Ciona intestinalis      Regulator


※ Regulator introduction

    The LLPS of scaffold proteins and the stability of MLOs can be modulated by PTMs and other proteins (1-4). For example, arginine methylation of FUS by PRMT1 or PRMT8 reduces the LLPS of FUS, and both PRMTs were classified as PTM regulators. Also, Buchan et al. conducted a microscopy-based genetic screen of >4000 gene deletions in Saccharomyces cerevisiae, and identified 125 genes to be involved in regulating the stability and formation of P-bodies and/or stress granules (5). None of these proteins have been characterized to undergo LLPS, and here we classified all the 125 proteins as MLO regulators.

References
1. Vernon, R.M. and Forman-Kay, J.D. (2019) First-generation predictors of biological protein phase separation. Current opinion in structural biology 58, 88-96. PMID: 31252218
2. Wang, Z. and Zhang, H. (2019) Phase Separation, Transition, and Autophagic Degradation of Proteins in Development and Pathogenesis. Trends in cell biology, 29, 417-427. PMID: 30826216
3. Alberti, S., Gladfelter, A. and Mittag, T. (2019) Considerations and challenges in studying liquid-liquid phase separation and biomolecular condensates. Cell, 176, 419-434. PMID: 30682370
4. Bergeron-Sandoval, L.P., Safaee, N. and Michnick, S.W. (2016) Mechanisms and Consequences of Macromolecular Phase Separation. Cell, 165, 1067-1079. PMID: 27203111
5. Buchan, J.R., Kolaitis, R.M., Taylor, J.P. and Parker, R. (2013) Eukaryotic stress granules are cleared by autophagy and Cdc48/VCP function. Cell, 176, 419-434. PMID: 23791177


There are 429 genes.  Reviewed (0 or Unreviewed (429

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Cii-0008
ENSCING00000001081.3
F7B0F3
2
LLPS-Cii-0012
ENSCING00000021893.1
H2XM12
3
LLPS-Cii-0032
ENSCING00000006069.3
F6YXI8
4
LLPS-Cii-0046
ENSCING00000005419.3
F6YQR4
5
LLPS-Cii-0047
ENSCING00000022397.1
H2XM91
6
LLPS-Cii-0072
ENSCING00000003281.3
F6WNH2
7
LLPS-Cii-0076
ENSCING00000022336.1
H2XSM0
8
LLPS-Cii-0088
ENSCING00000019359.1
H2XVJ2
9
LLPS-Cii-0093
ENSCING00000002796.3
F6XMP8
10
LLPS-Cii-0104
ENSCING00000004760.3
F6PMM3
11
LLPS-Cii-0108
ENSCING00000008243.3
H2XVW1
12
LLPS-Cii-0120
ENSCING00000003181.3
F6QDE3
13
LLPS-Cii-0126
ENSCING00000023383.1
H2Y1I5
14
LLPS-Cii-0150
ENSCING00000000852.3
F6R0P0
15
LLPS-Cii-0159
ENSCING00000022087.1
H2Y3Q2
16
LLPS-Cii-0161
ENSCING00000003598.3
F6UXR3
17
LLPS-Cii-0174
ENSCING00000010738.3
F6S4U2
18
LLPS-Cii-0177
ENSCING00000003627.3
F6TJJ7
19
LLPS-Cii-0178
ENSCING00000019565.1
H2XT24
20
LLPS-Cii-0180
ENSCING00000014454.2
F6YAV6
21
LLPS-Cii-0186
ENSCING00000018165.1
H2Y1Y8
22
LLPS-Cii-0191
ENSCING00000001858.3
F6T6Y7
23
LLPS-Cii-0195
ENSCING00000005471.3
F6U602
24
LLPS-Cii-0197
ENSCING00000004337.3
F7BML6
25
LLPS-Cii-0204
ENSCING00000007817.3
F6WTL7
26
LLPS-Cii-0220
ENSCING00000009087.3
F6Q9K0
27
LLPS-Cii-0225
ENSCING00000001153.3
F6YBA5
28
LLPS-Cii-0228
ENSCING00000005068.3
L7N0S3
29
LLPS-Cii-0231
ENSCING00000019102.1
H2XLR4
30
LLPS-Cii-0241
ENSCING00000001056.3
F6UNM5
31
LLPS-Cii-0250
ENSCING00000001226.3
F6ZK41
32
LLPS-Cii-0256
ENSCING00000002715.3
F6UDJ0
33
LLPS-Cii-0257
ENSCING00000008616.3
F6T2A6
34
LLPS-Cii-0261
ENSCING00000001964.3
F6SID0
35
LLPS-Cii-0282
ENSCING00000017987.1
H2XUU5
36
LLPS-Cii-0287
ENSCING00000008990.3
F6PKJ4
37
LLPS-Cii-0302
ENSCING00000007757.3
F6XTN6
38
LLPS-Cii-0316
ENSCING00000007043.3
F6ZCE0
39
LLPS-Cii-0335
ENSCING00000000418.3
F7BL51
40
LLPS-Cii-0339
ENSCING00000002700.3
F6UE33
41
LLPS-Cii-0342
ENSCING00000002321.2
F6PP61
42
LLPS-Cii-0359
ENSCING00000004719.3
H2XU65
43
LLPS-Cii-0363
ENSCING00000004820.3
F6R8V3
44
LLPS-Cii-0367
ENSCING00000005998.3
F6V4K8
45
LLPS-Cii-0376
ENSCING00000020877.1
H2XNX7
46
LLPS-Cii-0378
ENSCING00000003046.3
F6QST8
47
LLPS-Cii-0382
ENSCING00000006038.3
F7BLS5
48
LLPS-Cii-0383
ENSCING00000002129.3
F6WRF3
49
LLPS-Cii-0386
ENSCING00000008741.3
F6TMD1
50
LLPS-Cii-0390
ENSCING00000019985.1
H2XWE4
51
LLPS-Cii-0396
ENSCING00000003563.3
F6YSX7
52
LLPS-Cii-0402
ENSCING00000016136.2
F6VY76
53
LLPS-Cii-0405
ENSCING00000004687.3
F6QNL7
54
LLPS-Cii-0421
ENSCING00000007049.2
F6ZBX8
55
LLPS-Cii-0431
ENSCING00000022911.1
H2XRG4
56
LLPS-Cii-0442
ENSCING00000022964.1
H2XUJ7
57
LLPS-Cii-0445
ENSCING00000018191.1
H2Y0Q6
58
LLPS-Cii-0448
ENSCING00000017967.1
H2XMB6
59
LLPS-Cii-0450
ENSCING00000000337.3
F6QQ49
60
LLPS-Cii-0455
ENSCING00000013272.2
F6YMZ5
61
LLPS-Cii-0459
ENSCING00000003421.3
F6XKP0
62
LLPS-Cii-0461
ENSCING00000015908.2
F6YZE6
63
LLPS-Cii-0491
ENSCING00000007281.3
F6SUU2
64
LLPS-Cii-0492
ENSCING00000012507.2
F7BEA7
65
LLPS-Cii-0522
ENSCING00000004681.3
F6QSR3
66
LLPS-Cii-0529
ENSCING00000007310.3
F6YK55
67
LLPS-Cii-0533
ENSCING00000000347.3
F6WDZ2
68
LLPS-Cii-0535
ENSCING00000016816.2
F6RZE8
69
LLPS-Cii-0536
ENSCING00000024984.1
H2Y1I9
70
LLPS-Cii-0543
ENSCING00000002054.3
F7BDH1
71
LLPS-Cii-0557
ENSCING00000014926.2
F6W6L5
72
LLPS-Cii-0564
ENSCING00000024100.1
H2XZL8
73
LLPS-Cii-0565
ENSCING00000004452.3
F6XDT3
74
LLPS-Cii-0573
ENSCING00000008865.3
F6R2U8
75
LLPS-Cii-0600
ENSCING00000008201.3
F6PJL4
76
LLPS-Cii-0618
ENSCING00000003363.2
F7BA18
77
LLPS-Cii-0631
ENSCING00000001695.3
F6UJD6
78
LLPS-Cii-0652
ENSCING00000004599.3
F6U2M6
79
LLPS-Cii-0656
ENSCING00000006371.3
F6RKM9
80
LLPS-Cii-0663
ENSCING00000021535.1
H2XSE6
81
LLPS-Cii-0693
ENSCING00000008994.3
F6PKD1
82
LLPS-Cii-0704
ENSCING00000025069.1
H2XWZ3
83
LLPS-Cii-0720
ENSCING00000001460.3
F6VK85
84
LLPS-Cii-0738
ENSCING00000007816.3
F6XC92
85
LLPS-Cii-0744
ENSCING00000021229.1
Q1RLC9
86
LLPS-Cii-0752
ENSCING00000007679.3
F6T718
87
LLPS-Cii-0759
ENSCING00000013483.2
F7BKI5
88
LLPS-Cii-0761
ENSCING00000008187.3
F6PNA9
89
LLPS-Cii-0763
ENSCING00000021300.1
H2XN24
90
LLPS-Cii-0770
ENSCING00000023900.1
H2Y3C6
91
LLPS-Cii-0776
ENSCING00000022358.1
H2XTB0
92
LLPS-Cii-0781
ENSCING00000007079.3
F6W9I8
93
LLPS-Cii-0802
ENSCING00000024577.1
H2XTN0
94
LLPS-Cii-0816
ENSCING00000004330.3
F7AMW5
95
LLPS-Cii-0824
ENSCING00000007075.3
F6WVX7
96
LLPS-Cii-0827
ENSCING00000020511.1
H2XUS4
97
LLPS-Cii-0829
ENSCING00000023252.1
H2Y1D7
98
LLPS-Cii-0830
ENSCING00000022926.1
H2XNN6
99
LLPS-Cii-0846
ENSCING00000020302.1
H2XYL3
100
LLPS-Cii-0853
ENSCING00000009065.3
F6R213
101
LLPS-Cii-0857
ENSCING00000008100.3
F6UHM2
102
LLPS-Cii-0862
ENSCING00000001603.3
F6RZS3
103
LLPS-Cii-0879
ENSCING00000004821.3
F6R982
104
LLPS-Cii-0888
ENSCING00000021494.1
H2XVY7
105
LLPS-Cii-0914
ENSCING00000005502.3
F7BD94
106
LLPS-Cii-0921
ENSCING00000008937.4
F6Q9P9
107
LLPS-Cii-0934
ENSCING00000001048.3
F6UNP2
108
LLPS-Cii-0935
ENSCING00000015552.2
F6SLD6
109
LLPS-Cii-0975
ENSCING00000009356.3
F6XKY1
110
LLPS-Cii-0979
ENSCING00000000153.3
F6Z5W5
111
LLPS-Cii-0988
ENSCING00000005181.3
F6RXW9
112
LLPS-Cii-0999
ENSCING00000003584.3
F6Y886
113
LLPS-Cii-1007
ENSCING00000019510.1
H2Y089
114
LLPS-Cii-1009
ENSCING00000008272.3
F6QTW3
115
LLPS-Cii-1022
ENSCING00000004189.3
F7A6C5
116
LLPS-Cii-1036
ENSCING00000020658.1
H2Y288
117
LLPS-Cii-1046
ENSCING00000004199.3
F7B4V3
118
LLPS-Cii-1048
ENSCING00000009149.3
F7BBD1
119
LLPS-Cii-1066
ENSCING00000005414.3
F6Z998
120
LLPS-Cii-1068
ENSCING00000011388.2
F6TJB5
121
LLPS-Cii-1069
ENSCING00000007700.3
F6RW91
122
LLPS-Cii-1079
ENSCING00000009307.3
F7A5V7
123
LLPS-Cii-1080
ENSCING00000019779.1
H2XU69
124
LLPS-Cii-1081
ENSCING00000020450.1
H2XKP3
125
LLPS-Cii-1086
ENSCING00000021615.1
F6UNS0
126
LLPS-Cii-1087
ENSCING00000015091.2
F6TQ55
127
LLPS-Cii-1093
ENSCING00000019148.1
F6TAK8
128
LLPS-Cii-1098
ENSCING00000005697.3
F6WQJ1
129
LLPS-Cii-1102
ENSCING00000007963.3
F6Z833
130
LLPS-Cii-1114
ENSCING00000017652.2
F6WZ37
131
LLPS-Cii-1128
ENSCING00000003982.3
F6WJQ0
132
LLPS-Cii-1144
ENSCING00000003483.3
F6UA38
133
LLPS-Cii-1153
ENSCING00000024819.1
H2XM20
134
LLPS-Cii-1158
ENSCING00000018434.1
H2XQ81
135
LLPS-Cii-1162
ENSCING00000024830.1
H2XQ34
136
LLPS-Cii-1163
ENSCING00000017452.2
137
LLPS-Cii-1179
ENSCING00000004543.3
F6ZQQ7
138
LLPS-Cii-1187
ENSCING00000013683.2
F6PXD8
139
LLPS-Cii-1193
ENSCING00000010053.3
F6QH43
140
LLPS-Cii-1203
ENSCING00000007379.3
F6UM75
141
LLPS-Cii-1204
ENSCING00000007480.3
F6UJL1
142
LLPS-Cii-1206
ENSCING00000002729.3
F6TQ12
143
LLPS-Cii-1214
ENSCING00000023847.1
H2XVC3
144
LLPS-Cii-1225
ENSCING00000012896.2
F6PTJ9
145
LLPS-Cii-1229
ENSCING00000009332.3
F6Z491
146
LLPS-Cii-1236
ENSCING00000011663.2
F6X986
147
LLPS-Cii-1243
ENSCING00000004841.3
F6TZ29
148
LLPS-Cii-1249
ENSCING00000010411.3
F7B2Q1
149
LLPS-Cii-1255
ENSCING00000024005.1
H2XL75
150
LLPS-Cii-1265
ENSCING00000001952.3
F6XTZ6
151
LLPS-Cii-1289
ENSCING00000014109.2
F6TCR0
152
LLPS-Cii-1296
ENSCING00000006539.3
F6RNR5
153
LLPS-Cii-1299
ENSCING00000022892.1
F6ZH30
154
LLPS-Cii-1306
ENSCING00000005983.3
F6V5U6
155
LLPS-Cii-1307
ENSCING00000019384.1
H2XXR3
156
LLPS-Cii-1309
ENSCING00000000245.3
F6SGU7
157
LLPS-Cii-1313
ENSCING00000019661.1
H2XKL0
158
LLPS-Cii-1323
ENSCING00000003661.3
F7AX62
159
LLPS-Cii-1337
ENSCING00000006677.3
H2XX78
160
LLPS-Cii-1353
ENSCING00000005189.3
F6RWU5
161
LLPS-Cii-1354
ENSCING00000006364.3
F6RRI2
162
LLPS-Cii-1356
ENSCING00000007543.2
F6T957
163
LLPS-Cii-1362
ENSCING00000004845.3
F6TYS5
164
LLPS-Cii-1363
ENSCING00000002850.3
F6T0F1
165
LLPS-Cii-1369
ENSCING00000005927.3
F6ZHD7
166
LLPS-Cii-1428
ENSCING00000009762.3
F6ZTJ9
167
LLPS-Cii-1429
ENSCING00000021695.1
H2XZY0
168
LLPS-Cii-1436
ENSCING00000007682.3
F6SJH8
169
LLPS-Cii-1458
ENSCING00000007364.3
F6VCT2
170
LLPS-Cii-1470
ENSCING00000019849.1
F6YGY7
171
LLPS-Cii-1476
ENSCING00000003439.3
F6WYC4
172
LLPS-Cii-1497
ENSCING00000022791.1
F6X972
173
LLPS-Cii-1499
ENSCING00000018829.1
H2XXI7
174
LLPS-Cii-1500
ENSCING00000018514.1
H2XSU1
175
LLPS-Cii-1514
ENSCING00000013284.2
F7BLL2
176
LLPS-Cii-1528
ENSCING00000010126.3
F6ZX46
177
LLPS-Cii-1537
ENSCING00000014447.2
F6YB51
178
LLPS-Cii-1543
ENSCING00000021983.1
H2XM76
179
LLPS-Cii-1548
ENSCING00000007729.3
F6ZID3
180
LLPS-Cii-1558
ENSCING00000000514.3
F6V136
181
LLPS-Cii-1565
ENSCING00000004310.3
F6SI05
182
LLPS-Cii-1585
ENSCING00000000186.3
F6WFN8
183
LLPS-Cii-1628
ENSCING00000003974.3
F6YU56
184
LLPS-Cii-1630
ENSCING00000003725.3
F6W8D0
185
LLPS-Cii-1654
ENSCING00000001452.3
F6VL41
186
LLPS-Cii-1661
ENSCING00000004590.3
F6WPA9
187
LLPS-Cii-1663
ENSCING00000023898.1
H2Y0V6
188
LLPS-Cii-1673
ENSCING00000009059.3
F7BH52
189
LLPS-Cii-1718
ENSCING00000003630.3
F6TJY9
190
LLPS-Cii-1738
ENSCING00000005429.3
F6VII8
191
LLPS-Cii-1751
ENSCING00000006908.3
F6YAC3
192
LLPS-Cii-1759
ENSCING00000014465.2
F6YAH3
193
LLPS-Cii-1766
ENSCING00000008588.3
F6UD40
194
LLPS-Cii-1770
ENSCING00000002444.3
F6QNQ9
195
LLPS-Cii-1773
ENSCING00000007440.3
F7AP04
196
LLPS-Cii-1791
ENSCING00000014650.2
F6V6D5
197
LLPS-Cii-1802
ENSCING00000003888.3
F6TAK3
198
LLPS-Cii-1819
ENSCING00000021395.1
H2XRY8
199
LLPS-Cii-1837
ENSCING00000018013.1
H2Y359
200
LLPS-Cii-1881
ENSCING00000010675.3
F6SD13
201
LLPS-Cii-1926
ENSCING00000021080.1
H2XUQ0
202
LLPS-Cii-1937
ENSCING00000007024.3
F7AE51
203
LLPS-Cii-1943
ENSCING00000018744.1
H2XXU0
204
LLPS-Cii-1947
ENSCING00000006386.3
F6QR00
205
LLPS-Cii-1950
ENSCING00000006395.3
F6RJT7
206
LLPS-Cii-1976
ENSCING00000020746.1
H2Y386
207
LLPS-Cii-1978
ENSCING00000001424.3
F6YRS8
208
LLPS-Cii-1985
ENSCING00000005175.3
F6Z194
209
LLPS-Cii-2007
ENSCING00000005463.3
F6UTP0
210
LLPS-Cii-2012
ENSCING00000004976.3
L7N0S2
211
LLPS-Cii-2017
ENSCING00000005018.3
F6TXK0
212
LLPS-Cii-2036
ENSCING00000000182.3
F6WFL4
213
LLPS-Cii-2063
ENSCING00000008860.3
F6R356
214
LLPS-Cii-2074
ENSCING00000014224.2
F6Y0T9
215
LLPS-Cii-2076
ENSCING00000022432.1
H2XXA9
216
LLPS-Cii-2097
ENSCING00000006914.3
F6WAD4
217
LLPS-Cii-2130
ENSCING00000008108.3
F6YN32
218
LLPS-Cii-2133
ENSCING00000003020.3
F6PPP8
219
LLPS-Cii-2159
ENSCING00000002661.3
F6YDG1
220
LLPS-Cii-2165
ENSCING00000023396.1
H2XUB7
221
LLPS-Cii-2180
ENSCING00000019633.1
H2Y0C0
222
LLPS-Cii-2182
ENSCING00000004527.3
F7A955
223
LLPS-Cii-2192
ENSCING00000003199.3
F6SPY1
224
LLPS-Cii-2199
ENSCING00000013216.2
F6V5K2
225
LLPS-Cii-2252
ENSCING00000002923.3
F7BIU1
226
LLPS-Cii-2256
ENSCING00000004244.3
F6YG27
227
LLPS-Cii-2265
ENSCING00000002102.3
F6ZS04
228
LLPS-Cii-2267
ENSCING00000014316.2
F6UMR8
229
LLPS-Cii-2295
ENSCING00000004208.3
F6YGT6
230
LLPS-Cii-2353
ENSCING00000012189.2
F6TU49
231
LLPS-Cii-2366
ENSCING00000012994.2
F6V7G7
232
LLPS-Cii-2367
ENSCING00000024842.1
H2XMA8
233
LLPS-Cii-1226
ENSCING00000011787.2
Q1RLB9
Ci-ATBF
234
LLPS-Cii-0633
ENSCING00000002977.3
Q4H3U1
Ci-BTF3
235
LLPS-Cii-0703
ENSCING00000002993.3
Q4H3S6
Ci-CNOT7/8
236
LLPS-Cii-2134
ENSCING00000023149.1
Q2PEE1
Ci-LC6
237
LLPS-Cii-1411
ENSCING00000005178.3
Q4H2U4
Ci-sFRP2
238
LLPS-Cii-1384
ENSCING00000021887.1
Q1RL87
Ci-ZF(AN1)-2
239
LLPS-Cii-0977
ENSCING00000001821.3
Q9NL43
CiGSK
240
LLPS-Cii-0578
ENSCING00000003902.3
Q967X2
CK2B
241
LLPS-Cii-0067
ENSCING00000000616.3
F6RRS1
LOC100175005
242
LLPS-Cii-1054
ENSCING00000003983.3
F6WKL0
LOC100175009
243
LLPS-Cii-2006
ENSCING00000008473.3
F6TQG1
LOC100175025
244
LLPS-Cii-0552
ENSCING00000023652.1
H2XY07
LOC100175029
245
LLPS-Cii-0644
ENSCING00000022650.1
H2XS20
LOC100175182
246
LLPS-Cii-1416
ENSCING00000007042.3
F6ZVE7
LOC100175295
247
LLPS-Cii-0019
ENSCING00000003455.3
F6UAX7
LOC100175452
248
LLPS-Cii-0095
ENSCING00000008874.3
F6QY24
LOC100175551
249
LLPS-Cii-0208
ENSCING00000008323.3
F6Q7D4
LOC100175786
250
LLPS-Cii-0194
ENSCING00000002292.3
F6PST3
LOC100175820
251
LLPS-Cii-0148
ENSCING00000009372.4
F6WXT4
LOC100175824
252
LLPS-Cii-0005
ENSCING00000006522.3
F6PH07
LOC100176009
253
LLPS-Cii-0575
ENSCING00000005003.3
F6TXT5
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