy to lipophilic phase | -12.04 | -17.79 | 39.23 | 9.71 | 4.25 | -8.86 | 23.22 | -21.98 | 3.95 | 5.82 | 2.16 | -1.54 | 16.81 | -4.15 | -7.85 | -16.19 | 6.28 | -1.51 | -18.32 | -16.22 |
Average interactions per side chain atom | 10.04 | 8.79 | 6.18 | 4.40 | 5.63 | 9.15 | 5.76 | 7.98 | 8.89 | 7.79 | 5.41 | 7.08 | 5.37 | 7 | 7.99 | 8.07 | 7.49 | 6.90 | 8.72 | 8.88 |
RF value in high salt chromatography | 0.89 | 0.73 | 0.88 | 0.97 | 0.89 | 0.74 | 0.87 | 0.52 | 0.85 | 0.82 | 0.82 | 0.96 | 0.84 | 0.92 | 0.92 | 0.20 | 0.83 | 0.49 | 0.76 | 0.85 |
Propensity to be buried inside | 0.52 | 0.77 | 0.49 | 0.31 | 0.42 | 0.76 | 0.37 | 0.87 | 0.83 | 0.35 | 0.35 | 0.49 | 0.38 | 0.38 | 0.41 | 0.86 | 0.70 | 0.64 | 0.79 | 0.72 |
Free energy change of epsilo | 0.16 | -0.44 | -0.20 | -0.12 | 1.03 | -0.79 | -0.24 | -0.25 | -0.12 | -0.59 | -0.55 | -0.01 | -0.45 | 0.05 | -0.16 | -0.33 | -0.18 | -0.42 | -0.19 | -0.46 |
Free energy change of alph | 0.15 | 0.06 | -0.37 | -0.16 | 0.69 | 0.11 | -0.22 | 1.18 | -0.19 | 0.11 | -0.06 | 0.13 | 0.14 | 0.28 | 0.36 | -0.12 | -0.25 | 0.19 | 0.02 | -0.08 |
Free energy change of epsilo | -0.07 | -0.17 | -0.40 | -0.45 | -0.57 | 0.03 | -0.80 | 0.40 | 0.17 | -0.47 | -0.26 | -0.11 | -0.63 | 0.09 | 0.27 | -0.61 | -0.49 | -0.61 | 0.06 | -0.11 |
Polar requirement | 7.0 | 4.9 | 9.1 | 10.1 | 10.0 | 5.3 | 13.0 | 5.0 | 5.5 | 6.6 | 8.6 | 7.5 | 12.5 | 6.6 | 7.9 | 5.3 | 8.4 | 5.7 | 4.9 | 5.6 |
Hydration potential | 1.94 | 2.28 | -19.92 | -9.52 | -9.68 | -1.48 | -10.95 | -0.76 | -1.24 | -3.68 | -9.38 | -5.06 | -10.20 | -4.88 | 2.39 | -5.88 | -10.27 | -6.11 | 2.15 | 1.99 |
Principal property value z1 | 0.07 | -4.19 | 2.88 | 2.84 | 3.22 | -2.49 | 3.64 | -4.92 | 0.71 | -1.22 | 2.18 | 1.96 | 3.08 | 0.92 | 2.23 | -4.75 | 2.41 | -1.39 | -4.44 | -2.69 |
Principal property value z2 | -1.73 | -1.03 | 2.52 | 1.41 | 1.45 | -0.27 | 1.13 | 1.30 | -0.97 | 0.88 | 0.53 | -1.63 | 0.39 | -2.09 | -5.36 | 3.65 | 1.74 | 2.32 | -1.68 | -2.53 |
Principal property value z3 | 0.09 | -0.98 | -3.44 | -3.14 | 0.84 | -0.41 | 2.36 | 0.45 | 4.13 | 2.23 | -1.14 | 0.57 | -0.07 | -1.40 | 0.30 | 0.85 | 1.11 | 0.01 | -1.03 | -1.29 |
Unfolding Gibbs energy in water, pH7.0 | 8.5 | 15.0 | 0 | 7.9 | 8.2 | 13.3 | 8.5 | 11.2 | 11.0 | 8.2 | 6.3 | 7.4 | 8.8 | 8.8 | 7.1 | 9.9 | 10.1 | 8.8 | 16.8 | 12.0 |
Unfolding Gibbs energy in water, pH9.0 | 6.8 | 12.2 | 0 | 7.5 | 6.2 | 8.4 | 7.0 | 8.3 | 8.3 | 6.9 | 8.5 | 8.0 | 4.9 | 7.0 | 6.4 | 5.7 | 9.2 | 6.8 | 10.0 | 9.4 |
Activation Gibbs energy of unfolding, pH7.0 | 18.08 | 18.60 | 0 | 17.96 | 17.47 | 18.11 | 17.36 | 17.30 | 18.17 | 18.16 | 17.93 | 17.57 | 18.16 | 17.54 | 18.24 | 17.19 | 18.49 | 17.99 | 18.62 | 18.30 |
Activation Gibbs energy of unfolding, pH9.0 | 18.56 | 19.01 | 0 | 18.36 | 18.24 | 18.49 | 17.94 | 17.95 | 17.84 | 18.77 | 18.51 | 18.06 | 17.97 | 17.71 | 18.57 | 16.87 | 18.64 | 18.23 | 19.21 | 18.98 |
Dependence of partition coefficient on ionic strength | -0.152 | -0.102 | -0.089 | -0.062 | -0.203 | -0.107 | -0.355 | 0.001 | 0 | -0.181 | -0.181 | -0.203 | -0.411 | -0.170 | -0.190 | 0.275 | 0 | 0 | -0.086 | -0.125 |
Hydrophobicity | 0.83 | 2.52 | 0.83 | 1.60 | 0.09 | 1.40 | 0.64 | 2.75 | 1.48 | 2.70 | 0 | 0.14 | 0.65 | 0.54 | 0.10 | 0.31 | 1.10 | 2.97 | 3.07 | 1.79 |
Bulkiness | 11.50 | 21.40 | 14.28 | 15.71 | 12.82 | 16.25 | 11.68 | 19.80 | 13.46 | 17.43 | 14.45 | 9.47 | 13.57 | 15.77 | 3.40 | 21.67 | 13.69 | 18.03 | 21.40 | 21.57 |
Polarity | 0 | 0.13 | 52 | 49.50 | 3.38 | 1.43 | 49.70 | 0.35 | 1.48 | 1.58 | 3.53 | 1.67 | 49.90 | 1.66 | 0 | 2.10 | 51.60 | 1.61 | 0.13 | 0.13 |
Isoelectric point | 6 | 5.98 | 10.76 | 9.74 | 5.41 | 5.74 | 2.77 | 5.48 | 5.05 | 6.30 | 5.65 | 5.68 | 3.22 | 5.66 | 5.97 | 5.89 | 7.59 | 5.66 | 6.02 | 5.96 |
RF rank | 9.9 | 17.6 | 4.6 | 3.5 | 5.4 | 14.9 | 2.8 | 18.8 | 2.8 | 14.8 | 9.0 | 6.9 | 3.2 | 9.5 | 5.6 | 17.1 | 8.2 | 15.0 | 17.1 | 14.3 |
Normalized positional residue frequency at helix termini N4 | 0.94 | 0.95 | 1.15 | 1.03 | 0.79 | 0.88 | 1.19 | 1.06 | 0.60 | 1.18 | 0.94 | 0.69 | 1.41 | 0.87 | 1.18 | 0.91 | 1.15 | 1.04 | 1.07 | 0.90 |
Normalized positional residue frequency at helix termini N"' | 0.98 | 0.80 | 1.14 | 1.06 | 1.05 | 1.12 | 1.05 | 1.12 | 0.41 | 1.31 | 0.90 | 1.02 | 1.04 | 0.80 | 1.25 | 0.90 | 1.01 | 1.12 | 0.88 | 0.87 |
Normalized positional residue frequency at helix termini N" | 1.05 | 0.96 | 0.81 | 0.97 | 0.91 | 0.99 | 1.39 | 0.95 | 0.60 | 1.05 | 0.87 | 0.96 | 1.11 | 1.03 | 1.26 | 1.06 | 1.43 | 0.94 | 0.95 | 0.62 |
Normalized positional residue frequency at helix termini N | 0.75 | 1.01 | 0.90 | 0.66 | 1.24 | 1.02 | 1.72 | 0.88 | 0.66 | 1.33 | 1.08 | 1.20 | 1.10 | 1.13 | 1.14 | 0.68 | 0.96 | 0.80 | 0.80 | 0.58 |
Normalized positional residue frequency at helix termini Nc | 0.67 | 0.79 | 0.76 | 0.84 | 1.28 | 0.98 | 1.58 | 0.96 | 0.37 | 1.12 | 1.05 | 1.25 | 0.94 | 1.41 | 0.98 | 0.94 | 0.83 | 0.82 | 0.78 | 0.67 |
Normalized positional residue frequency at helix termini N1 | 1.10 | 0.84 | 1.05 | 1.08 | 0.72 | 0.90 | 1.14 | 0.90 | 0.26 | 1.67 | 1.31 | 0.81 | 2.30 | 0.77 | 0.55 | 1.26 | 0.83 | 0.99 | 1.06 | 0.76 |
Normalized positional residue frequency at helix termini N2 | 1.39 | 0.91 | 0.95 | 0.80 | 0.67 | 1.10 | 1.64 | 1 | 0.52 | 0.94 | 1.60 | 0.69 | 2.07 | 0.92 | 0.65 | 1.10 | 1.36 | 0.73 | 0.64 | 0.70 |
Normalized positional residue frequency at helix termini N3 | 1.43 | 1.52 | 1.33 | 0.82 | 0.55 | 1.68 | 0.90 | 1.10 | 0.52 | 0.15 | 1.43 | 0.61 | 1.70 | 0.75 | 0.56 | 1.68 | 0.66 | 0.65 | 1.18 | 1.14 |
Normalized positional residue frequency at helix termini N4 | 1.55 | 1.36 | 1.39 | 1.27 | 0.60 | 2.13 | 0.61 | 1.39 | 0.59 | 0.03 | 1.43 | 0.44 | 1.34 | 0.65 | 0.37 | 1.10 | 0.89 | 0.93 | 1.47 | 1.18 |
Normalized positional residue frequency at helix termini N5 | 1.80 | 1.47 | 1.73 | 1.24 | 0.73 | 1.64 | 0.90 | 0.96 | 0.55 | 0.15 | 0.97 | 0.67 | 1.73 | 0.70 | 0.32 | 0.68 | 0.46 | 0.91 | 1.09 | 0.81 |
Normalized positional residue frequency at helix termini C5 | 1.52 | 1.26 | 1.49 | 1.10 | 0.58 | 1.14 | 1.04 | 1.14 | 0.26 | 0.44 | 1.41 | 0.66 | 1.76 | 0.73 | 0.30 | 0.68 | 0.83 | 1.04 | 1.25 | 1.03 |
Normalized positional residue frequency at helix termini C4 | 1.49 | 1.40 | 1.41 | 1.17 | 0.67 | 1.84 | 0.94 | 0.86 | 0.37 | 0.20 | 1.52 | 0.68 | 1.55 | 0.79 | 0.29 | 1.52 | 0.96 | 1.06 | 1.04 | 0.94 |
Normalized positional residue frequency at helix termini C3 | 1.73 | 1.80 | 1.24 | 1.22 | 0.70 | 2.21 | 0.68 | 1.35 | 0.63 | 0.07 | 0.88 | 0.65 | 1.16 | 0.46 | 0.32 | 1.57 | 0.76 | 1.10 | 1.15 | 0.94 |
Normalized positional residue frequency at helix termini C2 | 1.33 | 1.63 | 1.39 | 1.71 | 0.64 | 1.76 | 0.60 | 1.22 | 0.44 | 0.07 | 1.37 | 0.42 | 1.43 | 0.57 | 0.20 | 1 | 1.02 | 1.02 | 1.58 | 1.08 |
Normalized positional residue frequency at helix termini C1 | 1.87 | 1.65 | 1.66 | 1.63 | 0.70 | 1.35 | 0.91 | 0.67 | 0.33 | 0.03 | 1.24 | 0.71 | 1.88 | 0.50 | 0.33 | 1 | 0.89 | 0.73 | 0.90 | 0.51 |
Normalized positional residue frequency at helix termini Cc | 1.19 | 1.36 | 1.45 | 1.45 | 1.33 | 1.35 | 0.72 | 1.20 | 0.44 | 0.10 | 1.43 | 1.02 | 1.27 | 0.82 | 0.74 | 0.58 | 1.55 | 1.06 | 0.61 | 0.46 |
Normalized positional residue frequency at helix termini C' | 0.77 | 0.66 | 1.11 | 1.19 | 1.39 | 0.74 | 0.79 | 1.04 | 0.44 | 0.66 | 0.95 | 0.64 | 0.92 | 0.82 | 2.74 | 0.58 | 1.65 | 0.93 | 0.64 | 0.53 |
Normalized positional residue frequency at helix termini C" | 0.93 | 1.16 | 0.96 | 1.27 | 0.82 | 1.11 | 1.15 | 1.05 | 0.67 | 1.01 | 1.02 | 0.71 | 1.07 | 0.84 | 1.08 | 1.06 | 1.40 | 1.15 | 1.14 | 0.74 |
Normalized positional residue frequency at helix termini C"' | 1.09 | 0.87 | 1.29 | 1.13 | 1.03 | 0.96 | 1.17 | 0.84 | 0.26 | 2.01 | 1.08 | 0.76 | 1.31 | 0.79 | 0.97 | 0.91 | 0.88 | 0.64 | 0.97 | 0.77 |
Normalized positional residue frequency at helix termini C4' | 0.71 | 0.84 | 1.09 | 1.10 | 0.95 | 0.80 | 1.43 | 0.95 | 0.65 | 1.70 | 0.87 | 0.65 | 1.19 | .086 | 1.07 | 1.25 | 1.13 | 0.85 | 1.05 | 1.12 |
Delta G values for the peptides extrapolated to 0 M urea | 13.4 | 13.0 | 13.3 | 13.0 | 12.0 | 12.8 | 11.7 | 12.1 | 11.6 | 6.5 | 12.8 | 12.2 | 12.2 | 11.7 | 11.3 | 12.4 | 11.6 | 12.1 | 12.0 | 11.9 |
Helix formation parameters | -0.77 | -0.62 | -0.68 | -0.65 | -0.07 | -0.50 | -0.15 | -0.41 | -0.23 | 3 | -0.33 | -0.35 | -0.27 | -0.11 | 0 | -0.45 | -0.06 | -0.17 | -0.23 | -0.14 |
Normalized flexibility parameters | 0.984 | 0.935 | 1.008 | 1.102 | 1.048 | 0.952 | 1.068 | 0.915 | 0.906 | 1.049 | 1.037 | 1.046 | 1.094 | 0.997 | 1.031 | 0.904 | 0.950 | 0.929 | 0.927 | 0.931 |
Normalized flexibility parameters | 1.315 | 1.234 | 1.310 | 1.367 | 1.380 | 1.269 | 1.372 | 1.247 | 1.196 | 1.342 | 1.342 | 1.381 | 1.376 | 1.324 | 1.382 | 1.186 | 1.279 | 1.199 | 1.241 | 1.235 |
Normalized flexibility parameters | 0.994 | 0.982 | 1.026 | 1.029 | 1.022 | 0.963 | 1.022 | 0.934 | 0.939 | 1.050 | 1.041 | 1.025 | 1.052 | 0.998 | 1.018 | 0.938 | 0.967 | 0.981 | 0.977 | 0.968 |
Normalized flexibility parameters | 0.783 | 0.783 | 0.807 | 0.834 | 0.799 | 0.806 | 0.822 | 0.774 | 0.785 | 0.809 | 0.817 | 0.811 | 0.826 | 0.795 | 0.784 | 0.796 | 0.777 | 0.788 | 0.776 | 0.781 |
Free energy in alpha-helical conformation | 0.423 | 0.494 | 0.503 | 0.615 | 0.906 | 0.444 | 0.870 | 0.706 | 0.877 | 1.945 | 0.594 | 0.928 | 0.167 | 0.884 | 1.162 | 0.690 | 0.802 | 0.778 | 0.566 | 0.706 |
Free energy in alpha-helical region | 0.619 | 0.740 | 0.753 | 0.784 | 1.089 | 0.736 | 0.932 | 0.968 | 1.107 | 1.780 | 0.770 | 0.969 | 0.675 | 1.053 | 1.361 | 0.910 | 1.034 | 1.009 | 0.876 | 0.939 |
Free energy in beta-strand conformation | 1.080 | 0.789 | 0.976 | 1.026 | 1.197 | 0.812 | 1.266 | 0.685 | 0.733 | 1.412 | 1.050 | 0.987 | 1.085 | 0.784 | 1.104 | 0.755 | 0.906 | 0.665 | 0.583 | 0.546 |
Free energy in beta-strand region | 0.978 | 0.766 | 0.784 | 0.841 | 0.915 | 0.729 | 1.038 | 0.585 | 0.573 | 2.613 | 0.863 | 0.784 | 0.962 | 0.569 | 1.405 | 0.671 | 0.724 | 0.560 | 0.502 | 0.444 |
Free energy in beta-strand region | 1.40 | 1.33 | 1.23 | 1.34 | 1.61 | 1.12 | 1.89 | 1.07 | 1.14 | 3.90 | 1.33 | 1.20 | 1.42 | 0.99 | 2.06 | 1.10 | 1.25 | 0.98 | 1.02 | 0.87 |
Free energies of transfer of AcWl-X-LL peptides from bilayer interface t | 4.08 | 4.81 | 3.91 | 3.77 | 3.83 | 4.48 | 3.02 | 5.38 | 4.49 | 3.80 | 3.67 | 4.12 | 2.23 | 4.11 | 4.24 | 6.10 | 4.08 | 5.19 | 4.52 | 4.18 |
Thermodynamic beta sheet propensity | -0.35 | -0.48 | -0.44 | -0.41 | -0.38 | -0.46 | -0.41 | -0.55 | -0.47 | -0.23 | -0.40 | -0.39 | -0.41 | -0.48 | 0.0 | -0.48 | -0.46 | -0.50 | -0.56 | -0.53 |
Turn propensity scale for transmembrane helices | 0.5 | 0.4 | 1.7 | 1.6 | 1.7 | 0.5 | 1.6 | 0.4 | 0.6 | 1.7 | 1.6 | 0.7 | 1.6 | 0.4 | 1.3 | 0.7 | 1.6 | 0.6 | 0.6 | 0.5 |
Alpha helix propensity of position 44 in T4 lysozyme | 0.96 | 0.92 | 0.77 | 0.73 | 0.39 | 0.86 | 0.42 | 0.59 | 0.42 | -2.50 | 0.80 | 0.53 | 0.53 | 0.54 | 0 | 0.58 | 0.57 | 0.72 | 0.84 | 0.63 |
p-Values of mesophilic proteins based on the distributions of B value | 0.343 | 0.287 | 0.353 | 0.429 | 0.409 | 0.293 | 0.429 | 0.292 | 0.319 | 0.432 | 0.395 | 0.416 | 0.405 | 0.362 | 0.389 | 0.268 | 0.307 | 0.22 | 0.296 | 0.307 |
p-Values of thermophilic proteins based on the distributions of B value | 0.320 | 0.340 | 0.327 | 0.446 | 0.384 | 0.313 | 0.424 | 0.314 | 0.198 | 0.354 | 0.436 | 0.376 | 0.514 | 0.339 | 0.374 | 0.291 | 0.299 | 0.287 | 0.306 | 0.294 |
Distribution of amino acid residues in the 18 non-redundant families o | 8.9 | 7.4 | 4.6 | 6.1 | 4.4 | 2.3 | 6.3 | 3.3 | 0.6 | 4.2 | 2.8 | 4.0 | 6.9 | 5.7 | 9.4 | 1.3 | 2.2 | 4.5 | 7.0 | 8.2 |
Distribution of amino acid residues in the 18 non-redundant families o | 9.2 | 7.7 | 3.6 | 6.5 | 5.1 | 2.4 | 6.0 | 3.4 | 1.0 | 4.2 | 2.9 | 5.5 | 6.0 | 5.7 | 9.4 | 1.2 | 2.1 | 3.7 | 6.0 | 8.2 |
Distribution of amino acid residues in the alpha-helices in thermophili | 14.1 | 9.1 | 5.5 | 7.7 | 3.2 | 3.3 | 5.7 | 5.0 | 0.1 | 0.7 | 3.7 | 3.9 | 8.8 | 4.4 | 4.1 | 1.2 | 2.0 | 4.5 | 7.1 | 5.9 |
Distribution of amino acid residues in the alpha-helices in mesophili | 13.4 | 10.6 | 3.9 | 7.5 | 3.7 | 3.0 | 4.6 | 4.5 | 0.8 | 1.3 | 4.8 | 3.8 | 7.8 | 4.6 | 4.6 | 1.0 | 3.3 | 3.3 | 6.5 | 7.1 |
Side-chain contribution to protein stability | 9.8 | 17.0 | 7.3 | 10.5 | 3.6 | 11.9 | 4.9 | 23.0 | 3.0 | 15.0 | 2.4 | 2.6 | 4.4 | 6.9 | 0 | 24.2 | 11.9 | 17.2 | 17.2 | 15.3 |
Propensity of amino acids within pi-helices | 0.70 | 1.44 | 0.95 | 0.91 | 1.47 | 0.91 | 0.87 | 1.34 | 1.17 | 0.12 | 0.73 | 0.84 | 0.96 | 0.74 | 0.64 | 1.80 | 1.39 | 1.68 | 1.29 | 1.20 |
Hydropathy scale based on self-information values in the two-state model | 58 | 95 | -184 | -24 | -93 | 78 | -97 | 92 | 116 | -79 | -139 | -34 | -131 | -7 | -11 | 59 | -73 | -11 | 107 | 100 |
Hydropathy scale based on self-information values in the two-state model | 51 | 103 | -144 | -205 | -84 | 73 | -78 | 108 | 137 | -79 | -128 | -26 | -115 | -3 | -13 | 69 | -55 | 11 | 106 | 108 |
Hydropathy scale based on self-information values in the two-state model | 41 | 103 | -109 | -148 | -74 | 77 | -47 | 128 | 169 | -81 | -104 | -31 | -90 | 10 | -18 | 102 | -35 | 36 | 104 | 116 |
Hydropathy scale based on self-information values in the two-state model | 32 | 104 | -95 | -124 | -73 | 82 | -29 | 132 | 182 | -82 | -95 | -34 | -74 | 20 | -22 | 118 | -25 | 44 | 106 | 113 |
Hydropathy scale based on self-information values in the two-state model | 24 | 103 | -79 | -9 | -76 | 90 | 0 | 131 | 194 | -85 | -87 | -36 | -57 | 34 | -28 | 116 | -31 | 43 | 102 | 111 |
Hydropathy scale based on self-information values in the two-state model | 5 | 82 | -57 | -38 | -77 | 83 | 45 | 117 | 224 | -103 | -67 | -41 | -8 | 79 | -47 | 130 | -50 | 27 | 83 | 117 |
Hydropathy scale based on self-information values in the two-state model | -2 | 36 | -41 | 115 | -97 | 62 | 248 | 120 | 329 | -132 | -37 | -52 | 117 | 174 | -66 | 179 | -70 | -7 | 28 | 114 |
Averaged turn propensities in a transmembrane helix | 0.4 | 0.3 | 1.5 | 1.4 | 1.6 | 0.5 | 1.5 | 0.3 | 0.7 | 1.6 | 1.4 | 0.9 | 1.3 | 0.7 | 1.1 | 0.9 | 1.4 | 0.9 | 0.5 | 0.4 |
Alpha-helix propensity derived from designed sequences | -0.04 | -0.38 | -0.30 | -0.18 | 0.25 | -0.09 | 0.27 | -0.01 | 0.57 | 0 | -0.02 | 0.15 | -0.33 | 0.39 | 1.24 | 0.21 | -0.11 | 0.05 | -0.26 | -0.06 |
Beta-sheet propensity derived from designed sequences | -0.12 | 0.15 | 0.34 | 0.29 | 1.05 | -0.71 | 1.12 | -0.67 | -0.63 | 0 | 1.67 | 1.45 | 0.91 | -0.70 | 0.76 | -0.14 | 1.34 | -0.49 | -0.77 | -0.70 |
Composition of amino acids in extracellular proteins | 8.6 | 8.8 | 4.2 | 6.3 | 4.6 | 2.5 | 4.9 | 3.7 | 2.9 | 4.9 | 4.0 | 7.3 | 5.1 | 6.0 | 7.8 | 1.4 | 2.1 | 3.6 | 4.6 | 6.7 |
Composition of amino acids in anchored proteins | 7.6 | 9.4 | 5.0 | 5.8 | 4.4 | 2.1 | 5.2 | 4.0 | 2.2 | 5.4 | 4.1 | 7.2 | 6.2 | 6.1 | 6.9 | 1.4 | 2.1 | 3.2 | 5.1 | 6.7 |
Composition of amino acids in membrane proteins | 8.1 | 11.0 | 4.6 | 4.4 | 3.7 | 2.8 | 3.8 | 5.6 | 2.0 | 4.7 | 3.1 | 7.3 | 4.6 | 5.6 | 7.0 | 1.8 | 2.0 | 3.3 | 6.7 | 7.7 |
Composition of amino acids in intracellular proteins | 7.9 | 8.6 | 4.9 | 6.7 | 4.0 | 2.4 | 5.5 | 3.9 | 1.9 | 5.3 | 4.4 | 6.6 | 7.1 | 5.3 | 7.1 | 1.2 | 2.1 | 3.1 | 5.2 | 6.8 |
Composition of amino acids in nuclear proteins | 8.3 | 7.4 | 8.7 | 7.9 | 3.7 | 2.3 | 4.7 | 2.7 | 1.6 | 6.9 | 4.7 | 8.8 | 6.5 | 5.1 | 6.3 | 0.7 | 2.1 | 2.4 | 3.7 | 5.3 |
Surface composition of amino acids in intracellular proteins of thermophile | 4.47 | 5.06 | 8.48 | 12.98 | 3.89 | 1.71 | 7.05 | 2.32 | 0.29 | 5.41 | 2.87 | 4.27 | 16.56 | 3.83 | 8.29 | 0.67 | 1.74 | 2.75 | 3.30 | 4.05 |
Surface composition of amino acids in intracellular proteins of mesophile | 6.77 | 4.43 | 6.87 | 10.20 | 5.50 | 1.87 | 8.57 | 1.92 | 0.31 | 4.79 | 5.24 | 5.41 | 12.93 | 5.36 | 7.95 | 0.54 | 2.80 | 2.26 | 2.72 | 3.57 |
Surface composition of amino acids in extracellular proteins of mesophile | 7.43 | 2.74 | 4.51 | 9.67 | 9.12 | 0.60 | 8.71 | 1.18 | 0.42 | 5.60 | 5.42 | 9.60 | 5.86 | 8.95 | 9.40 | 1.18 | 1.49 | 3.26 | 1.76 | 3.10 |
Surface composition of amino acids in nuclear proteins | 5.22 | 4.52 | 7.30 | 12.68 | 6.06 | 1.85 | 7.91 | 1.68 | 1.01 | 5.70 | 6 | 6.99 | 10.66 | 5.16 | 5.81 | 0.56 | 2.27 | 2.16 | 2.36 | 4.10 |
Interior composition of amino acids in intracellular proteins of thermophile | 9.88 | 13.21 | 3.71 | 3.39 | 2.35 | 2.44 | 3.50 | 5.27 | 1.12 | 3.80 | 1.66 | 4.10 | 4.02 | 4.98 | 6.88 | 1.11 | 1.88 | 4.07 | 10.08 | 12.53 |
Interior composition of amino acids in intracellular proteins of mesophile | 10.98 | 12.79 | 3.26 | 2.54 | 2.85 | 3.10 | 3.37 | 4.97 | 1.47 | 3.42 | 2.30 | 4.93 | 3.51 | 5.55 | 7.48 | 1.28 | 2.20 | 3.55 | 9.74 | 10.69 |
Interior composition of amino acids in extracellular proteins of mesophile | 9.95 | 9.66 | 3.05 | 2 | 4.84 | 2.45 | 4.46 | 5.41 | 1.30 | 3.20 | 2.64 | 6.03 | 2.58 | 5.62 | 8.87 | 2.60 | 1.99 | 6.15 | 7.73 | 9.46 |
Interior composition of amino acids in nuclear proteins | 8.26 | 16.46 | 2.80 | 1.89 | 2.54 | 2.67 | 2.80 | 7.32 | 2.67 | 3.30 | 2.86 | 6 | 2.67 | 5 | 5.62 | 2.01 | 1.98 | 3.96 | 8.95 | 10.24 |
Entire chain composition of amino acids in intracellular proteins o | 7.39 | 9.45 | 5.91 | 7.81 | 3.06 | 2.10 | 5.14 | 3.91 | 0.74 | 4.54 | 2.22 | 4.18 | 9.80 | 4.45 | 7.53 | 0.90 | 1.82 | 3.46 | 6.96 | 8.62 |
Entire chain composition of amino acids in intracellular proteins o | 9.07 | 9 | 4.90 | 6.01 | 4.05 | 2.54 | 5.73 | 3.59 | 0.95 | 4.04 | 3.63 | 5.15 | 7.77 | 5.46 | 7.69 | 0.95 | 2.47 | 2.96 | 6.56 | 7.47 |
Entire chain composition of amino acids in extracellular proteins o | 8.82 | 6.54 | 3.71 | 5.45 | 6.77 | 1.62 | 6.38 | 3.51 | 0.90 | 4.28 | 3.89 | 7.64 | 4.05 | 7.12 | 9.11 | 1.96 | 1.77 | 4.85 | 5.05 | 6.60 |
Entire chain compositino of amino acids in nuclear proteins | 6.65 | 10.15 | 5.17 | 7.59 | 4.40 | 2.24 | 5.50 | 4.34 | 1.79 | 4.56 | 4.52 | 6.52 | 6.89 | 5.08 | 5.72 | 1.24 | 2.13 | 3.01 | 5.47 | 7 |
Screening coefficients gamma, local | 0.163 | 0.315 | 0.220 | 0.255 | 0.124 | 0.356 | 0.212 | 0.410 | 0.316 | 0 | 0.274 | 0.290 | 0.212 | 0.412 | 0.080 | 0.325 | 0.315 | 0.354 | 0.474 | 0.515 |
Screening coefficients gamma, non-local | 0.236 | 0.293 | 0.233 | 0.231 | 0.189 | 0.367 | 0.168 | 0.328 | 0.259 | 0 | 0.314 | 0.202 | 0.306 | 0.308 | -0.170 | 0.197 | 0.256 | 0.223 | 0.391 | 0.436 |
Slopes tripeptide, FDPB VFF neutral | -0.490 | -0.450 | -0.429 | -0.409 | -0.387 | -0.375 | -0.375 | -0.309 | -0.352 | 0 | -0.422 | -0.426 | -0.382 | -0.240 | -0.647 | -0.325 | -0.357 | -0.288 | -0.268 | -0.220 |
Slopes tripeptides, LD VFF neutral | -0.871 | -0.798 | -0.727 | -0.715 | -0.741 | -0.717 | -0.737 | -0.649 | -0.666 | 0 | -0.728 | -0.679 | -0.773 | -0.629 | -0.822 | -0.669 | -0.685 | -0.655 | -0.617 | -0.599 |
Slopes tripeptide, FDPB VFF noside | -0.393 | -0.281 | -0.317 | -0.294 | -0.268 | -0.274 | -0.247 | -0.189 | -0.222 | 0 | -0.291 | -0.280 | -0.260 | -0.152 | -0.570 | -0.206 | -0.244 | -0.155 | -0.144 | -0.080 |
Slopes tripeptide FDPB VFF all | -0.378 | -0.266 | -0.369 | -0.335 | -0.245 | -0.260 | -0.113 | -0.187 | -0.206 | 0 | -0.290 | -0.251 | -0.165 | -0.093 | -0.560 | -0.188 | -0.295 | -0.147 | -0.134 | -0.084 |
Slopes tripeptide FDPB PARSE neutral | -0.729 | -0.462 | -0.535 | -0.508 | -0.597 | -0.518 | -0.545 | -0.454 | -0.408 | 0 | -0.492 | -0.278 | -0.532 | -0.367 | -0.860 | -0.455 | -0.519 | -0.439 | -0.361 | -0.323 |
Slopes dekapeptide, FDPB VFF neutral | -0.623 | -0.527 | -0.567 | -0.581 | -0.619 | -0.571 | -0.626 | -0.461 | -0.571 | 0 | -0.559 | -0.458 | -0.572 | -0.233 | -0.679 | -0.327 | -0.508 | -0.451 | -0.199 | -0.263 |
Slopes proteins, FDPB VFF neutral | -0.376 | -0.317 | -0.280 | -0.412 | -0.403 | -0.312 | -0.405 | -0.237 | -0.441 | 0 | -0.362 | -0.374 | -0.362 | -0.243 | -0.392 | -0.111 | -0.345 | -0.171 | -0.194 | -0.355 |
Side-chain conformation by gaussian evolutionary method | 0 | 0.89 | 0.62 | 0.77 | 0.76 | 0.77 | 0.66 | 0.92 | 0.83 | 0.94 | 0.59 | 0.58 | 0.73 | 0.73 | 0 | 0.86 | 0.92 | 0.93 | 0.88 | 0.88 |
Amphiphilicity index | 0 | 0 | 2.45 | 3.67 | 0 | 0 | 0 | 0 | 0 | 0 | 1.25 | 0 | 1.27 | 0 | 0 | 6.93 | 1.45 | 5.06 | 0 | 0 |
Volumes including the crystallographic waters using the ProtOr | 89.3 | 163.1 | 190.3 | 165.1 | 122.4 | 165.8 | 114.4 | 190.8 | 102.5 | 121.6 | 146.9 | 94.2 | 138.8 | 119.6 | 63.8 | 226.4 | 157.5 | 194.6 | 163.0 | 138.2 |
Volumes not including the crystallographic waters using the ProtOr | 90.0 | 164.0 | 194.0 | 167.3 | 124.7 | 167.0 | 117.3 | 191.9 | 103.3 | 122.9 | 149.4 | 95.4 | 142.2 | 121.5 | 64.9 | 228.2 | 160.0 | 197.0 | 163.9 | 139.0 |
Electron-ion interaction potential values | 0.0373 | 0.0000 | 0.0959 | 0.0371 | 0.0036 | 0.0823 | 0.1263 | 0.0946 | 0.0829 | 0.0198 | 0.0761 | 0.0829 | 0.0058 | 0.0941 | 0.0050 | 0.0548 | 0.0242 | 0.0516 | 0.0000 | 0.0057 |
Hydrophobicity scales | 0.85 | 1.99 | 0.20 | -1.19 | -0.48 | 1.42 | -1.10 | 1.69 | 2.10 | -1.14 | -0.42 | -0.52 | -0.79 | -0.08 | 0 | 1.76 | 0.22 | 1.37 | 3.14 | 2.53 |
Hydrophobicity coefficient in RP-HPLC, C18 with 0.1%TFA/MeCN/H2O | 0.06 | 3.50 | -0.85 | -1.62 | 0.25 | 0.21 | -0.20 | 4.80 | 0.49 | 0.71 | 0.31 | -0.62 | -0.10 | 0.65 | 0.21 | 2.29 | -2.24 | 1.89 | 3.48 | 1.59 |
Hydrophobicity coefficient in RP-HPLC, C8 with 0.1%TFA/MeCN/H2O | 2.62 | 6.57 | 1.26 | -2.78 | -1.27 | -3.12 | -2.84 | 9.14 | 0.73 | -0.12 | -1.69 | -1.39 | -0.45 | 1.81 | -1.15 | 5.91 | -0.74 | 1.39 | 4.38 | 2.30 |
Hydrophobicity coefficient in RP-HPLC, C4 with 0.1%TFA/MeCN/H2O | -1.64 | 0.83 | -3.28 | -2.36 | 0.83 | 4.26 | 0.70 | -1.36 | 9.30 | 3.12 | -0.04 | 1.59 | 1.18 | 2.31 | -1.85 | 2.61 | 7.17 | 2.37 | 3.02 | 0.52 |
Hydrophobicity coefficient in RP-HPLC, C18 with 0.1%TFA/2-PrOH/MeCN/H2 | -2.34 | 1.09 | 1.60 | 1.56 | 2.81 | 0.62 | -0.48 | 2.57 | 5.03 | -0.15 | 0.16 | 1.93 | 1.30 | 0.19 | -1.06 | 3.59 | -3 | -2.58 | 7.26 | 2.06 |
Hydrophilicity scale | 0.78 | 0.56 | 1.58 | 1.10 | 1.20 | 0.66 | 1.35 | 0.47 | 0.55 | 0.69 | 1.19 | 1 | 1.45 | 1.05 | 0.68 | 0.70 | 0.99 | 1 | 0.47 | 0.51 |
Retention coefficient at pH 2 | 25 | 100 | -7 | -26 | -7 | 68 | 2 | 100 | 32 | 25 | 0 | -2 | 14 | 7 | -2 | 109 | -26 | 56 | 91 | 62 |
Modified Kyte-Doolittle hydrophobicity scale | 1.10 | 3.80 | -5.10 | -4.11 | -3.50 | 1.90 | -3.60 | 2.80 | 2.50 | -1.90 | -3.68 | -0.50 | -3.20 | -0.70 | -0.64 | -0.46 | -3.20 | -1.3 | 4.50 | 4.2 |
Interactivity scale obtained from the contact matrix | 0.1366 | 0.4251 | 0.0363 | -0.0101 | -0.0345 | 0.1747 | -0.1233 | 0.4076 | 0.2745 | 0.0019 | 0.0325 | -0.0433 | -0.0484 | 0.0589 | -0.0464 | 0.2362 | 0.0549 | 0.3167 | 0.4172 | 0.4084 |
Interactivity scale obtained by maximizing the mean of correlatio | 0.0728 | 0.3819 | 0.0394 | -0.0053 | -0.0390 | 0.1613 | -0.0552 | 0.4201 | 0.3557 | -0.0492 | 0.0126 | -0.0282 | -0.0295 | 0.0239 | -0.0589 | 0.4114 | 0.0874 | 0.3113 | 0.3805 | 0.2947 |
Interactivity scale obtained by maximizing the mean of correlatio | 0.1510 | 0.3926 | -0.0103 | -0.0158 | 0.0381 | 0.2160 | 0.0047 | 0.3455 | 0.3222 | 0.0844 | 0.0246 | 0.0040 | -0.0639 | 0.1462 | 0.0248 | 0.2657 | 0.1335 | 0.2998 | 0.4238 | 0.3997 |
Linker propensity index | -0.058 | 0.138 | 0.000 | -0.112 | 0.027 | 0.275 | 0.016 | 0.240 | 0.447 | -0.478 | -0.073 | -0.177 | -0.128 | -0.163 | 0.331 | 0.564 | 0.195 | 0.322 | 0.060 | -0.052 |
Knowledge-based membrane-propensity scale from 1D_Helix in MPtopo database | -0.17 | -0.28 | 0.37 | 0.32 | 0.18 | -0.26 | 0.37 | -0.41 | -0.06 | 0.13 | 0.26 | 0.05 | 0.15 | 0.02 | 0.01 | -0.15 | -0.02 | -0.09 | -0.28 | -0.17 |
Knowledge-based membrane-propensity scale from 3D_Helix in MPtopo database | -0.15 | -0.36 | 0.32 | 0.24 | 0.22 | -0.19 | 0.41 | -0.22 | -0.15 | 0.15 | 0.03 | 0.16 | 0.30 | -0.08 | 0.08 | -0.28 | 0.06 | -0.03 | -0.29 | -0.24 |
Linker propensity from all dataset | 0.964 | 1.085 | 1.143 | 0.944 | 0.944 | 1.032 | 0.916 | 1.119 | 0.778 | 1.299 | 1.047 | 0.947 | 1.051 | 1.017 | 0.835 | 0.895 | 1.014 | 1 | 0.922 | 0.955 |
Linker propensity from 1-linker dataset | 0.974 | 1.11 | 1.129 | 0.946 | 0.988 | 0.923 | 0.892 | 1.122 | 0.972 | 1.362 | 1.092 | 0.932 | 1.054 | 1.023 | 0.845 | 0.879 | 0.949 | 0.902 | 0.928 | 0.923 |
Linker propensity from 2-linker dataset | 0.938 | 1 | 1.137 | 0.952 | 0.902 | 1.077 | 0.857 | 1.11 | 0.6856 | 1.266 | 0.916 | 0.956 | 1.139 | 1.018 | 0.892 | 0.971 | 1.109 | 1.157 | 0.986 | 0.959 |
Linker propensity from 3-linker dataset | 1.042 | 1.193 | 1.069 | 0.979 | 0.828 | 0.998 | 0.97 | 0.981 | 0.5 | 1.332 | 1.111 | 0.984 | 0.992 | 0.992 | 0.743 | 0.96 | 1.034 | 1.12 | 0.852 | 1.001 |
Linker propensity from small dataset | 1.065 | 1.192 | 1.131 | 0.478 | 0.762 | 1.369 | 0.836 | 1.368 | 1.015 | 1.241 | 0.861 | 1.097 | 0.736 | 0.822 | 1.022 | 1.017 | 0.973 | 0.836 | 1.189 | 1.14 |
Linker propensity from medium dataset | 0.99 | 1.106 | 1.132 | 1.003 | 0.873 | 1.093 | 0.915 | 1.121 | 0.644 | 1.314 | 0.999 | 0.911 | 1.053 | 0.988 | 0.785 | 0.939 | 1.054 | 1.09 | 0.95 | 0.957 |
Linker propensity from long dataset | 0.892 | 0.994 | 1.154 | 0.944 | 1.144 | 0.782 | 0.925 | 1.058 | 1.035 | 1.309 | 1.2 | 0.986 | 1.115 | 1.11 | 0.917 | 0.841 | 0.992 | 0.866 | 0.817 | 0.9 |
Linker propensity from helical | 1.092 | 1.276 | 1.239 | 1.008 | 0.927 | 1.171 | 0.919 | 1.09 | 0.662 | 0.8 | 1.124 | 0.886 | 1.199 | 0.832 | 0.698 | 0.981 | 1.012 | 1.075 | 0.912 | 0.908 |
Linker propensity from non-helical | 0.843 | 0.885 | 1.038 | 0.893 | 0.956 | 0.878 | 0.906 | 1.151 | 0.896 | 1.816 | 0.968 | 1.003 | 0.9 | 1.189 | 0.978 | 0.852 | 1.05 | 0.945 | 0.946 | 0.999 |
The stability scale from the knowledge-based atom-atom potential | 2.18 | 4.71 | 2.71 | 2.12 | 1.85 | 3.63 | 1.75 | 5.88 | 3.89 | 2.09 | 2.16 | 1.66 | 1.89 | 2.18 | 1.17 | 6.46 | 2.51 | 5.01 | 4.50 | 3.77 |
The relative stability scale extracted from mutation experiments | 1.79 | 4.72 | 3.20 | 2.50 | 2.83 | 3.91 | 2.33 | 4.84 | 2.22 | 2.45 | 2.37 | 1.82 | 2.52 | 2.45 | 0.70 | 5.64 | 3.06 | 4.46 | 4.59 | 3.67 |
Buriability | 13.4 | 20.8 | 8.5 | 6.1 | 7.6 | 15.7 | 8.2 | 23.9 | 22.6 | 9.9 | 8.5 | 8.2 | 7.3 | 10.3 | 7.0 | 24.5 | 11.3 | 19.5 | 20.3 | 19.5 |
Linker index | 0.0166 | 0.2523 | -0.0762 | -0.2134 | -0.0786 | 0.0197 | -0.1278 | 0.3561 | 0.5724 | -0.4188 | -0.1051 | -0.1629 | -0.1794 | -0.0701 | -0.0442 | 0.3836 | 0.1643 | 0.2500 | 0.2758 | 0.1782 |
Mean volumes of residues buried in protein interiors | 90.1 | 164.6 | 192.8 | 170.0 | 127.5 | 167.7 | 117.1 | 193.5 | 113.2 | 123.1 | 149.4 | 94.2 | 140.8 | 120.0 | 63.8 | 197.1 | 159.3 | 231.7 | 164.9 | 139.1 |
Average volumes of residues | 91.5 | 163.4 | 196.1 | 162.5 | 138.3 | 165.9 | 135.2 | 198.8 | 114.4 | 123.4 | 156.4 | 102.0 | 154.6 | 126.0 | 67.5 | 209.8 | 163.2 | 237.2 | 162.6 | 138.4 |
Hydrostatic pressure asymmetry index, PAI | 1.076 | 1.054 | 1.361 | 1.105 | 1.056 | 0.974 | 1.290 | 0.869 | 0.753 | 0.820 | 0.729 | 1.342 | 1.118 | 0.871 | 1.346 | 0.666 | 0.985 | 0.531 | 0.926 | 1.131 |
Hydrophobicity index | 1.12 | 1.18 | -2.55 | -0.80 | -0.83 | 0.55 | -0.83 | 0.67 | 0.59 | 0.54 | -0.78 | -0.05 | -0.92 | -0.02 | 1.20 | -0.19 | -0.93 | -0.23 | 1.16 | 1.13 |
Average internal preferences | 1.38 | 1.47 | 0 | 0.15 | 0.37 | 1.78 | 0.52 | 1.72 | 1.43 | 0.85 | 0.22 | 0.86 | 0.71 | 0.89 | 1.34 | 0.82 | 0.66 | 0.47 | 2.32 | 1.99 |
Hydrophobicity-related index | -0.27 | -1.10 | 1.87 | 1.70 | 0.81 | -0.73 | 0.81 | -1.43 | -1.05 | -0.75 | 1.10 | 0.42 | 1.17 | 0.63 | -0.16 | -1.57 | 0.28 | -0.56 | -0.77 | -0.40 |
Apparent partition energies calculated from Wertz-Scheraga index | 0.05 | -0.62 | 0.12 | 0.57 | 0.29 | -0.38 | 0.41 | -0.45 | -0.84 | 0.46 | 0.46 | 0.12 | 0.38 | 0.38 | 0.31 | -0.98 | -0.41 | -0.25 | -0.69 | -0.46 |
Apparent partition energies calculated from Robson-Osguthorpe index | 0.54 | -1.08 | -0.16 | 0.48 | 0.38 | -0.97 | 0.65 | -1.51 | -1.13 | -0.22 | 0.05 | 0.65 | 0.38 | 0.27 | 0 | -1.61 | -0.59 | -1.13 | -2.15 | -0.75 |
Apparent partition energies calculated from Janin index | -0.31 | -0.53 | 1.30 | 1.79 | 0.49 | -0.38 | 0.58 | -0.45 | -0.87 | 0.34 | 0.70 | 0.10 | 0.68 | 0.21 | -0.33 | -0.27 | 0.13 | 0.40 | -0.66 | -0.62 |
Apparent partition energies calculated from Chothia index | -0.27 | -0.44 | 2 | 1.17 | 0.61 | -0.31 | 0.50 | -0.55 | -0.23 | 0.36 | 1 | 0.17 | 0.33 | 0.18 | -0.22 | 0.05 | 0.37 | 0.48 | -0.80 | -0.65 |
Hydropathies of amino acid side chains, neutral form | 0.39 | 1.82 | 0 | 0.32 | -1.91 | 0.96 | -0.71 | 2.27 | 0.25 | 0 | -1.30 | -1.24 | -0.18 | -1 | 0 | 2.13 | -0.60 | 1.47 | 1.82 | 1.30 |
Hydropathies of amino acid side chains, pi-values in pH 7.0 | 0.39 | 1.82 | -3.95 | -2.77 | -1.91 | 0.96 | -3.81 | 2.27 | 0.25 | 0 | -1.30 | -1.24 | -2.91 | -1 | 0 | 2.13 | -0.64 | 1.47 | 1.82 | 1.30 |
Weights from the IFH scale | 0.18 | 0.41 | -5.40 | -2.53 | -1.30 | 0.44 | -2.36 | 0.50 | 0.27 | -0.20 | -1.22 | -0.40 | -2.10 | -0.34 | 0.09 | -0.01 | -1.48 | -0.08 | 0.37 | 0.32 |
Hydrophobicity index, 3.0 pH | 0.42 | 1.80 | -1.56 | -2.03 | -1.03 | 1.18 | -0.51 | 1.74 | 0.84 | 0.86 | -0.96 | -0.64 | -0.37 | -0.26 | 0 | 1.46 | -2.28 | 0.51 | 1.81 | 1.34 |
Scaled side chain hydrophobicity values | 0.616 | 0.943 | 0.000 | 0.283 | 0.236 | 0.738 | 0.028 | 1.000 | 0.680 | 0.711 | 0.251 | 0.359 | 0.043 | 0.450 | 0.501 | 0.878 | 0.165 | 0.880 | 0.943 | 0.825 |
Hydrophobicity scale from native protein structures | 0.2 | 0.5 | -0.7 | -1.6 | -0.5 | 0.5 | -1.4 | 1.0 | 1.9 | -1.0 | -1.1 | -0.7 | -1.3 | -0.4 | -0.1 | 1.6 | 0.4 | 0.5 | 1.4 | 0.7 |
NNEIG index | 50.76 | 53.89 | 48.66 | 42.92 | 45.80 | 52.75 | 43.17 | 53.45 | 58.74 | 45.39 | 46.09 | 47.24 | 43.48 | 49.26 | 50.27 | 53.59 | 49.33 | 51.79 | 57.30 | 56.12 |
SWEIG index | -0.414 | 1.215 | -0.584 | -0.670 | -0.916 | 1.020 | -1.310 | 1.938 | 0.162 | -0.503 | -0.905 | -0.563 | -1.218 | -0.289 | -0.684 | 0.514 | -0.630 | 1.699 | 1.237 | 0.899 |
PRIFT index | -0.96 | 6.81 | 0.75 | -5.62 | -1.94 | 4.76 | -5.68 | 5.06 | 4.54 | -4.47 | -5.30 | -1.92 | -3.86 | -3.99 | -1.28 | 0.21 | -0.62 | 3.34 | 5.54 | 5.39 |
PRILS index | -0.26 | 1.52 | 0.08 | -1.01 | -0.46 | 1.09 | -1.30 | 1.09 | 0.83 | -0.62 | -0.83 | -0.55 | -0.73 | -0.71 | -0.40 | -0.13 | -0.18 | 0.69 | 1.10 | 1.15 |
ALTFT index | -0.73 | 4.91 | -1.03 | -5.99 | -5.29 | 3.34 | -6.13 | 5.20 | 0.64 | -4.32 | -0.96 | -3 | -2.90 | -1.91 | -2.67 | 0.51 | 3.03 | 2.87 | 5.04 | 3.98 |
ALTLS index | -1.35 | 9.88 | -3.89 | -11.92 | -10.96 | 7.47 | -11.88 | 11.35 | 4.37 | -10.86 | -1.34 | -6.21 | -4.56 | -4.83 | -5.82 | 1.80 | 6.54 | 7.61 | 10.93 | 8.20 |
TOTFT index | -0.56 | 4.09 | -0.26 | -4.08 | -2.87 | 3.11 | -4.31 | 3.67 | 1.78 | -3.22 | -2.31 | -1.85 | -2.35 | -1.97 | -1.35 | -0.11 | 0.81 | 2.17 | 3.83 | 3.31 |
TOTLS index | 1.37 | -8.68 | 1.33 | 7.70 | 6.29 | -7.13 | 8.93 | -7.96 | -4.47 | 6.25 | 3.88 | 4.08 | 4.04 | 4.02 | 3.39 | 0.79 | -1.65 | -4.73 | -7.92 | -6.94 |
Relative partition energies derived by the Bethe approximatio | -0.02 | -2.29 | 0.44 | 1.01 | 0.63 | -1.36 | 0.72 | -2.22 | -0.96 | 0.47 | 0.56 | 0.55 | 0.74 | 0.25 | 0.38 | -1.28 | 0 | -0.88 | -1.89 | -1.34 |
Optimized relative partition energies - method A | 0 | -0.37 | 0.07 | 0.17 | 0.10 | -0.22 | 0.12 | -0.36 | -0.16 | 0.08 | 0.09 | 0.09 | 0.12 | 0.04 | 0.06 | -0.21 | 0 | -0.14 | -0.31 | -0.22 |
Optimized relative partition energies - method B | -0.03 | -0.38 | 0.09 | 0.32 | 0.13 | -0.30 | 0.17 | -0.34 | -0.36 | 0.20 | 0.13 | 0.10 | 0.23 | 0.01 | 0.09 | -0.24 | -0.04 | -0.23 | -0.33 | -0.29 |
Optimized relative partition energies - method C | -0.04 | -0.37 | 0.07 | 0.33 | 0.13 | -0.30 | 0.19 | -0.38 | -0.38 | 0.19 | 0.14 | 0.12 | 0.23 | 0.03 | 0.09 | -0.33 | -0.04 | -0.29 | -0.34 | -0.29 |
Optimized relative partition energies - method D | -0.02 | -0.32 | 0.08 | 0.30 | 0.10 | -0.25 | 0.19 | -0.33 | -0.32 | 0.11 | 0.15 | 0.11 | 0.21 | 0.05 | -0.02 | -0.27 | -0.02 | -0.23 | -0.28 | -0.23 |
Hydrophobicity index | -1.6 | -2.8 | 12.3 | 8.8 | 4.8 | -3.4 | 9.2 | -3.7 | -2.0 | 0.2 | 4.1 | -0.6 | 8.2 | -1.2 | -1.0 | -1.9 | 3.0 | 0.7 | -3.1 | -2.6 |
Hydrophobicity index | -0.21 | -4.68 | 2.11 | 3.88 | 0.96 | -3.66 | 1.36 | -4.65 | -6.04 | 0.75 | 1.52 | 1.74 | 2.30 | 0.78 | 0 | -3.32 | -1.23 | -1.01 | -4.81 | -3.50 |
Number of vertices | 2 | 5 | 8 | 6 | 5 | 5 | 5 | 8 | 3 | 4 | 6 | 3 | 6 | 4 | 1 | 11 | 7 | 9 | 5 | 4 |
Number of edges | 1 | 4 | 7 | 5 | 4 | 4 | 4 | 8 | 2 | 4 | 5 | 2 | 5 | 3 | 0 | 12 | 6 | 9 | 4 | 3 |
Total weighted degree of the graph | 2 | 8 | 12 | 10 | 8 | 8 | 8 | 14 | 4 | 8 | 10 | 4 | 10 | 6 | 0 | 24 | 14 | 18 | 8 | 6 |
Weighted domination number | 1 | 4 | 6 | 4 | 4 | 4 | 4 | 6 | 2 | 4 | 4 | 2 | 5 | 3 | 1 | 8 | 6.000 | 7 | 4 | 3 |
Average eccentricity | 1 | 5 | 8.120 | 7 | 5 | 5.40 | 5.17 | 7 | 2.33 | 4 | 5.860 | 1.670 | 6 | 3.250 | 0 | 11.10 | 6.71 | 8.88 | 3.25 | 3.25 |
Radius | 1 | 3 | 6 | 5 | 3 | 3 | 3 | 6.000 | 1 | 4 | 4 | 2 | 4 | 1 | 0 | 9.000 | 6.000 | 6.000 | 3 | 1 |
Diameter | 1 | 6 | 12 | 9 | 6 | 7 | 6 | 11.000 | 3 | 4.000 | 8 | 3 | 8 | 4 | 0 | 14.000 | 9 | 13.000 | 6 | 4 |
Average weighted degree | 1 | 1.60 | 1.50 | 1.667 | 1.60 | 1.60 | 1.60 | 1.750 | 1.333 | 2 | 1.667 | 1.333 | 1.667 | 1.50 | 0 | 2.182 | 2 | 2.000 | 1.600 | 1.50 |
Maximum eigenvalue of the weighted Laplacian matrix of the grap | 2 | 11.029 | 12.499 | 10.363 | 11.539 | 9.49 | 11.539 | 14.851 | 6.243 | 12 | 12.207 | 5 | 11.530 | 9.928 | 0 | 13.511 | 12.876 | 12.868 | 10.851 | 9.928 |
Minimum eigenvalue of the weighted Laplacian matrix of the grap | 0 | -4.729 | -4.307 | -3.151 | -4.178 | -2.812 | -4.178 | -4.801 | -2.243 | -4 | -4.255 | 1 | -3.425 | -3.928 | 0 | -6.324 | -3.721 | -4.793 | -6.085 | -3.928 |
Average eigenvalue of the Laplacian matrix of the the grap | 1 | 3.20 | 3.500 | 3 | 3.20 | 2.80 | 3.20 | 4.25 | 2 | 4 | 3.333 | 2 | 3.333 | 3 | 0 | 4 | 4.286 | 4.333 | 1.80 | 3 |
Second smallest eigenvalue of the Laplacian matrix of the grap | 2 | 1.052 | -2.590 | -0.536 | 0.528 | 0.678 | 0.528 | -1.672 | 2 | 4 | -1.043 | 2 | -0.538 | 3 | 0 | -2.576 | -1.185 | -2.054 | -1.517 | 3 |
Weighted domination number using the atomic number | 6 | 12 | 19 | 12 | 12 | 18 | 12 | 18 | 6 | 12 | 12 | 6 | 12 | 6 | 1 | 24 | 15 | 18 | 12 | 6 |
Average weighted eccentricity based on the the atomic numbe | 6 | 15.60 | 31.444 | 24.50 | 16.50 | 27.20 | 16.40 | 23.25 | 16.670 | 12 | 21.167 | 13.33 | 21 | 12.40 | 3.50 | 27.50 | 23.10 | 27.78 | 15.60 | 10.50 |
Weighted radius based on the atomic number | 6 | 12 | 20 | 18 | 14 | 18 | 12 | 18 | 12 | 12 | 15 | 8 | 14 | 8 | 1 | 18 | 18 | 20 | 12 | 6 |
Weighted diameter based on the atomic number | 6 | 18 | 38 | 31 | 20 | 34 | 20 | 24 | 22 | 12 | 24 | 20 | 26 | 14 | 6 | 36 | 31 | 38 | 18 | 12 |
Total weighted atomic number of the graph | 12 | 30 | 45 | 37 | 33.007 | 40 | 34 | 48 | 28 | 24 | 39 | 22 | 40 | 27 | 7 | 68 | 47 | 56 | 30 | 24.007 |
Average weighted atomic number or degree based on atomic number in the grap | 6 | 6 | 5 | 6.17 | 6.60 | 8 | 6.80 | 6 | 9.33 | 6 | 6.50 | 7.33 | 6.67 | 5.40 | 3.50 | 5.667 | 4.70 | 6.22 | 6 | 6 |
Weighted maximum eigenvalue based on the atomic number | 12 | 25.021 | 23.343 | 22.739 | 27.708 | 31.344 | 28.634 | 26.993 | 28 | 24 | 27.831 | 20 | 28.731 | 23.819 | 7 | 29.778 | 24.243 | 28.252 | 24.841 | 24 |
Weighted minimum eigenvalue based on the atomic number | 0 | 0 | 0 | -0.179 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | -4.227 | 0 | 0.211 | -1.734 | -0.96 | -1.641 | 0 |
Weighted average eigenvalue based on the atomic number | 6 | 9.60 | 10.667 | 10.167 | 10 | 13.60 | 10.40 | 12 | 11.333 | 12 | 10.50 | 8.667 | 10.667 | 9 | 3.50 | 12.75 | 10.400 | 12.222 | 9.60 | 9 |
Weighted second smallest eigenvalue of the weighted Laplacian matri | 0 | 3.113 | 4.20 | 1.372 | 3 | 2.656 | 2.969 | 2.026 | 6 | 12 | 1.849 | 6 | 1.822 | 6 | 0 | 2.044 | 1.605 | 1.599 | 3.373 | 6 |