Erinaceus europaeus      Regulator


※ Regulator introduction

    The LLPS of scaffold proteins and the stability of MLOs can be modulated by PTMs and other proteins (1-4). For example, arginine methylation of FUS by PRMT1 or PRMT8 reduces the LLPS of FUS, and both PRMTs were classified as PTM regulators. Also, Buchan et al. conducted a microscopy-based genetic screen of >4000 gene deletions in Saccharomyces cerevisiae, and identified 125 genes to be involved in regulating the stability and formation of P-bodies and/or stress granules (5). None of these proteins have been characterized to undergo LLPS, and here we classified all the 125 proteins as MLO regulators.

References
1. Vernon, R.M. and Forman-Kay, J.D. (2019) First-generation predictors of biological protein phase separation. Current opinion in structural biology 58, 88-96. PMID: 31252218
2. Wang, Z. and Zhang, H. (2019) Phase Separation, Transition, and Autophagic Degradation of Proteins in Development and Pathogenesis. Trends in cell biology, 29, 417-427. PMID: 30826216
3. Alberti, S., Gladfelter, A. and Mittag, T. (2019) Considerations and challenges in studying liquid-liquid phase separation and biomolecular condensates. Cell, 176, 419-434. PMID: 30682370
4. Bergeron-Sandoval, L.P., Safaee, N. and Michnick, S.W. (2016) Mechanisms and Consequences of Macromolecular Phase Separation. Cell, 165, 1067-1079. PMID: 27203111
5. Buchan, J.R., Kolaitis, R.M., Taylor, J.P. and Parker, R. (2013) Eukaryotic stress granules are cleared by autophagy and Cdc48/VCP function. Cell, 176, 419-434. PMID: 23791177


There are 164 genes.  Reviewed (0 or Unreviewed (164

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Ere-0605
ENSEEUG00000006534.1
2
LLPS-Ere-0746
ENSEEUG00000014575.1
3
LLPS-Ere-0121
ENSEEUG00000014690.1
A0A1S3AGQ1
ABT1
4
LLPS-Ere-0529
ENSEEUG00000006829.1
A0A1S3AT62
ADAMTS8
5
LLPS-Ere-0676
ENSEEUG00000010750.1
A0A1S3AM88
AIF1
6
LLPS-Ere-0252
ENSEEUG00000005832.1
A0A1S3AEY7
ANXA2
7
LLPS-Ere-0683
ENSEEUG00000010693.1
A0A1S2ZQF8
APTX
8
LLPS-Ere-0363
ENSEEUG00000006960.1
A0A1S3W8P7
ARHGEF4
9
LLPS-Ere-0829
ENSEEUG00000008815.1
A0A1S3W353
ATG3
10
LLPS-Ere-0141
ENSEEUG00000008547.1
A0A1S3ACU8
ATP1A3
11
LLPS-Ere-0611
ENSEEUG00000010590.1
A0A1S2ZL96
ATP2A3
12
LLPS-Ere-0586
ENSEEUG00000013340.1
A0A1S2ZRF4
ATP6V1E2
13
LLPS-Ere-0112
ENSEEUG00000001386.1
A0A1S2ZY07
ATP6V1F
14
LLPS-Ere-0105
ENSEEUG00000005437.1
A0A1S2Z9Y2
BOP1
15
LLPS-Ere-0398
ENSEEUG00000002959.1
A0A1S3AEB2
CAMP
16
LLPS-Ere-0298
ENSEEUG00000014253.1
A0A1S3A8M3
CASC3
17
LLPS-Ere-0839
ENSEEUG00000001001.1
A0A1S2ZJ80
CCL17
18
LLPS-Ere-0064
ENSEEUG00000012534.1
A0A1S3AS68
CDC25B
19
LLPS-Ere-0583
ENSEEUG00000007834.1
A0A1S2ZCW6
CDK1
20
LLPS-Ere-0349
ENSEEUG00000001983.1
A0A1S3A0X3
CFDP1
21
LLPS-Ere-0459
ENSEEUG00000005342.1
A0A1S3WGB1
CHIA
22
LLPS-Ere-0160
ENSEEUG00000015895.1
A0A1S2ZW05
CKS1B
23
LLPS-Ere-0227
ENSEEUG00000015382.1
A0A1S2ZZY8
CNOT6
24
LLPS-Ere-0231
ENSEEUG00000010986.1
A0A1S2ZAC9
CNOT7
25
LLPS-Ere-0119
ENSEEUG00000000480.1
A0A1S2ZZG2
DDX20
26
LLPS-Ere-0235
ENSEEUG00000015035.1
A0A1S3ABK4
DDX39A
27
LLPS-Ere-0702
ENSEEUG00000002817.1
A0A1S2ZLD4
DDX3X
28
LLPS-Ere-0063
ENSEEUG00000003323.1
A0A1S3WVK8
DKC1
29
LLPS-Ere-0975
ENSEEUG00000008392.1
A0A1S3AFQ8
DNAJB4
30
LLPS-Ere-0096
ENSEEUG00000010610.1
A0A1S3AAC6
DUSP3
31
LLPS-Ere-0790
ENSEEUG00000001131.1
A0A1S3ANK1
DYNC1I2
32
LLPS-Ere-0389
ENSEEUG00000000805.1
A0A1S3A2Y1
DYRK2
33
LLPS-Ere-0317
ENSEEUG00000013544.1
A0A1S3AI67
EIF1
34
LLPS-Ere-0046
ENSEEUG00000010225.1
A0A1S2ZX01
EIF2S1
35
LLPS-Ere-0440
ENSEEUG00000004495.1
A0A1S2ZER5
EIF4B
36
LLPS-Ere-0450
ENSEEUG00000000860.1
A0A1S3WJ74
EIF4ENIF1
37
LLPS-Ere-0473
ENSEEUG00000007758.1
A0A1S3WS74
ERH
38
LLPS-Ere-0490
ENSEEUG00000014570.1
A0A1S2ZT58
EXOSC3
39
LLPS-Ere-0502
ENSEEUG00000007898.1
A0A1S3WWT9
FAM118B
40
LLPS-Ere-0493
ENSEEUG00000000738.1
A0A1S2ZZB8
FAM98A
41
LLPS-Ere-0731
ENSEEUG00000011096.1
A0A1S2ZFP3
FAU
42
LLPS-Ere-0143
ENSEEUG00000000379.1
A0A1S2ZDE9
FGF10
43
LLPS-Ere-0934
ENSEEUG00000001469.1
A0A1S3WJX5
FTSJ1
44
LLPS-Ere-0650
ENSEEUG00000006823.1
A0A1S3W5C5
FXR1
45
LLPS-Ere-0553
ENSEEUG00000004733.1
A0A1S2ZL65
GEMIN6
46
LLPS-Ere-0591
ENSEEUG00000008223.1
A0A1S3A073
GMPPB
47
LLPS-Ere-0434
ENSEEUG00000002395.1
A0A1S3WEN9
GNG12
48
LLPS-Ere-0448
ENSEEUG00000004427.1
A0A1S2ZH10
GNL3
49
LLPS-Ere-0101
ENSEEUG00000004667.1
A0A1S3A3D3
HAVCR2
50
LLPS-Ere-0891
ENSEEUG00000003371.1
A0A1S2ZW10
HAX1
51
LLPS-Ere-0444
ENSEEUG00000009872.1
A0A1S2ZZD0
HOXA9
52
LLPS-Ere-0085
ENSEEUG00000004519.1
A0A1S2ZE52
HSPB1
53
LLPS-Ere-0246
ENSEEUG00000005490.1
A0A1S3A2V7
IFNG
54
LLPS-Ere-0156
ENSEEUG00000000715.1
A0A1S2ZA23
IFRD1
55
LLPS-Ere-0228
ENSEEUG00000007001.1
A0A1S3W2S4
IKBKAP
56
LLPS-Ere-0222
ENSEEUG00000008395.1
A0A1S3A074
IP6K1
57
LLPS-Ere-0131
ENSEEUG00000010368.1
A0A1S3A0M5
IP6K3
58
LLPS-Ere-0115
ENSEEUG00000001213.1
A0A1S3AHI3
KPNA3
59
LLPS-Ere-0844
ENSEEUG00000003058.1
A0A1S2ZE23
KRAS
60
LLPS-Ere-0344
ENSEEUG00000011609.1
A0A1S2ZC88
LOC103108194
61
LLPS-Ere-0496
ENSEEUG00000003492.1
A0A1S3W4S7
LOC103108797
62
LLPS-Ere-0299
ENSEEUG00000011216.1
A0A1S2ZDZ9
LOC103108887
63
LLPS-Ere-0125
ENSEEUG00000015530.1
A0A1S2ZKX5
LOC103111588
64
LLPS-Ere-1019
ENSEEUG00000001237.1
A0A1S3W8Y6
LOC103112010
65
LLPS-Ere-0416
ENSEEUG00000013144.1
A0A1S2ZP85
LOC103112914
66
LLPS-Ere-0724
ENSEEUG00000014595.1
A0A1S2ZQB3
LOC103113316
67
LLPS-Ere-0729
ENSEEUG00000011060.1
A0A1S2ZS06
LOC103113977
68
LLPS-Ere-0563
ENSEEUG00000005920.1
A0A1S2ZTU9
LOC103114676
69
LLPS-Ere-0478
ENSEEUG00000006929.1
A0A1S3A3C6
LOC103118370
70
LLPS-Ere-0286
ENSEEUG00000004020.1
A0A1S3A5K2
LOC103119391
71
LLPS-Ere-0256
ENSEEUG00000009125.1
A0A1S3A719
LOC103119943
72
LLPS-Ere-0983
ENSEEUG00000006126.1
A0A1S3A9U3
LOC103121074
73
LLPS-Ere-0122
ENSEEUG00000006148.1
A0A1S3WQS4
LOC103123964
74
LLPS-Ere-0034
ENSEEUG00000008802.1
A0A1S3AJI0
LOC103125078
75
LLPS-Ere-0114
ENSEEUG00000012973.1
A0A1S3WU75
LOC103125758
76
LLPS-Ere-0455
ENSEEUG00000004277.1
A0A1S3ASJ5
LOC103128941
77
LLPS-Ere-0055
ENSEEUG00000015181.1
A0A1S2ZBD2
LSM1
78
LLPS-Ere-0245
ENSEEUG00000012032.1
A0A1S3W509
LSM10
79
LLPS-Ere-1034
ENSEEUG00000010814.1
A0A1S3AIX0
LSM11
80
LLPS-Ere-0203
ENSEEUG00000015699.1
A0A1S3ARI4
LSM14A
81
LLPS-Ere-0327
ENSEEUG00000015908.1
A0A1S3AFN9
MAGOH
82
LLPS-Ere-0560
ENSEEUG00000009934.1
A0A1S3W6X7
MARK2
83
LLPS-Ere-0179
ENSEEUG00000006299.1
A0A1S3WWY6
MAVS
84
LLPS-Ere-0595
ENSEEUG00000007110.1
A0A1S3A091
MON1A
85
LLPS-Ere-0681
ENSEEUG00000010352.1
A0A1S3ABC4
MRPS18B
86
LLPS-Ere-0697
ENSEEUG00000010458.1
A0A1S3ADG9
NACA
87
LLPS-Ere-0597
ENSEEUG00000002993.1
A0A1S3ADA9
NCOA5
88
LLPS-Ere-0211
ENSEEUG00000011640.1
A0A1S3AKE6
NEDD8
89
LLPS-Ere-0068
ENSEEUG00000008535.1
A0A1S3AL27
NIFK
90
LLPS-Ere-0554
ENSEEUG00000014404.1
A0A1S3WSN5
NONO
91
LLPS-Ere-0516
ENSEEUG00000006301.1
A0A1S2Z9P4
NPBWR1
92
LLPS-Ere-0021
ENSEEUG00000003470.1
A0A1S2ZDM4
NUTF2
93
LLPS-Ere-0249
ENSEEUG00000013818.1
A0A1S3WF80
NXT1
94
LLPS-Ere-0058
ENSEEUG00000002701.1
A0A1S3ABM3
PABPC1
95
LLPS-Ere-0804
ENSEEUG00000011997.1
A0A1S3AS98
PAK7
96
LLPS-Ere-0397
ENSEEUG00000012056.1
A0A1S3AMA0
PARP2
97
LLPS-Ere-0446
ENSEEUG00000012531.1
A0A1S2ZT52
PAX5
98
LLPS-Ere-0803
ENSEEUG00000008363.1
A0A1S2ZN10
PDHX
99
LLPS-Ere-1001
ENSEEUG00000015930.1
A0A1S3AEZ4
POLL
100
LLPS-Ere-0166
ENSEEUG00000005471.1
A0A1S3A782
POLR1C
101
LLPS-Ere-0027
ENSEEUG00000011014.1
A0A1S2ZHB4
POLR2F
102
LLPS-Ere-0191
ENSEEUG00000009371.1
A0A1S2ZDW0
PPIL1
103
LLPS-Ere-0485
ENSEEUG00000001432.1
A0A1S2ZXW3
PRMT8
104
LLPS-Ere-0047
ENSEEUG00000000678.1
A0A1S2ZWV8
PSMA4
105
LLPS-Ere-0092
ENSEEUG00000003892.1
A0A1S2ZDM0
PSMB10
106
LLPS-Ere-0721
ENSEEUG00000015275.1
A0A1S3WL44
PSMB3
107
LLPS-Ere-0545
ENSEEUG00000005897.1
A0A1S3A7V3
PSMB4
108
LLPS-Ere-0272
ENSEEUG00000002083.1
A0A1S2ZMB2
PSMB6
109
LLPS-Ere-0080
ENSEEUG00000012177.1
A0A1S3AM14
PTCRA
110
LLPS-Ere-0745
ENSEEUG00000000348.1
A0A1S3ABF1
PTGIR
111
LLPS-Ere-0527
ENSEEUG00000005844.1
A0A1S3A2Z3
RACGAP1
112
LLPS-Ere-0680
ENSEEUG00000012301.1
A0A1S3WPY4
RGR
113
LLPS-Ere-0181
ENSEEUG00000011133.1
A0A1S3WUK6
RNF4
114
LLPS-Ere-0304
ENSEEUG00000013413.1
A0A1S3APJ4
RPL10
115
LLPS-Ere-0134
ENSEEUG00000011941.1
A0A1S2ZDZ4
RPL22L1
116
LLPS-Ere-0689
ENSEEUG00000012696.1
A0A1S3W286
RPL35
117
LLPS-Ere-0451
ENSEEUG00000004227.1
A0A1S3WU19
RPL39
118
LLPS-Ere-0133
ENSEEUG00000009169.1
A0A1S2ZM69
RPL7A
119
LLPS-Ere-0150
ENSEEUG00000003392.1
A0A1S3A9C9
RPS11
120
LLPS-Ere-0004
ENSEEUG00000008421.1
A0A1S3AIE5
RPS12
121
LLPS-Ere-0195
ENSEEUG00000013614.1
A0A1S3WNN1
RPS19
122
LLPS-Ere-0761
ENSEEUG00000004573.1
A0A1S2ZJN1
RPS21
123
LLPS-Ere-0205
ENSEEUG00000001849.1
A0A1S2ZG55
RPS23
124
LLPS-Ere-0867
ENSEEUG00000010022.1
A0A1S3ANG5
RPS29
125
LLPS-Ere-0044
ENSEEUG00000010552.1
A0A1S3A9V2
RPSA
126
LLPS-Ere-0401
ENSEEUG00000009755.1
A0A1S3A5X3
RRM2
127
LLPS-Ere-0415
ENSEEUG00000013719.1
A0A1S2ZZL3
RRS1
128
LLPS-Ere-0515
ENSEEUG00000013824.1
A0A1S3ADX5
RTN4R
129
LLPS-Ere-0086
ENSEEUG00000010791.1
A0A1S3A4U5
SARS
130
LLPS-Ere-0072
ENSEEUG00000003182.1
A0A1S2ZXK6
SCMH1
131
LLPS-Ere-0439
ENSEEUG00000011498.1
A0A1S3A551
SFRP2
132
LLPS-Ere-0601
ENSEEUG00000013051.1
A0A1S3AAE3
SLC25A39
133
LLPS-Ere-1012
ENSEEUG00000001558.1
A0A1S3AD17
SLC35C2
134
LLPS-Ere-0076
ENSEEUG00000015777.1
A0A1S3A984
SMN1
135
LLPS-Ere-1004
ENSEEUG00000009287.1
A0A1S2ZDK5
SMPD3
136
LLPS-Ere-0748
ENSEEUG00000013388.1
A0A1S2ZUK9
SNAP25
137
LLPS-Ere-0035
ENSEEUG00000015568.1
Q9TU67
SNRPB
138
LLPS-Ere-0340
ENSEEUG00000004545.1
A0A1S2ZS62
SNRPD1
139
LLPS-Ere-0906
ENSEEUG00000007914.1
A0A1S2ZH03
SPCS1
140
LLPS-Ere-0747
ENSEEUG00000000711.1
A0A1S3WPN9
SPG20
141
LLPS-Ere-1060
ENSEEUG00000012759.1
A0A1S3AMM8
SRP14
142
LLPS-Ere-1011
ENSEEUG00000001344.1
A0A1S3WFZ2
SRP9
143
LLPS-Ere-0692
ENSEEUG00000006120.1
A0A1S3ACF5
SST
144
LLPS-Ere-0017
ENSEEUG00000014716.1
A0A1S2ZHE0
SSTR3
145
LLPS-Ere-0628
ENSEEUG00000013161.1
A0A1S2ZK33
SUMO1
146
LLPS-Ere-0671
ENSEEUG00000014117.1
A0A1S2ZJH6
TARSL2
147
LLPS-Ere-0959
ENSEEUG00000009950.1
A0A1S3A8D5
TCAP
148
LLPS-Ere-0020
ENSEEUG00000011385.1
A0A1S2ZQG2
TOPORS
149
LLPS-Ere-0990
ENSEEUG00000011726.1
A0A1S3A268
TRAF3IP2
150
LLPS-Ere-0197
ENSEEUG00000014237.1
A0A1S2ZQS4
TRIB3
151
LLPS-Ere-0026
ENSEEUG00000005077.1
A0A1S2ZT09
TRIM71
152
LLPS-Ere-0997
ENSEEUG00000004844.1
A0A1S2ZKP6
TRMT12
153
LLPS-Ere-0369
ENSEEUG00000001692.1
A0A1S3AD24
TRPC7
154
LLPS-Ere-0095
ENSEEUG00000015333.1
A0A1S3WPM1
TWIST1
155
LLPS-Ere-0244
ENSEEUG00000010820.1
A0A1S3AJ18
UBE2D3
156
LLPS-Ere-0130
ENSEEUG00000012931.1
A0A1S3A9W3
USP10
157
LLPS-Ere-0888
ENSEEUG00000012858.1
A0A1S2ZFJ6
VEGFB
158
LLPS-Ere-0016
ENSEEUG00000000646.1
A0A1S2ZSS4
VPS4B
159
LLPS-Ere-0499
ENSEEUG00000007888.1
A0A1S2ZF29
VRK1
160
LLPS-Ere-0102
ENSEEUG00000002218.1
A0A1S3AGT5
WDR3
161
LLPS-Ere-0116
ENSEEUG00000004281.1
A0A1S2ZD65
WDR55
162
LLPS-Ere-0395
ENSEEUG00000010455.1
A0A1S2ZWG1
XYLT2
163
LLPS-Ere-0483
ENSEEUG00000007955.1
A0A1S2ZJA9
ZFAND1
164
LLPS-Ere-0088
ENSEEUG00000013571.1
A0A1S3WMX5
ZNRD1