Vitis vinifera      Regulator


※ Regulator introduction

    The LLPS of scaffold proteins and the stability of MLOs can be modulated by PTMs and other proteins (1-4). For example, arginine methylation of FUS by PRMT1 or PRMT8 reduces the LLPS of FUS, and both PRMTs were classified as PTM regulators. Also, Buchan et al. conducted a microscopy-based genetic screen of >4000 gene deletions in Saccharomyces cerevisiae, and identified 125 genes to be involved in regulating the stability and formation of P-bodies and/or stress granules (5). None of these proteins have been characterized to undergo LLPS, and here we classified all the 125 proteins as MLO regulators.

References
1. Vernon, R.M. and Forman-Kay, J.D. (2019) First-generation predictors of biological protein phase separation. Current opinion in structural biology 58, 88-96. PMID: 31252218
2. Wang, Z. and Zhang, H. (2019) Phase Separation, Transition, and Autophagic Degradation of Proteins in Development and Pathogenesis. Trends in cell biology, 29, 417-427. PMID: 30826216
3. Alberti, S., Gladfelter, A. and Mittag, T. (2019) Considerations and challenges in studying liquid-liquid phase separation and biomolecular condensates. Cell, 176, 419-434. PMID: 30682370
4. Bergeron-Sandoval, L.P., Safaee, N. and Michnick, S.W. (2016) Mechanisms and Consequences of Macromolecular Phase Separation. Cell, 165, 1067-1079. PMID: 27203111
5. Buchan, J.R., Kolaitis, R.M., Taylor, J.P. and Parker, R. (2013) Eukaryotic stress granules are cleared by autophagy and Cdc48/VCP function. Cell, 176, 419-434. PMID: 23791177


There are 356 genes.  Reviewed (0 or Unreviewed (356

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Viv-0361
VIT_07s0031g02300
A5BR49
EIF6
2
LLPS-Viv-0328
VIT_14s0060g00210
F6I4J0
FEN1
3
LLPS-Viv-0304
VIT_09s0002g00930
A5CA52
LSM1
4
LLPS-Viv-1237
VIT_11s0016g00790
D7TCC6
LSM1
5
LLPS-Viv-1482
VIT_14s0060g02240
F6I4M1
LSM4
6
LLPS-Viv-0356
VIT_07s0005g01430
D7U2I1
MCM7
7
LLPS-Viv-1266
VIT_00s0144g00010
D7SYV0
VIT_00s0144g00010
8
LLPS-Viv-1477
VIT_00s0181g00120
F6H7T4
VIT_00s0181g00120
9
LLPS-Viv-0394
VIT_00s0184g00040
F6HJI1
VIT_00s0184g00040
10
LLPS-Viv-0024
VIT_00s0186g00020
A5C9H9
VIT_00s0186g00020
11
LLPS-Viv-0377
VIT_00s0227g00060
F6HCQ7
VIT_00s0227g00060
12
LLPS-Viv-0586
VIT_00s0229g00180
D7U3P5
VIT_00s0229g00180
13
LLPS-Viv-1090
VIT_00s0252g00070
F6HS75
VIT_00s0252g00070
14
LLPS-Viv-2356
VIT_00s0260g00080
F6I7A5
VIT_00s0260g00080
15
LLPS-Viv-1016
VIT_00s0283g00020
D7TYP5
VIT_00s0283g00020
16
LLPS-Viv-0104
VIT_00s0317g00130
F6HRR8
VIT_00s0317g00130
17
LLPS-Viv-0984
VIT_00s0322g00040
F6HD47
VIT_00s0322g00040
18
LLPS-Viv-1605
VIT_00s0880g00020
F6HJU0
VIT_00s0880g00020
19
LLPS-Viv-2023
VIT_00s1372g00020
D7SZ58
VIT_00s1372g00020
20
LLPS-Viv-0823
VIT_00s2623g00010
F6H8F9
VIT_00s2623g00010
21
LLPS-Viv-2110
VIT_01s0010g02370
F6HG38
VIT_01s0010g02370
22
LLPS-Viv-0077
VIT_01s0010g02900
D7TAR8
VIT_01s0010g02900
23
LLPS-Viv-0351
VIT_01s0010g03360
D7TAV5
VIT_01s0010g03360
24
LLPS-Viv-2495
VIT_01s0010g03790
A5BM29
VIT_01s0010g03790
25
LLPS-Viv-1651
VIT_01s0011g00400
D7T9X5
VIT_01s0011g00400
26
LLPS-Viv-1055
VIT_01s0011g00670
A5BGC6
VIT_01s0011g00670
27
LLPS-Viv-1086
VIT_01s0011g01570
D7T9L8
VIT_01s0011g01570
28
LLPS-Viv-0416
VIT_01s0011g02280
F6HF38
VIT_01s0011g02280
29
LLPS-Viv-1424
VIT_01s0011g02820
F6HF25
VIT_01s0011g02820
30
LLPS-Viv-0781
VIT_01s0011g04350
F6HFL6
VIT_01s0011g04350
31
LLPS-Viv-2194
VIT_01s0011g04480
A5AT73
VIT_01s0011g04480
32
LLPS-Viv-0637
VIT_01s0011g04520
F6HFK7
VIT_01s0011g04520
33
LLPS-Viv-1967
VIT_01s0011g05570
F6HFE6
VIT_01s0011g05570
34
LLPS-Viv-1331
VIT_01s0011g06630
A5AL04
VIT_01s0011g06630
35
LLPS-Viv-1964
VIT_01s0026g02730
D7TN60
VIT_01s0026g02730
36
LLPS-Viv-0325
VIT_01s0137g00300
F6GVJ3
VIT_01s0137g00300
37
LLPS-Viv-0772
VIT_01s0137g00420
D7SME1
VIT_01s0137g00420
38
LLPS-Viv-1682
VIT_01s0137g00450
F6GVN8
VIT_01s0137g00450
39
LLPS-Viv-0997
VIT_01s0150g00390
D7TFL2
VIT_01s0150g00390
40
LLPS-Viv-1585
VIT_01s0150g00580
F6HJ95
VIT_01s0150g00580
41
LLPS-Viv-0241
VIT_02s0012g00080
D7TTK4
VIT_02s0012g00080
42
LLPS-Viv-0480
VIT_02s0012g01620
F6HT72
VIT_02s0012g01620
43
LLPS-Viv-1376
VIT_02s0025g01000
D7TVB7
VIT_02s0025g01000
44
LLPS-Viv-1499
VIT_02s0025g01050
D7TVC2
VIT_02s0025g01050
45
LLPS-Viv-1537
VIT_02s0025g01350
D7TVE8
VIT_02s0025g01350
46
LLPS-Viv-0332
VIT_02s0025g03790
F6HUE2
VIT_02s0025g03790
47
LLPS-Viv-2056
VIT_02s0025g04100
D7TW46
VIT_02s0025g04100
48
LLPS-Viv-1917
VIT_02s0025g04580
D7TW88
VIT_02s0025g04580
49
LLPS-Viv-0619
VIT_02s0025g04680
F6HUJ3
VIT_02s0025g04680
50
LLPS-Viv-0047
VIT_02s0033g00420
F6I063
VIT_02s0033g00420
51
LLPS-Viv-0495
VIT_02s0087g00680
F6HJ25
VIT_02s0087g00680
52
LLPS-Viv-2402
VIT_03s0017g00990
F6HTJ0
VIT_03s0017g00990
53
LLPS-Viv-0313
VIT_03s0017g01220
D7TU93
VIT_03s0017g01220
54
LLPS-Viv-1468
VIT_03s0038g00290
D7U5K0
VIT_03s0038g00290
55
LLPS-Viv-0427
VIT_03s0038g00300
D7U5J9
VIT_03s0038g00300
56
LLPS-Viv-0422
VIT_03s0038g00750
D7U5G4
VIT_03s0038g00750
57
LLPS-Viv-1924
VIT_03s0038g00790
A5C5A3
VIT_03s0038g00790
58
LLPS-Viv-1983
VIT_03s0038g02300
D7U564
VIT_03s0038g02300
59
LLPS-Viv-0677
VIT_03s0038g02500
A5C7K8
VIT_03s0038g02500
60
LLPS-Viv-0478
VIT_03s0038g02590
F6I0Z2
VIT_03s0038g02590
61
LLPS-Viv-0497
VIT_03s0038g02760
D7U516
VIT_03s0038g02760
62
LLPS-Viv-0806
VIT_03s0038g02830
D7U509
VIT_03s0038g02830
63
LLPS-Viv-0683
VIT_03s0038g02970
F6I0X3
VIT_03s0038g02970
64
LLPS-Viv-1224
VIT_03s0038g03110
F6I0W3
VIT_03s0038g03110
65
LLPS-Viv-2076
VIT_03s0038g04090
F6I0P9
VIT_03s0038g04090
66
LLPS-Viv-2007
VIT_03s0038g04320
D7U4M8
VIT_03s0038g04320
67
LLPS-Viv-1530
VIT_03s0038g04610
F6I0L2
VIT_03s0038g04610
68
LLPS-Viv-0415
VIT_03s0063g02110
F6HQJ9
VIT_03s0063g02110
69
LLPS-Viv-1626
VIT_03s0088g00450
F6HBQ0
VIT_03s0088g00450
70
LLPS-Viv-0370
VIT_04s0008g00820
F6H392
VIT_04s0008g00820
71
LLPS-Viv-0946
VIT_04s0008g01000
D7STP1
VIT_04s0008g01000
72
LLPS-Viv-1309
VIT_04s0008g02780
D7SU46
VIT_04s0008g02780
73
LLPS-Viv-0192
VIT_04s0008g02850
D7SU52
VIT_04s0008g02850
74
LLPS-Viv-0349
VIT_04s0008g03120
D7SU76
VIT_04s0008g03120
75
LLPS-Viv-1240
VIT_04s0008g03330
D7SU98
VIT_04s0008g03330
76
LLPS-Viv-1397
VIT_04s0008g05020
F6H3T8
VIT_04s0008g05020
77
LLPS-Viv-0576
VIT_04s0008g05330
F6H316
VIT_04s0008g05330
78
LLPS-Viv-2414
VIT_04s0008g05850
F6H3J0
VIT_04s0008g05850
79
LLPS-Viv-1149
VIT_04s0008g06260
D7SV11
VIT_04s0008g06260
80
LLPS-Viv-1072
VIT_04s0008g06470
D7SV28
VIT_04s0008g06470
81
LLPS-Viv-0944
VIT_04s0008g06800
F6H345
VIT_04s0008g06800
82
LLPS-Viv-1171
VIT_04s0008g06860
F6H350
VIT_04s0008g06860
83
LLPS-Viv-0006
VIT_04s0008g07070
D7SV75
VIT_04s0008g07070
84
LLPS-Viv-1517
VIT_04s0023g00920
F6GX12
VIT_04s0023g00920
85
LLPS-Viv-0759
VIT_04s0023g01580
F6GWX4
VIT_04s0023g01580
86
LLPS-Viv-1048
VIT_04s0023g03190
D7SP13
VIT_04s0023g03190
87
LLPS-Viv-1455
VIT_04s0043g00250
F6HI03
VIT_04s0043g00250
88
LLPS-Viv-0629
VIT_04s0043g00760
D7TDT9
VIT_04s0043g00760
89
LLPS-Viv-0097
VIT_04s0044g01090
D7U4G0
VIT_04s0044g01090
90
LLPS-Viv-1088
VIT_04s0044g01140
D7U4F5
VIT_04s0044g01140
91
LLPS-Viv-0671
VIT_05s0020g00780
F6HE40
VIT_05s0020g00780
92
LLPS-Viv-1203
VIT_05s0020g01180
D7T6C5
VIT_05s0020g01180
93
LLPS-Viv-1067
VIT_05s0020g01480
A5BUA6
VIT_05s0020g01480
94
LLPS-Viv-1007
VIT_05s0020g02350
F6HDJ8
VIT_05s0020g02350
95
LLPS-Viv-0869
VIT_05s0020g03500
F6HDQ6
VIT_05s0020g03500
96
LLPS-Viv-0037
VIT_05s0020g03720
F6HDR7
VIT_05s0020g03720
97
LLPS-Viv-1056
VIT_05s0020g04090
F6HDT8
VIT_05s0020g04090
98
LLPS-Viv-2039
VIT_05s0029g00650
F6GWD4
VIT_05s0029g00650
99
LLPS-Viv-1000
VIT_05s0029g01080
F6GWB9
VIT_05s0029g01080
100
LLPS-Viv-0664
VIT_05s0049g01220
D7SZI1
VIT_05s0049g01220
101
LLPS-Viv-1245
VIT_05s0062g00210
A5B4N7
VIT_05s0062g00210
102
LLPS-Viv-0132
VIT_05s0062g00860
F6I488
VIT_05s0062g00860
103
LLPS-Viv-1131
VIT_05s0077g00700
D7SYI9
VIT_05s0077g00700
104
LLPS-Viv-0273
VIT_05s0077g02110
A5BC89
VIT_05s0077g02110
105
LLPS-Viv-2120
VIT_05s0077g02120
F6H6X9
VIT_05s0077g02120
106
LLPS-Viv-0818
VIT_05s0077g02290
D7SYD9
VIT_05s0077g02290
107
LLPS-Viv-0475
VIT_05s0077g02310
D7SYE1
VIT_05s0077g02310
108
LLPS-Viv-0507
VIT_05s0094g00400
D7T2D3
VIT_05s0094g00400
109
LLPS-Viv-2058
VIT_05s0094g00900
F6HAX6
VIT_05s0094g00900
110
LLPS-Viv-1442
VIT_05s0124g00330
F6I3S3
VIT_05s0124g00330
111
LLPS-Viv-1738
VIT_06s0004g00180
D7SLN5
VIT_06s0004g00180
112
LLPS-Viv-1132
VIT_06s0004g00500
F6GUN0
VIT_06s0004g00500
113
LLPS-Viv-2116
VIT_06s0004g02820
D7SKY8
VIT_06s0004g02820
114
LLPS-Viv-0943
VIT_06s0004g02910
D7SKY0
VIT_06s0004g02910
115
LLPS-Viv-1728
VIT_06s0004g03190
D7SKV3
VIT_06s0004g03190
116
LLPS-Viv-1262
VIT_06s0004g04090
D7SKL7
VIT_06s0004g04090
117
LLPS-Viv-1288
VIT_06s0004g05560
F6GUX4
VIT_06s0004g05560
118
LLPS-Viv-0209
VIT_06s0004g05830
D7SK51
VIT_06s0004g05830
119
LLPS-Viv-2080
VIT_06s0004g06300
F6GUT4
VIT_06s0004g06300
120
LLPS-Viv-0918
VIT_06s0004g07060
F6GUM1
VIT_06s0004g07060
121
LLPS-Viv-0090
VIT_06s0004g07100
D7SJS8
VIT_06s0004g07100
122
LLPS-Viv-1989
VIT_06s0004g08220
F6GU75
VIT_06s0004g08220
123
LLPS-Viv-2330
VIT_06s0004g08420
F6GU63
VIT_06s0004g08420
124
LLPS-Viv-0996
VIT_06s0009g00250
F6HAE9
VIT_06s0009g00250
125
LLPS-Viv-1573
VIT_06s0009g03750
F6HA08
VIT_06s0009g03750
126
LLPS-Viv-0953
VIT_06s0009g03810
D7T129
VIT_06s0009g03810
127
LLPS-Viv-1064
VIT_06s0061g00810
A5AEC1
VIT_06s0061g00810
128
LLPS-Viv-0676
VIT_06s0080g00160
F6HHH1
VIT_06s0080g00160
129
LLPS-Viv-0942
VIT_06s0080g00860
D7TCR4
VIT_06s0080g00860
130
LLPS-Viv-0418
VIT_06s0080g01150
A5ACY7
VIT_06s0080g01150
131
LLPS-Viv-0284
VIT_07s0005g00470
D7U294
VIT_07s0005g00470
132
LLPS-Viv-0878
VIT_07s0005g00620
D7U2A7
VIT_07s0005g00620
133
LLPS-Viv-1058
VIT_07s0005g00860
F6HZ72
VIT_07s0005g00860
134
LLPS-Viv-0825
VIT_07s0005g01100
A5ARC5
VIT_07s0005g01100
135
LLPS-Viv-0858
VIT_07s0005g01410
F6HZ97
VIT_07s0005g01410
136
LLPS-Viv-0561
VIT_07s0005g02190
F6HZD9
VIT_07s0005g02190
137
LLPS-Viv-0487
VIT_07s0005g03040
D7U2X3
VIT_07s0005g03040
138
LLPS-Viv-0972
VIT_07s0005g04550
D7U390
VIT_07s0005g04550
139
LLPS-Viv-0112
VIT_07s0005g05860
D7U3G4
VIT_07s0005g05860
140
LLPS-Viv-1614
VIT_07s0031g00160
D7SVT3
VIT_07s0031g00160
141
LLPS-Viv-1105
VIT_07s0031g00210
D7SVT7
VIT_07s0031g00210
142
LLPS-Viv-0425
VIT_07s0031g01990
D7SWA0
VIT_07s0031g01990
143
LLPS-Viv-0477
VIT_07s0031g02190
D7SWC0
VIT_07s0031g02190
144
LLPS-Viv-1576
VIT_07s0031g02510
D7SWF4
VIT_07s0031g02510
145
LLPS-Viv-0876
VIT_07s0095g00710
D7SRQ3
VIT_07s0095g00710
146
LLPS-Viv-0059
VIT_07s0104g00160
D7TPE2
VIT_07s0104g00160
147
LLPS-Viv-0342
VIT_07s0104g01170
F6HQ26
VIT_07s0104g01170
148
LLPS-Viv-0224
VIT_07s0130g00120
F6HGI8
VIT_07s0130g00120
149
LLPS-Viv-1212
VIT_07s0141g00140
F6GXL0
VIT_07s0141g00140
150
LLPS-Viv-0813
VIT_07s0141g00530
F6HWI5
VIT_07s0141g00530
151
LLPS-Viv-1602
VIT_07s0141g00660
D7SQL9
VIT_07s0141g00660
152
LLPS-Viv-0036
VIT_07s0151g00690
A5BYC0
VIT_07s0151g00690
153
LLPS-Viv-0423
VIT_07s0151g00900
D7TDY2
VIT_07s0151g00900
154
LLPS-Viv-0503
VIT_07s0151g00910
D7TDY1
VIT_07s0151g00910
155
LLPS-Viv-1740
VIT_07s0151g01010
F6HI43
VIT_07s0151g01010
156
LLPS-Viv-0598
VIT_07s0205g00150
D7SSH8
VIT_07s0205g00150
157
LLPS-Viv-1255
VIT_08s0007g00190
F6HLD3
VIT_08s0007g00190
158
LLPS-Viv-0173
VIT_08s0007g01820
F6HKX4
VIT_08s0007g01820
159
LLPS-Viv-0331
VIT_08s0007g01960
D7THA3
VIT_08s0007g01960
160
LLPS-Viv-0665
VIT_08s0007g02620
D7TH43
VIT_08s0007g02620
161
LLPS-Viv-1856
VIT_08s0007g02900
D7TJA9
VIT_08s0007g02900
162
LLPS-Viv-1596
VIT_08s0007g04690
F6HKD2
VIT_08s0007g04690
163
LLPS-Viv-0408
VIT_08s0007g06370
F6HLJ9
VIT_08s0007g06370
164
LLPS-Viv-2230
VIT_08s0007g06720
D7TIC4
VIT_08s0007g06720
165
LLPS-Viv-0644
VIT_08s0007g07020
D7TIA0
VIT_08s0007g07020
166
LLPS-Viv-0638
VIT_08s0007g07130
F6HLF1
VIT_08s0007g07130
167
LLPS-Viv-1164
VIT_08s0007g07180
F6HLF0
VIT_08s0007g07180
168
LLPS-Viv-0383
VIT_08s0007g08370
A5BIQ8
VIT_08s0007g08370
169
LLPS-Viv-0317
VIT_08s0040g00570
D7TQ37
VIT_08s0040g00570
170
LLPS-Viv-2236
VIT_08s0040g00600
F6HQR1
VIT_08s0040g00600
171
LLPS-Viv-0728
VIT_08s0040g00610
F6HQR0
VIT_08s0040g00610
172
LLPS-Viv-1220
VIT_08s0040g00720
F6HQQ4
VIT_08s0040g00720
173
LLPS-Viv-0570
VIT_08s0040g01270
D7TQR2
VIT_08s0040g01270
174
LLPS-Viv-2013
VIT_08s0040g01700
D7TQM9
VIT_08s0040g01700
175
LLPS-Viv-1041
VIT_08s0040g02420
F6HQZ2
VIT_08s0040g02420
176
LLPS-Viv-2026
VIT_08s0040g02830
F6HQX1
VIT_08s0040g02830
177
LLPS-Viv-0666
VIT_08s0056g01520
F6HMN4
VIT_08s0056g01520
178
LLPS-Viv-0167
VIT_08s0105g00330
D7SY11
VIT_08s0105g00330
179
LLPS-Viv-0452
VIT_08s0105g00550
D7SY28
VIT_08s0105g00550
180
LLPS-Viv-1673
VIT_08s0217g00030
D7SRG8
VIT_08s0217g00030
181
LLPS-Viv-0168
VIT_08s0217g00110
F6GY72
VIT_08s0217g00110
182
LLPS-Viv-0795
VIT_09s0002g00170
D7TZI9
VIT_09s0002g00170
183
LLPS-Viv-2176
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LLPS-Viv-2465
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