Ciona savignyi      Regulator


※ Regulator introduction

    The LLPS of scaffold proteins and the stability of MLOs can be modulated by PTMs and other proteins (1-4). For example, arginine methylation of FUS by PRMT1 or PRMT8 reduces the LLPS of FUS, and both PRMTs were classified as PTM regulators. Also, Buchan et al. conducted a microscopy-based genetic screen of >4000 gene deletions in Saccharomyces cerevisiae, and identified 125 genes to be involved in regulating the stability and formation of P-bodies and/or stress granules (5). None of these proteins have been characterized to undergo LLPS, and here we classified all the 125 proteins as MLO regulators.

References
1. Vernon, R.M. and Forman-Kay, J.D. (2019) First-generation predictors of biological protein phase separation. Current opinion in structural biology 58, 88-96. PMID: 31252218
2. Wang, Z. and Zhang, H. (2019) Phase Separation, Transition, and Autophagic Degradation of Proteins in Development and Pathogenesis. Trends in cell biology, 29, 417-427. PMID: 30826216
3. Alberti, S., Gladfelter, A. and Mittag, T. (2019) Considerations and challenges in studying liquid-liquid phase separation and biomolecular condensates. Cell, 176, 419-434. PMID: 30682370
4. Bergeron-Sandoval, L.P., Safaee, N. and Michnick, S.W. (2016) Mechanisms and Consequences of Macromolecular Phase Separation. Cell, 165, 1067-1079. PMID: 27203111
5. Buchan, J.R., Kolaitis, R.M., Taylor, J.P. and Parker, R. (2013) Eukaryotic stress granules are cleared by autophagy and Cdc48/VCP function. Cell, 176, 419-434. PMID: 23791177


There are 363 genes.  Reviewed (0 or Unreviewed (363

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Cis-0005
ENSCSAVG00000011135.1
H2ZMZ3
2
LLPS-Cis-0009
ENSCSAVG00000008813.1
H2ZBS2
3
LLPS-Cis-0015
ENSCSAVG00000010235.1
H2ZIF9
4
LLPS-Cis-0020
ENSCSAVG00000003974.1
H2YMS7
5
LLPS-Cis-0025
ENSCSAVG00000010465.1
H2ZJK9
6
LLPS-Cis-0030
ENSCSAVG00000001105.1
H2Y989
7
LLPS-Cis-0031
ENSCSAVG00000002676.1
H2YGR1
8
LLPS-Cis-0032
ENSCSAVG00000004185.1
H2YNU3
9
LLPS-Cis-0034
ENSCSAVG00000011029.1
H2ZMF6
10
LLPS-Cis-0037
ENSCSAVG00000008584.1
H2ZAS5
11
LLPS-Cis-0038
ENSCSAVG00000008644.1
H2ZB16
12
LLPS-Cis-0040
ENSCSAVG00000003995.1
H2YMW3
13
LLPS-Cis-0048
ENSCSAVG00000006567.1
H2Z0W2
14
LLPS-Cis-0050
ENSCSAVG00000010737.1
H2ZKZ6
15
LLPS-Cis-0051
ENSCSAVG00000008411.1
H2Z9U1
16
LLPS-Cis-0053
ENSCSAVG00000008160.1
H2Z8K6
17
LLPS-Cis-0065
ENSCSAVG00000009758.1
H2ZG82
18
LLPS-Cis-0066
ENSCSAVG00000003467.1
H2YKG4
19
LLPS-Cis-0071
ENSCSAVG00000000639.1
H2Y745
20
LLPS-Cis-0079
ENSCSAVG00000006009.1
H2YXW9
21
LLPS-Cis-0084
ENSCSAVG00000002214.1
H2YEI9
22
LLPS-Cis-0095
ENSCSAVG00000001253.1
H2Y9Y7
23
LLPS-Cis-0096
ENSCSAVG00000001660.1
H2YBU6
24
LLPS-Cis-0109
ENSCSAVG00000004895.1
H2YSB3
25
LLPS-Cis-0112
ENSCSAVG00000001572.1
H2YBF8
26
LLPS-Cis-0115
ENSCSAVG00000003566.1
H2YKY0
27
LLPS-Cis-0131
ENSCSAVG00000006205.1
H2YYZ2
28
LLPS-Cis-0137
ENSCSAVG00000004341.1
H2YPL2
29
LLPS-Cis-0145
ENSCSAVG00000006453.1
H2Z0B4
30
LLPS-Cis-0159
ENSCSAVG00000004113.1
H2YNH8
31
LLPS-Cis-0163
ENSCSAVG00000003360.1
H2YJZ3
32
LLPS-Cis-0169
ENSCSAVG00000005823.1
H2YX45
33
LLPS-Cis-0172
ENSCSAVG00000007751.1
H2Z6I8
34
LLPS-Cis-0176
ENSCSAVG00000004751.1
H2YRK8
35
LLPS-Cis-0180
ENSCSAVG00000009147.1
H2ZDB1
36
LLPS-Cis-0183
ENSCSAVG00000007667.1
H2Z633
37
LLPS-Cis-0185
ENSCSAVG00000002530.1
H2YG29
38
LLPS-Cis-0186
ENSCSAVG00000005368.1
H2YUS7
39
LLPS-Cis-0189
ENSCSAVG00000000263.1
H2Y552
40
LLPS-Cis-0192
ENSCSAVG00000001120.1
H2Y9C5
41
LLPS-Cis-0198
ENSCSAVG00000005752.1
H2YWT9
42
LLPS-Cis-0199
ENSCSAVG00000006435.1
H2Z072
43
LLPS-Cis-0200
ENSCSAVG00000007269.1
H2Z448
44
LLPS-Cis-0201
ENSCSAVG00000008429.1
H2Z9X8
45
LLPS-Cis-0205
ENSCSAVG00000010081.1
H2ZHR6
46
LLPS-Cis-0207
ENSCSAVG00000007813.1
H2Z6U8
47
LLPS-Cis-0208
ENSCSAVG00000006600.1
H2Z125
48
LLPS-Cis-0212
ENSCSAVG00000006653.1
H2Z1B4
49
LLPS-Cis-0214
ENSCSAVG00000010259.1
H2ZIK3
50
LLPS-Cis-0215
ENSCSAVG00000007825.1
H2Z6X0
51
LLPS-Cis-0224
ENSCSAVG00000008661.1
H2ZB42
52
LLPS-Cis-0231
ENSCSAVG00000004337.1
H2YPK3
53
LLPS-Cis-0232
ENSCSAVG00000002329.1
H2YF36
54
LLPS-Cis-0233
ENSCSAVG00000009695.1
H2ZFW7
55
LLPS-Cis-0240
ENSCSAVG00000009791.1
H2ZGE6
56
LLPS-Cis-0245
ENSCSAVG00000004307.1
H2YPE7
57
LLPS-Cis-0246
ENSCSAVG00000008261.1
H2Z921
58
LLPS-Cis-0253
ENSCSAVG00000000496.1
H2Y6C0
59
LLPS-Cis-0257
ENSCSAVG00000000753.1
H2Y7Q7
60
LLPS-Cis-0260
ENSCSAVG00000008038.1
H2Z7Z8
61
LLPS-Cis-0261
ENSCSAVG00000001875.1
H2YCV5
62
LLPS-Cis-0264
ENSCSAVG00000006042.1
H2YY41
63
LLPS-Cis-0266
ENSCSAVG00000006133.1
H2YYJ1
64
LLPS-Cis-0274
ENSCSAVG00000008369.1
H2Z9M2
65
LLPS-Cis-0280
ENSCSAVG00000004327.1
H2YPI2
66
LLPS-Cis-0285
ENSCSAVG00000009360.1
H2ZE95
67
LLPS-Cis-0287
ENSCSAVG00000001380.1
H2YAK1
68
LLPS-Cis-0290
ENSCSAVG00000002430.1
H2YFN5
69
LLPS-Cis-0293
ENSCSAVG00000009653.1
H2ZFP0
70
LLPS-Cis-0296
ENSCSAVG00000003061.1
H2YIH6
71
LLPS-Cis-0299
ENSCSAVG00000007835.1
H2Z6Z6
72
LLPS-Cis-0303
ENSCSAVG00000006308.1
H2YZJ4
73
LLPS-Cis-0304
ENSCSAVG00000006424.1
H2Z055
74
LLPS-Cis-0305
ENSCSAVG00000005742.1
H2YWS2
75
LLPS-Cis-0307
ENSCSAVG00000010047.1
H2ZHM3
76
LLPS-Cis-0309
ENSCSAVG00000007423.1
H2Z4Y3
77
LLPS-Cis-0315
ENSCSAVG00000000560.1
H2Y6P4
78
LLPS-Cis-0323
ENSCSAVG00000007683.1
H2Z667
79
LLPS-Cis-0345
ENSCSAVG00000000752.1
H2Y7Q1
80
LLPS-Cis-0354
ENSCSAVG00000005730.1
H2YWQ4
81
LLPS-Cis-0356
ENSCSAVG00000010137.1
H2ZI18
82
LLPS-Cis-0367
ENSCSAVG00000008659.1
H2ZB40
83
LLPS-Cis-0376
ENSCSAVG00000002162.1
H2YEA3
84
LLPS-Cis-0377
ENSCSAVG00000010725.1
H2ZKX2
85
LLPS-Cis-0383
ENSCSAVG00000007394.1
H2Z4T3
86
LLPS-Cis-0386
ENSCSAVG00000004331.1
H2YPJ5
87
LLPS-Cis-0392
ENSCSAVG00000010109.1
H2ZHW0
88
LLPS-Cis-0394
ENSCSAVG00000000030.1
H2Y421
89
LLPS-Cis-0395
ENSCSAVG00000001244.1
H2Y9W9
90
LLPS-Cis-0397
ENSCSAVG00000004628.1
H2YQY6
91
LLPS-Cis-0403
ENSCSAVG00000000415.1
H2Y5Z0
92
LLPS-Cis-0408
ENSCSAVG00000009295.1
H2ZDZ7
93
LLPS-Cis-0418
ENSCSAVG00000001078.1
H2Y944
94
LLPS-Cis-0428
ENSCSAVG00000002519.1
H2YG16
95
LLPS-Cis-0430
ENSCSAVG00000000818.1
H2Y7Z2
96
LLPS-Cis-0432
ENSCSAVG00000008729.1
H2ZBE6
97
LLPS-Cis-0433
ENSCSAVG00000005485.1
H2YVE0
98
LLPS-Cis-0439
ENSCSAVG00000008623.1
H2ZAY0
99
LLPS-Cis-0440
ENSCSAVG00000000129.1
H2Y4I7
100
LLPS-Cis-0441
ENSCSAVG00000004784.1
H2YRS5
101
LLPS-Cis-0442
ENSCSAVG00000001666.1
H2YBV7
102
LLPS-Cis-0446
ENSCSAVG00000005685.1
H2YWH4
103
LLPS-Cis-0449
ENSCSAVG00000000586.1
H2Y6W0
104
LLPS-Cis-0455
ENSCSAVG00000005497.1
H2YVH1
105
LLPS-Cis-0457
ENSCSAVG00000006784.1
H2Z1W0
106
LLPS-Cis-0459
ENSCSAVG00000005816.1
H2YX33
107
LLPS-Cis-0461
ENSCSAVG00000000118.1
H2Y4F4
108
LLPS-Cis-0462
ENSCSAVG00000003985.1
H2YMU5
109
LLPS-Cis-0463
ENSCSAVG00000000219.1
H2Y4Y9
110
LLPS-Cis-0471
ENSCSAVG00000009584.1
H2ZFC2
111
LLPS-Cis-0472
ENSCSAVG00000007282.1
H2Z466
112
LLPS-Cis-0475
ENSCSAVG00000009406.1
H2ZEG5
113
LLPS-Cis-0476
ENSCSAVG00000008899.1
H2ZC59
114
LLPS-Cis-0482
ENSCSAVG00000003855.1
H2YM90
115
LLPS-Cis-0494
ENSCSAVG00000006846.1
H2Z278
116
LLPS-Cis-0497
ENSCSAVG00000007644.1
H2Z604
117
LLPS-Cis-0499
ENSCSAVG00000001254.1
H2Y9Y9
118
LLPS-Cis-0505
ENSCSAVG00000000721.1
H2Y7J5
119
LLPS-Cis-0512
ENSCSAVG00000001450.1
H2YAV8
120
LLPS-Cis-0515
ENSCSAVG00000003044.1
H2YIE6
121
LLPS-Cis-0519
ENSCSAVG00000007330.1
H2Z4H2
122
LLPS-Cis-0521
ENSCSAVG00000000591.1
H2Y6W8
123
LLPS-Cis-0522
ENSCSAVG00000004949.1
H2YSL5
124
LLPS-Cis-0523
ENSCSAVG00000003185.1
H2YJ38
125
LLPS-Cis-0528
ENSCSAVG00000006382.1
H2YZY5
126
LLPS-Cis-0529
ENSCSAVG00000011469.1
H2ZPP6
127
LLPS-Cis-0530
ENSCSAVG00000011550.1
H2ZQ34
128
LLPS-Cis-0531
ENSCSAVG00000011467.1
H2ZPN6
129
LLPS-Cis-0533
ENSCSAVG00000009223.1
H2ZDN3
130
LLPS-Cis-0538
ENSCSAVG00000002071.1
H2YDT9
131
LLPS-Cis-0543
ENSCSAVG00000000910.1
H2Y8E1
132
LLPS-Cis-0545
ENSCSAVG00000004888.1
H2YSA5
133
LLPS-Cis-0566
ENSCSAVG00000011587.1
H2ZQ90
134
LLPS-Cis-0567
ENSCSAVG00000008882.1
H2ZC36
135
LLPS-Cis-0570
ENSCSAVG00000006248.1
H2YZ53
136
LLPS-Cis-0574
ENSCSAVG00000007095.1
H2Z399
137
LLPS-Cis-0585
ENSCSAVG00000011415.1
H2ZPF6
138
LLPS-Cis-0586
ENSCSAVG00000007684.1
H2Z668
139
LLPS-Cis-0587
ENSCSAVG00000011193.1
H2ZNA9
140
LLPS-Cis-0589
ENSCSAVG00000006087.1
H2YYC5
141
LLPS-Cis-0595
ENSCSAVG00000002375.1
H2YFC0
142
LLPS-Cis-0602
ENSCSAVG00000011246.1
H2ZNI0
143
LLPS-Cis-0604
ENSCSAVG00000011249.1
H2ZNI4
144
LLPS-Cis-0605
ENSCSAVG00000002894.1
H2YHR2
145
LLPS-Cis-0613
ENSCSAVG00000009069.1
H2ZCY4
146
LLPS-Cis-0634
ENSCSAVG00000006933.1
H2Z2K8
147
LLPS-Cis-0637
ENSCSAVG00000011809.1
H2ZRA6
148
LLPS-Cis-0640
ENSCSAVG00000004997.1
H2YSV5
149
LLPS-Cis-0647
ENSCSAVG00000010396.1
H2ZJ94
150
LLPS-Cis-0649
ENSCSAVG00000006170.1
H2YYR4
151
LLPS-Cis-0659
ENSCSAVG00000010445.1
H2ZJI2
152
LLPS-Cis-0660
ENSCSAVG00000008970.1
H2ZCG6
153
LLPS-Cis-0671
ENSCSAVG00000003260.1
H2YJF6
154
LLPS-Cis-0681
ENSCSAVG00000008505.1
H2ZAB6
155
LLPS-Cis-0685
ENSCSAVG00000006349.1
H2YZR2
156
LLPS-Cis-0689
ENSCSAVG00000008807.1
H2ZBR1
157
LLPS-Cis-0690
ENSCSAVG00000005216.1
H2YTY6
158
LLPS-Cis-0697
ENSCSAVG00000003045.1
H2YIE8
159
LLPS-Cis-0698
ENSCSAVG00000009630.1
H2ZFJ4
160
LLPS-Cis-0701
ENSCSAVG00000006429.1
H2Z065
161
LLPS-Cis-0703
ENSCSAVG00000008740.1
H2ZBG2
162
LLPS-Cis-0704
ENSCSAVG00000008586.1
H2ZAS8
163
LLPS-Cis-0710
ENSCSAVG00000005463.1
H2YVA2
164
LLPS-Cis-0726
ENSCSAVG00000010007.1
H2ZHE4
165
LLPS-Cis-0727
ENSCSAVG00000010787.1
H2ZLA5
166
LLPS-Cis-0728
ENSCSAVG00000011317.1
H2ZNV9
167
LLPS-Cis-0730
ENSCSAVG00000010570.1
H2ZK43
168
LLPS-Cis-0733
ENSCSAVG00000007580.1
H2Z5P2
169
LLPS-Cis-0735
ENSCSAVG00000008691.1
H2ZB85
170
LLPS-Cis-0746
ENSCSAVG00000007536.1
H2Z5G6
171
LLPS-Cis-0751
ENSCSAVG00000002738.1
H2YGZ5
172
LLPS-Cis-0757
ENSCSAVG00000002115.1
H2YE11
173
LLPS-Cis-0764
ENSCSAVG00000010000.1
H2ZHD5
174
LLPS-Cis-0772
ENSCSAVG00000010981.1
H2ZM70
175
LLPS-Cis-0776
ENSCSAVG00000009626.1
H2ZFJ0
176
LLPS-Cis-0783
ENSCSAVG00000002146.1
H2YE70
177
LLPS-Cis-0785
ENSCSAVG00000007982.1
H2Z7P9
178
LLPS-Cis-0787
ENSCSAVG00000004985.1
H2YSS4
179
LLPS-Cis-0791
ENSCSAVG00000001251.1
H2Y9Y5
180
LLPS-Cis-0795
ENSCSAVG00000007525.1
H2Z5E7
181
LLPS-Cis-0802
ENSCSAVG00000001747.1
H2YC83
182
LLPS-Cis-0808
ENSCSAVG00000002230.1
H2YEL1
183
LLPS-Cis-0809
ENSCSAVG00000010891.1
H2ZLT0
184
LLPS-Cis-0811
ENSCSAVG00000003893.1
H2YMF3
185
LLPS-Cis-0813
ENSCSAVG00000009685.1
H2ZFU8
186
LLPS-Cis-0814
ENSCSAVG00000007729.1
H2Z6G1
187
LLPS-Cis-0822
ENSCSAVG00000002001.1
H2YDH1
188
LLPS-Cis-0833
ENSCSAVG00000004857.1
H2YS57
189
LLPS-Cis-0834
ENSCSAVG00000010170.1
H2ZI58
190
LLPS-Cis-0839
ENSCSAVG00000003542.1
H2YKU5
191
LLPS-Cis-0841
ENSCSAVG00000008917.1
H2ZC91
192
LLPS-Cis-0844
ENSCSAVG00000003039.1
H2YID8
193
LLPS-Cis-0846
ENSCSAVG00000001742.1
H2YC70
194
LLPS-Cis-0847
ENSCSAVG00000003960.1
H2YMQ4
195
LLPS-Cis-0849
ENSCSAVG00000010721.1
H2ZKW7
196
LLPS-Cis-0850
ENSCSAVG00000002928.1
H2YHX0
197
LLPS-Cis-0857
ENSCSAVG00000000179.1
H2Y4S5
198
LLPS-Cis-0867
ENSCSAVG00000007424.1
H2Z4Y5
199
LLPS-Cis-0869
ENSCSAVG00000001363.1
H2YAI0
200
LLPS-Cis-0873
ENSCSAVG00000011359.1
H2ZP31
201
LLPS-Cis-0874
ENSCSAVG00000004578.1
H2YQQ0
202
LLPS-Cis-0877
ENSCSAVG00000002293.1
H2YEY1
203
LLPS-Cis-0883
ENSCSAVG00000007545.1
H2Z5J0
204
LLPS-Cis-0885
ENSCSAVG00000001811.1
H2YCK7
205
LLPS-Cis-0886
ENSCSAVG00000001973.1
H2YDB0
206
LLPS-Cis-0896
ENSCSAVG00000004832.1
H2YS08
207
LLPS-Cis-0900
ENSCSAVG00000011819.1
H2ZRB8
208
LLPS-Cis-0901
ENSCSAVG00000000921.1
H2Y8F5
209
LLPS-Cis-0908
ENSCSAVG00000004128.1
H2YNL1
210
LLPS-Cis-0910
ENSCSAVG00000005500.1
H2YVH5
211
LLPS-Cis-0918
ENSCSAVG00000002414.1
H2YFJ8
212
LLPS-Cis-0921
ENSCSAVG00000001404.1
H2YAQ4
213
LLPS-Cis-0923
ENSCSAVG00000009125.1
H2ZD75
214
LLPS-Cis-0927
ENSCSAVG00000002670.1
H2YGQ3
215
LLPS-Cis-0937
ENSCSAVG00000008781.1
H2ZBN1
216
LLPS-Cis-0938
ENSCSAVG00000005956.1
H2YXP3
217
LLPS-Cis-0946
ENSCSAVG00000008100.1
H2Z899
218
LLPS-Cis-0949
ENSCSAVG00000009472.1
H2ZES1
219
LLPS-Cis-0950
ENSCSAVG00000008390.1
H2Z9R5
220
LLPS-Cis-0953
ENSCSAVG00000009761.1
H2ZG86
221
LLPS-Cis-0975
ENSCSAVG00000007153.1
H2Z3J5
222
LLPS-Cis-0979
ENSCSAVG00000006915.1
H2Z2H0
223
LLPS-Cis-0983
ENSCSAVG00000010546.1
H2ZK04
224
LLPS-Cis-0987
ENSCSAVG00000009944.1
H2ZH45
225
LLPS-Cis-0995
ENSCSAVG00000003607.1
H2YL40
226
LLPS-Cis-1002
ENSCSAVG00000007753.1
H2Z6J2
227
LLPS-Cis-1010
ENSCSAVG00000009873.1
H2ZGR3
228
LLPS-Cis-1011
ENSCSAVG00000009265.1
H2ZDV8
229
LLPS-Cis-1018
ENSCSAVG00000011078.1
H2ZMN5
230
LLPS-Cis-1035
ENSCSAVG00000010485.1
H2ZJP8
231
LLPS-Cis-1036
ENSCSAVG00000009726.1
H2ZG24
232
LLPS-Cis-1038
ENSCSAVG00000011748.1
H2ZQZ7
233
LLPS-Cis-1043
ENSCSAVG00000003537.1
H2YKS5
234
LLPS-Cis-1055
ENSCSAVG00000006500.1
H2Z0K5
235
LLPS-Cis-1059
ENSCSAVG00000000289.1
H2Y5A9
236
LLPS-Cis-1062
ENSCSAVG00000000269.1
H2Y569
237
LLPS-Cis-1063
ENSCSAVG00000006744.1
H2Z1Q7
238
LLPS-Cis-1072
ENSCSAVG00000009952.1
H2ZH55
239
LLPS-Cis-1083
ENSCSAVG00000006290.1
H2YZG4
240
LLPS-Cis-1095
ENSCSAVG00000008061.1
H2Z832
241
LLPS-Cis-1101
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