Mandrillus leucophaeus      Paraspeckle


※ Paraspeckle introduction

    Paraspeckles are mammalian-specific nuclear bodies that often lie adjacent to splicing speckles, containing several multifunctional proteins, including PSF (PTB-associated splicing factor), p54nrb, PSP1andRBM14/CoAA/PSP2 (here- after referred to CoAA) (1), the long noncoding RNA NEAT1 assembles these protein components and is critical for paraspeckle formation. DIS3 was proved to be involved in controlling the formation of paraspeckles, nuclear bodies that are organized around NEAT1 lncRNA, whose short form was overexpressed in cells with mutated DIS3 (2). Paraspeckles regulate gene expression through a number of mechanisms, including sequestration of specific transcription factors and/or hyperedited mRNAs (3). Besides, RNA editing by the enzyme ADAR (Adenosine deaminase acting on RNA) was proved to occur in paraspeckles (4).

Reference
1. Chang, S. H., Chang, W. L., Lu, C. C., & Tarn, W. Y. (2014) Alanine repeats influence protein localization in splicing speckles and paraspeckles. Nucleic Acids Res, 42(22), 13788-13798. PMID: 25414336
2. Szczepinska, T., Kalisiak, K., Tomecki, R., Labno, A., Borowski, L. S., Kulinski, T. M., et al. (2015) DIS3 shapes the RNA polymerase II transcriptome in humans by degrading a variety of unwanted transcripts. Genome Res, 25(11), 1622-1633. PMID: 26294688
3. Adriaens, C., Standaert, L., Barra, J., Latil, M., Verfaillie, A., Kalev, P., et al. (2016) p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity. Nat Med, 22(8), 861-868. PMID: 27376578
4. Banerjee, A., Vest, K. E., Pavlath, G. K., & Corbett, A. H. (2017) Nuclear poly(A) binding protein 1 (PABPN1) and Matrin3 interact in muscle cells and regulate RNA processing. Nucleic Acids Res, 45(18), 10706-10725. PMID: 28977530


There are 30 genes.  Reviewed (0 or Unreviewed (30

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Mal-0084
ENSMLEG00000044414.1
A0A2K6AL43
2
LLPS-Mal-0598
ENSMLEG00000034623.1
A0A2K5YZ48
3
LLPS-Mal-2008
ENSMLEG00000010643.1
A0A2K5XH19
4
LLPS-Mal-2658
ENSMLEG00000030413.1
A0A2K5YA95
5
LLPS-Mal-4253
ENSMLEG00000041587.1
A0A2K6A485
CHMP6
6
LLPS-Mal-2047
ENSMLEG00000003957.1
A0A2K5XCM3
CPSF6
7
LLPS-Mal-2926
ENSMLEG00000031361.1
A0A2K5YFS3
CYBA
8
LLPS-Mal-0061
ENSMLEG00000039925.1
A0A2K5ZUW5
DHX9
9
LLPS-Mal-1209
ENSMLEG00000030670.1
A0A2K5YBV5
DIS3
10
LLPS-Mal-3393
ENSMLEG00000027764.1
A0A2K5XVZ8
ENOX1
11
LLPS-Mal-1506
ENSMLEG00000035332.1
A0A2K5Z335
FAM53A
12
LLPS-Mal-3418
ENSMLEG00000035214.1
A0A2K5Z2K2
FAM53B
13
LLPS-Mal-0289
ENSMLEG00000040559.1
A0A2K5ZY15
FOS
14
LLPS-Mal-0523
ENSMLEG00000038040.1
A0A2K5ZIM2
FUS
15
LLPS-Mal-1130
ENSMLEG00000031222.1
A0A2K5YEX9
GATA1
16
LLPS-Mal-3009
ENSMLEG00000030916.1
A0A2K5YD99
HECTD3
17
LLPS-Mal-3749
ENSMLEG00000031635.1
A0A2K5YHC4
IQCN
18
LLPS-Mal-2399
ENSMLEG00000042452.1
A0A2K6A9N4
NONO
19
LLPS-Mal-0491
ENSMLEG00000039043.1
A0A2K5ZPF4
PSPC1
20
LLPS-Mal-3048
ENSMLEG00000024601.1
A0A2K5XQR4
RBM14
21
LLPS-Mal-1943
ENSMLEG00000028563.1
A0A2K5XZI1
RBM4B
22
LLPS-Mal-0986
ENSMLEG00000029164.1
A0A2K5Y3A0
SCYL1
23
LLPS-Mal-0095
ENSMLEG00000044400.1
A0A2K6AL03
SH2B1
24
LLPS-Mal-3831
ENSMLEG00000041592.1
A0A2K6A4B7
SRSF11
25
LLPS-Mal-1698
ENSMLEG00000041791.1
A0A2K6A5S4
TARDBP
26
LLPS-Mal-0198
ENSMLEG00000042592.1
A0A2K6AAI9
TP53
27
LLPS-Mal-3713
ENSMLEG00000007158.1
A0A2K5XEU8
UVSSA
28
LLPS-Mal-3675
ENSMLEG00000041038.1
A0A2K6A0X9
XIAP
29
LLPS-Mal-0906
ENSMLEG00000029980.1
A0A2K5Y7U4
ZC3H8
30
LLPS-Mal-1577
ENSMLEG00000036317.1
A0A2K5Z933
ZNF24