Oryza glaberrima      Regulator


※ Regulator introduction

    The LLPS of scaffold proteins and the stability of MLOs can be modulated by PTMs and other proteins (1-4). For example, arginine methylation of FUS by PRMT1 or PRMT8 reduces the LLPS of FUS, and both PRMTs were classified as PTM regulators. Also, Buchan et al. conducted a microscopy-based genetic screen of >4000 gene deletions in Saccharomyces cerevisiae, and identified 125 genes to be involved in regulating the stability and formation of P-bodies and/or stress granules (5). None of these proteins have been characterized to undergo LLPS, and here we classified all the 125 proteins as MLO regulators.

References
1. Vernon, R.M. and Forman-Kay, J.D. (2019) First-generation predictors of biological protein phase separation. Current opinion in structural biology 58, 88-96. PMID: 31252218
2. Wang, Z. and Zhang, H. (2019) Phase Separation, Transition, and Autophagic Degradation of Proteins in Development and Pathogenesis. Trends in cell biology, 29, 417-427. PMID: 30826216
3. Alberti, S., Gladfelter, A. and Mittag, T. (2019) Considerations and challenges in studying liquid-liquid phase separation and biomolecular condensates. Cell, 176, 419-434. PMID: 30682370
4. Bergeron-Sandoval, L.P., Safaee, N. and Michnick, S.W. (2016) Mechanisms and Consequences of Macromolecular Phase Separation. Cell, 165, 1067-1079. PMID: 27203111
5. Buchan, J.R., Kolaitis, R.M., Taylor, J.P. and Parker, R. (2013) Eukaryotic stress granules are cleared by autophagy and Cdc48/VCP function. Cell, 176, 419-434. PMID: 23791177


There are 334 genes.  Reviewed (0 or Unreviewed (334

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Org-0005
ORGLA12G0088300
I1R5S7
2
LLPS-Org-0008
ORGLA11G0041600
I1QY24
3
LLPS-Org-0026
ORGLA07G0114100
I1QAJ9
4
LLPS-Org-0036
ORGLA03G0164200
I1PB96
5
LLPS-Org-0041
ORGLA03G0284800
I1PEQ2
6
LLPS-Org-0047
ORGLA12G0037300
I1R4B7
7
LLPS-Org-0059
ORGLA12G0049100
I1R4N5
8
LLPS-Org-0063
ORGLA03G0383000
I1PHI4
9
LLPS-Org-0064
ORGLA10G0151800
I1QWD5
10
LLPS-Org-0073
ORGLA05G0247800
I1PYN0
11
LLPS-Org-0075
ORGLA03G0012500
I1P6X9
12
LLPS-Org-0079
ORGLA06G0042600
I1PZW3
13
LLPS-Org-0083
ORGLA02G0272400
I1P418
14
LLPS-Org-0085
ORGLA07G0098000
I1QA38
15
LLPS-Org-0091
ORGLA03G0223400
I1PCY8
16
LLPS-Org-0093
ORGLA03G0005500
I1P6Q9
17
LLPS-Org-0096
ORGLA11G0181700
I1R225
18
LLPS-Org-0100
ORGLA05G0215400
I1PXQ6
19
LLPS-Org-0101
ORGLA01G0048100
I1NKU1
20
LLPS-Org-0102
ORGLA06G0170400
I1Q3J1
21
LLPS-Org-0104
ORGLA04G0194400
I1PP25
22
LLPS-Org-0107
ORGLA03G0350900
I1PGL3
23
LLPS-Org-0110
ORGLA10G0145400
I1QW71
24
LLPS-Org-0114
ORGLA01G0207400
I1NQD4
25
LLPS-Org-0121
ORGLA03G0159700
I1PB51
26
LLPS-Org-0125
ORGLA06G0036300
I1PZQ0
27
LLPS-Org-0127
ORGLA03G0368100
I1PH35
28
LLPS-Org-0144
ORGLA03G0344500
I1PGE9
29
LLPS-Org-0147
ORGLA01G0079100
I1NLQ1
30
LLPS-Org-0150
ORGLA06G0220400
I1Q4Z1
31
LLPS-Org-0154
ORGLA08G0093900
I1QHN8
32
LLPS-Org-0157
ORGLA01G0257300
I1NRT3
33
LLPS-Org-0163
ORGLA06G0044300
I1PZY0
34
LLPS-Org-0164
ORGLA05G0070800
I1PTL0
35
LLPS-Org-0170
ORGLA08G0082400
I1QHC3
36
LLPS-Org-0171
ORGLA08G0003700
I1QF36
37
LLPS-Org-0176
ORGLA01G0130800
I1NN68
38
LLPS-Org-0178
ORGLA08G0077900
I1QH78
39
LLPS-Org-0180
ORGLA03G0405700
I1PI61
40
LLPS-Org-0183
ORGLA09G0006500
I1QLY6
41
LLPS-Org-0189
ORGLA02G0205900
I1P253
42
LLPS-Org-0200
ORGLA04G0248100
I1PQL2
43
LLPS-Org-0205
ORGLA04G0265600
I1PR37
44
LLPS-Org-0206
ORGLA05G0113100
I1PUT3
45
LLPS-Org-0211
ORGLA02G0191500
I1P1Q9
46
LLPS-Org-0212
ORGLA02G0267300
I1P3W7
47
LLPS-Org-0216
ORGLA09G0050900
I1QN80
48
LLPS-Org-0218
ORGLA09G0154600
I1QR67
49
LLPS-Org-0225
ORGLA04G0270800
I1PR89
50
LLPS-Org-0227
ORGLA08G0028300
I1QFT2
51
LLPS-Org-0245
ORGLA04G0189600
I1PNX7
52
LLPS-Org-0249
ORGLA04G0195500
I1PP36
53
LLPS-Org-0250
ORGLA06G0211000
I1Q4P7
54
LLPS-Org-0253
ORGLA10G0083900
I1QUF6
55
LLPS-Org-0254
ORGLA11G0115300
I1R061
56
LLPS-Org-0273
ORGLA05G0185900
I1PWW1
57
LLPS-Org-0288
ORGLA06G0070100
I1Q0N8
58
LLPS-Org-0293
ORGLA04G0187900
I1PNW0
59
LLPS-Org-0321
ORGLA09G0018500
I1QMA6
60
LLPS-Org-0325
ORGLA01G0253500
I1NRP5
61
LLPS-Org-0327
ORGLA03G0080400
I1P8V8
62
LLPS-Org-0332
ORGLA05G0183600
I1PWT8
63
LLPS-Org-0334
ORGLA01G0007100
I1NJN1
64
LLPS-Org-0342
ORGLA03G0047600
I1P7Y0
65
LLPS-Org-0343
ORGLA03G0130800
I1PAB2
66
LLPS-Org-0344
ORGLA06G0109900
I1Q1T6
67
LLPS-Org-0345
ORGLA05G0079200
I1PTU4
68
LLPS-Org-0346
ORGLA06G0016700
I1PZ55
69
LLPS-Org-0362
ORGLA06G0255900
I1Q5Z6
70
LLPS-Org-0363
ORGLA01G0357100
I1NUN1
71
LLPS-Org-0364
ORGLA01G0402900
I1NVY9
72
LLPS-Org-0367
ORGLA02G0248800
I1P3D2
73
LLPS-Org-0368
ORGLA12G0114400
I1R6I8
74
LLPS-Org-0378
ORGLA02G0194400
I1P1T8
75
LLPS-Org-0380
ORGLA03G0217800
I1PCT2
76
LLPS-Org-0384
ORGLA09G0119300
I1QQ64
77
LLPS-Org-0386
ORGLA02G0042200
I1NXG6
78
LLPS-Org-0391
ORGLA03G0021000
I1P764
79
LLPS-Org-0399
ORGLA01G0072900
I1NLI9
80
LLPS-Org-0406
ORGLA07G0056400
I1Q8X2
81
LLPS-Org-0411
ORGLA03G0100300
I1P9F7
82
LLPS-Org-0414
ORGLA12G0086500
I1R5Q9
83
LLPS-Org-0416
ORGLA09G0120900
I1QQ80
84
LLPS-Org-0418
ORGLA01G0390900
I1NVL9
85
LLPS-Org-0423
ORGLA12G0053400
I1R4S8
86
LLPS-Org-0424
ORGLA02G0153500
I1PKG5
87
LLPS-Org-0430
ORGLA10G0142900
I1QW46
88
LLPS-Org-0434
ORGLA03G0131200
I1PAB6
89
LLPS-Org-0435
ORGLA09G0112000
I1QPZ1
90
LLPS-Org-0438
ORGLA04G0228800
I1PQ19
91
LLPS-Org-0444
ORGLA04G0233300
I1PQ64
92
LLPS-Org-0447
ORGLA06G0041600
I1PZV3
93
LLPS-Org-0459
ORGLA03G0228300
I1PD37
94
LLPS-Org-0474
ORGLA03G0037600
I1P7N0
95
LLPS-Org-0475
ORGLA10G0034800
I1QT15
96
LLPS-Org-0482
ORGLA07G0170900
I1QC67
97
LLPS-Org-0499
ORGLA05G0003500
I1PRN7
98
LLPS-Org-0500
ORGLA02G0172000
I1P164
99
LLPS-Org-0501
ORGLA02G0127200
I1NZW6
100
LLPS-Org-0509
ORGLA03G0256700
I1PDX1
101
LLPS-Org-0514
ORGLA08G0225200
I1QLF1
102
LLPS-Org-0519
ORGLA05G0028600
I1PSD8
103
LLPS-Org-0531
ORGLA07G0195200
I1QCW0
104
LLPS-Org-0541
ORGLA02G0351500
I1PKK7
105
LLPS-Org-0544
ORGLA01G0219800
I1NQQ8
106
LLPS-Org-0558
ORGLA03G0279500
I1PEJ9
107
LLPS-Org-0569
ORGLA01G0179600
I1NPK6
108
LLPS-Org-0574
ORGLA12G0084000
I1R5N4
109
LLPS-Org-0578
ORGLA03G0276600
I1PEH0
110
LLPS-Org-0590
ORGLA07G0062700
I1Q935
111
LLPS-Org-0591
ORGLA04G0042700
I1PJQ8
112
LLPS-Org-0594
ORGLA10G0119100
I1QVF8
113
LLPS-Org-0598
ORGLA05G0014600
I1PRZ8
114
LLPS-Org-0607
ORGLA10G0083000
I1QUE7
115
LLPS-Org-0620
ORGLA08G0116600
I1QIB5
116
LLPS-Org-0623
ORGLA03G0108400
I1P9N8
117
LLPS-Org-0640
ORGLA08G0189700
I1QKE6
118
LLPS-Org-0646
ORGLA11G0116800
I1R076
119
LLPS-Org-0669
ORGLA10G0033200
I1QSZ9
120
LLPS-Org-0682
ORGLA03G0346700
I1PGH1
121
LLPS-Org-0684
ORGLA07G0103500
I1QA93
122
LLPS-Org-0698
ORGLA02G0209900
I1P293
123
LLPS-Org-0702
ORGLA01G0095800
I1NM68
124
LLPS-Org-0704
ORGLA07G0083900
I1Q9P7
125
LLPS-Org-0710
ORGLA03G0000700
I1P6L1
126
LLPS-Org-0711
ORGLA03G0264100
I1PE45
127
LLPS-Org-0712
ORGLA06G0052000
I1Q057
128
LLPS-Org-0716
ORGLA03G0260300
I1PE07
129
LLPS-Org-0717
ORGLA02G0103800
I1NZ82
130
LLPS-Org-0725
ORGLA03G0039400
I1P7P8
131
LLPS-Org-0726
ORGLA07G0264100
I1QEU9
132
LLPS-Org-0727
ORGLA01G0358700
I1NUP7
133
LLPS-Org-0730
ORGLA03G0280000
I1PEK4
134
LLPS-Org-0740
ORGLA05G0037100
I1PSM3
135
LLPS-Org-0741
ORGLA05G0092600
I1PU78
136
LLPS-Org-0749
ORGLA02G0312100
I1P567
137
LLPS-Org-0751
ORGLA03G0085100
I1P905
138
LLPS-Org-0758
ORGLA07G0208800
I1QD96
139
LLPS-Org-0769
ORGLA03G0283100
I1PEN5
140
LLPS-Org-0777
ORGLA03G0162100
I1PB75
141
LLPS-Org-0778
ORGLA05G0036300
I1PSL5
142
LLPS-Org-0797
ORGLA04G0136100
I1PME2
143
LLPS-Org-0802
ORGLA01G0327800
I1NTT8
144
LLPS-Org-0808
ORGLA05G0224200
I1PXZ4
145
LLPS-Org-0809
ORGLA08G0126600
I1QIL5
146
LLPS-Org-0810
ORGLA07G0058500
I1Q8Z3
147
LLPS-Org-0822
ORGLA03G0015900
I1P713
148
LLPS-Org-0828
ORGLA08G0040700
I1QG56
149
LLPS-Org-0835
ORGLA02G0016900
I1NWR3
150
LLPS-Org-0836
ORGLA10G0037900
I1QT46
151
LLPS-Org-0841
ORGLA06G0063900
I1Q0H6
152
LLPS-Org-0844
ORGLA03G0047400
I1P7X8
153
LLPS-Org-0875
ORGLA01G0012600
I1NJT6
154
LLPS-Org-0879
ORGLA12G0017100
I1R3R5
155
LLPS-Org-0883
ORGLA01G0205600
I1NQB6
156
LLPS-Org-0896
ORGLA09G0143900
I1QQW0
157
LLPS-Org-0899
ORGLA03G0120100
I1PA05
158
LLPS-Org-0902
ORGLA06G0189800
I1Q435
159
LLPS-Org-0921
ORGLA03G0409900
I1PIA3
160
LLPS-Org-0931
ORGLA05G0131400
I1PVB6
161
LLPS-Org-0942
ORGLA11G0091800
I1QZH6
162
LLPS-Org-0946
ORGLA06G0042000
I1PZV7
163
LLPS-Org-0952
ORGLA05G0202400
I1PXC6
164
LLPS-Org-0954
ORGLA01G0356300
I1NUM3
165
LLPS-Org-0958
ORGLA02G0010600
I1NWK0
166
LLPS-Org-0961
ORGLA02G0262400
I1P3R8
167
LLPS-Org-0979
ORGLA11G0108300
I1QZZ1
168
LLPS-Org-0999
ORGLA03G0313000
I1PFI4
169
LLPS-Org-1010
ORGLA02G0206500
I1P259
170
LLPS-Org-1019
ORGLA03G0015700
I1P711
171
LLPS-Org-1021
ORGLA02G0250900
I1P3F3
172
LLPS-Org-1022
ORGLA01G0005600
I1NJL6
173
LLPS-Org-1023
ORGLA06G0021500
I1PZA2
174
LLPS-Org-1025
ORGLA02G0163400
I1P0X8
175
LLPS-Org-1026
ORGLA02G0089600
I1NYU0
176
LLPS-Org-1029
ORGLA10G0139700
I1QW14
177
LLPS-Org-1032
ORGLA06G0053900
I1Q076
178
LLPS-Org-1036
ORGLA08G0001900
I1QF18
179
LLPS-Org-1061
ORGLA02G0321300
I1P5F7
180
LLPS-Org-1066
ORGLA06G0006500
I1PYV3
181
LLPS-Org-1070
ORGLA06G0265100
I1QC10
182
LLPS-Org-1079
ORGLA02G0306100
I1P505
183
LLPS-Org-1091
ORGLA11G0145100
I1R109
184
LLPS-Org-1099
ORGLA07G0196800
I1QCX6
185
LLPS-Org-1102
ORGLA01G0156400
I1NNX4
186
LLPS-Org-1112
ORGLA01G0348400
I1NUE4
187
LLPS-Org-1113
ORGLA07G0110700
I1QB93
188
LLPS-Org-1121
ORGLA02G0016700
I1NWR1
189
LLPS-Org-1125
ORGLA07G0152200
I1QBN0
190
LLPS-Org-1127
ORGLA06G0025300
I1PZE0
191
LLPS-Org-1130
ORGLA08G0231100
I1QLL0
192
LLPS-Org-1136
ORGLA02G0160100
I1P0U5
193
LLPS-Org-1138
ORGLA01G0226200
I1NQX2
194
LLPS-Org-1142
ORGLA02G0030400
I1NX48
195
LLPS-Org-1150
ORGLA03G0155600
I1PB10
196
LLPS-Org-1169
ORGLA04G0228600
I1PQ17
197
LLPS-Org-1171
ORGLA03G0302300
I1PF77
198
LLPS-Org-1172
ORGLA06G0156800
I1Q355
199
LLPS-Org-1188
ORGLA07G0195700
I1QCW5
200
LLPS-Org-1196
ORGLA08G0061500
I1QGR4
201
LLPS-Org-1214
ORGLA10G0073500
I1QU52
202
LLPS-Org-1225
ORGLA03G0266500
I1PE69
203
LLPS-Org-1231
ORGLA02G0329300
I1P5N7
204
LLPS-Org-1242
ORGLA02G0192700
I1P1S1
205
LLPS-Org-1243
ORGLA11G0033000
I1QXT8
206
LLPS-Org-1249
ORGLA05G0051200
I1PT14
207
LLPS-Org-1256
ORGLA03G0356900
I1PGS3
208
LLPS-Org-1269
ORGLA10G0133500
I1QVV2
209
LLPS-Org-1272
ORGLA03G0381700
I1PHH1
210
LLPS-Org-1292
ORGLA12G0071900
I1R5B3
211
LLPS-Org-1300
ORGLA05G0178200
I1PWN4
212
LLPS-Org-1305
ORGLA02G0245300
I1P397
213
LLPS-Org-1309
ORGLA06G0123500
I1Q272
214
LLPS-Org-1317
ORGLA04G0246800
I1PQJ9
215
LLPS-Org-1319
ORGLA06G0055100
I1Q088
216
LLPS-Org-1321
ORGLA01G0303500
I1NT45
217
LLPS-Org-1326
ORGLA01G0148000
I1NNP0
218
LLPS-Org-1329
ORGLA03G0123700
I1PA41
219
LLPS-Org-1334
ORGLA06G0198700
I1Q4C4
220
LLPS-Org-1337
ORGLA11G0180000
I1R208
221
LLPS-Org-1339
ORGLA02G0004100
I1NWD5
222
LLPS-Org-1351
ORGLA01G0241200
I1NRC2
223
LLPS-Org-1360
ORGLA02G0340300
I1PKT8
224
LLPS-Org-1364
ORGLA07G0216800
I1QDH6
225
LLPS-Org-1369
ORGLA08G0229600
I1QLJ5
226
LLPS-Org-1376
ORGLA03G0193600
I1PC40
227
LLPS-Org-1379
ORGLA05G0105200
I1PUK4
228
LLPS-Org-1388
ORGLA01G0183200
I1NPP2
229
LLPS-Org-1393
ORGLA08G0102400
I1QHX3
230
LLPS-Org-1394
ORGLA03G0162400
I1PB78
231
LLPS-Org-1396
ORGLA05G0090000
I1PU52
232
LLPS-Org-1411
ORGLA04G0236200
I1PQ93
233
LLPS-Org-1414
ORGLA10G0060300
I1QTS0
234
LLPS-Org-1418
ORGLA05G0188400
I1PWY6
235
LLPS-Org-1438
ORGLA04G0039900
I1PJN0
236
LLPS-Org-1439
ORGLA04G0142400
I1PMK5
237
LLPS-Org-1440
ORGLA08G0036500
I1QG14
238
LLPS-Org-1443
ORGLA07G0036500
I1Q8C3
239
LLPS-Org-1450
ORGLA10G0037200
I1QT39
240
LLPS-Org-1451
ORGLA04G0185600
I1PNT7
241
LLPS-Org-1458
ORGLA06G0170800
I1Q3J5
242
LLPS-Org-1463
ORGLA01G0047600
I1NKT6
243
LLPS-Org-1467
ORGLA03G0162300
I1PB77
244
LLPS-Org-1471
ORGLA06G0232600
I1Q5B3
245
LLPS-Org-1472
ORGLA09G0119000
I1QQ61
246
LLPS-Org-1477
ORGLA05G0225900
I1PY11
247
LLPS-Org-1498
ORGLA07G0059100
I1Q8Z9
248
LLPS-Org-1502
ORGLA07G0029600
I1Q854
249
LLPS-Org-1517
ORGLA05G0196000
I1PX62
250
LLPS-Org-1524
ORGLA03G0256300
I1PDW7
251
LLPS-Org-1531
ORGLA12G0085500
I1R5P9
252
LLPS-Org-1534
ORGLA04G0126400
I1PM45
253
LLPS-Org-1550
ORGLA02G0029000
I1NX34
254
LLPS-Org-1552
ORGLA07G0156400
I1QBS2
255
LLPS-Org-1557
ORGLA04G0105900
I1PLJ0
256
LLPS-Org-1558
ORGLA03G0190900
I1PC13
257
LLPS-Org-1582
ORGLA01G0308900
I1NT99
258
LLPS-Org-1585
ORGLA11G0020200
I1QXG0
259
LLPS-Org-1588
ORGLA02G0162000
I1P0W4
260
LLPS-Org-1591
ORGLA10G0136000
I1QVX7
261
LLPS-Org-1606
ORGLA06G0187200
I1Q409
262
LLPS-Org-1610
ORGLA06G0131100
I1Q2E8
263
LLPS-Org-1614
ORGLA05G0085700
I1PU09
264
LLPS-Org-1615
ORGLA02G0286900
I1P4G3
265
LLPS-Org-1632
ORGLA01G0160800
I1NP18
266
LLPS-Org-1637
ORGLA09G0141000
I1QQT1
267
LLPS-Org-1643
ORGLA03G0033900
I1P7J3
268
LLPS-Org-1645
ORGLA09G0127900
I1QQF0
269
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