Pan paniscus      Paraspeckle


※ Paraspeckle introduction

    Paraspeckles are mammalian-specific nuclear bodies that often lie adjacent to splicing speckles, containing several multifunctional proteins, including PSF (PTB-associated splicing factor), p54nrb, PSP1andRBM14/CoAA/PSP2 (here- after referred to CoAA) (1), the long noncoding RNA NEAT1 assembles these protein components and is critical for paraspeckle formation. DIS3 was proved to be involved in controlling the formation of paraspeckles, nuclear bodies that are organized around NEAT1 lncRNA, whose short form was overexpressed in cells with mutated DIS3 (2). Paraspeckles regulate gene expression through a number of mechanisms, including sequestration of specific transcription factors and/or hyperedited mRNAs (3). Besides, RNA editing by the enzyme ADAR (Adenosine deaminase acting on RNA) was proved to occur in paraspeckles (4).

Reference
1. Chang, S. H., Chang, W. L., Lu, C. C., & Tarn, W. Y. (2014) Alanine repeats influence protein localization in splicing speckles and paraspeckles. Nucleic Acids Res, 42(22), 13788-13798. PMID: 25414336
2. Szczepinska, T., Kalisiak, K., Tomecki, R., Labno, A., Borowski, L. S., Kulinski, T. M., et al. (2015) DIS3 shapes the RNA polymerase II transcriptome in humans by degrading a variety of unwanted transcripts. Genome Res, 25(11), 1622-1633. PMID: 26294688
3. Adriaens, C., Standaert, L., Barra, J., Latil, M., Verfaillie, A., Kalev, P., et al. (2016) p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity. Nat Med, 22(8), 861-868. PMID: 27376578
4. Banerjee, A., Vest, K. E., Pavlath, G. K., & Corbett, A. H. (2017) Nuclear poly(A) binding protein 1 (PABPN1) and Matrin3 interact in muscle cells and regulate RNA processing. Nucleic Acids Res, 45(18), 10706-10725. PMID: 28977530


There are 31 genes.  Reviewed (0 or Unreviewed (31

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Pap-0047
ENSPPAG00000041394.1
A0A2R9CGH0
2
LLPS-Pap-0242
ENSPPAG00000030551.1
A0A2R9AGW9
3
LLPS-Pap-3364
ENSPPAG00000032357.1
A0A2R9AMS3
4
LLPS-Pap-3392
ENSPPAG00000017054.1
A0A2R8ZMM7
5
LLPS-Pap-4398
ENSPPAG00000032188.1
A0A2R9ATA4
6
LLPS-Pap-3461
ENSPPAG00000005301.1
A0A2R8Z8W7
CPSF6
7
LLPS-Pap-0084
ENSPPAG00000030190.1
A0A2R9AB38
DHX9
8
LLPS-Pap-0449
ENSPPAG00000041783.1
A0A2R9CB13
DIS3
9
LLPS-Pap-4408
ENSPPAG00000026244.1
A0A2R8ZQA6
ENOX1
10
LLPS-Pap-0565
ENSPPAG00000001687.1
A0A2R8Z6P6
FAM53A
11
LLPS-Pap-1622
ENSPPAG00000027228.1
A0A2R8ZVX0
FAM53B
12
LLPS-Pap-2931
ENSPPAG00000021153.1
A0A2R8ZK96
FOS
13
LLPS-Pap-0063
ENSPPAG00000029090.1
A0A2R9A818
FUS
14
LLPS-Pap-0596
ENSPPAG00000034872.1
A0A2R9B5B4
GATA1
15
LLPS-Pap-2156
ENSPPAG00000018027.1
A0A2R8ZHP5
HNRNPA1
16
LLPS-Pap-0083
ENSPPAG00000036393.1
A0A2R9BE93
IQCN
17
LLPS-Pap-2686
ENSPPAG00000015192.1
A0A2R8ZF10
KLF4
18
LLPS-Pap-1603
ENSPPAG00000040882.1
A0A2R9C2P7
LMNB2
19
LLPS-Pap-0784
ENSPPAG00000009836.1
A0A2R8ZB56
PSPC1
20
LLPS-Pap-3809
ENSPPAG00000033403.1
A0A2R9AZ82
RBM14
21
LLPS-Pap-2370
ENSPPAG00000015125.1
A0A2R8ZLH7
RBM4B
22
LLPS-Pap-2523
ENSPPAG00000029818.1
A0A2R9A7P6
SCYL1
23
LLPS-Pap-3722
ENSPPAG00000035718.1
A0A2R9BAC4
SH2B1
24
LLPS-Pap-3906
ENSPPAG00000036149.1
A0A2R9BCP2
SRSF11
25
LLPS-Pap-0244
ENSPPAG00000039086.1
A0A2R9C1F8
TARDBP
26
LLPS-Pap-1901
ENSPPAG00000028702.1
A0A2R9A5P4
TP53
27
LLPS-Pap-1462
ENSPPAG00000039158.1
A0A2R9C1F3
UVSSA
28
LLPS-Pap-3172
ENSPPAG00000028997.1
A0A2R9A858
XIAP
29
LLPS-Pap-1766
ENSPPAG00000028071.1
A0A2R8ZXI0
ZC3H8
30
LLPS-Pap-0571
ENSPPAG00000013302.1
A0A2R8ZDP9
ZNF24
31
LLPS-Pap-2795
ENSPPAG00000038804.1
A0A2R9BZ75
ZNF444