Verticillium dahliae      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 31 genes.  Reviewed (0 or Unreviewed (31

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Ved-1530
VDAG_00074
G2WR91
VDAG_00074
2
LLPS-Ved-1027
VDAG_00222
G2WRN9
VDAG_00222
3
LLPS-Ved-0549
VDAG_00538
G2WQ96
VDAG_00538
4
LLPS-Ved-1468
VDAG_01884
G2WW98
VDAG_01884
5
LLPS-Ved-0732
VDAG_02725
G2WWU6
VDAG_02725
6
LLPS-Ved-1415
VDAG_02758
G2WWX9
VDAG_02758
7
LLPS-Ved-0189
VDAG_03004
G2WZY1
VDAG_03004
8
LLPS-Ved-0965
VDAG_03152
G2WYR0
VDAG_03152
9
LLPS-Ved-0614
VDAG_03182
G2WYU0
VDAG_03182
10
LLPS-Ved-0179
VDAG_03509
G2WZR7
VDAG_03509
11
LLPS-Ved-0326
VDAG_04191
G2X2Z7
VDAG_04191
12
LLPS-Ved-0038
VDAG_04264
G2X1U0
VDAG_04264
13
LLPS-Ved-1227
VDAG_04265
G2X1U1
VDAG_04265
14
LLPS-Ved-0011
VDAG_04354
G2X230
VDAG_04354
15
LLPS-Ved-0890
VDAG_04577
G2X3J0
VDAG_04577
16
LLPS-Ved-0475
VDAG_05627
G2X5X2
VDAG_05627
17
LLPS-Ved-1436
VDAG_05893
G2X6W1
VDAG_05893
18
LLPS-Ved-1031
VDAG_06470
G2X7L2
VDAG_06470
19
LLPS-Ved-0816
VDAG_06625
G2X8Z3
VDAG_06625
20
LLPS-Ved-0410
VDAG_08347
G2XDW5
VDAG_08347
21
LLPS-Ved-0246
VDAG_08859
G2XFC7
VDAG_08859
22
LLPS-Ved-1352
VDAG_08864
G2XG77
VDAG_08864
23
LLPS-Ved-0143
VDAG_09309
G2XGM7
VDAG_09309
24
LLPS-Ved-0224
VDAG_09663
G2XI13
VDAG_09663
25
LLPS-Ved-0800
VDAG_10000
G2XIL8
VDAG_10000
26
LLPS-Ved-0336
VDAG_10099
G2XIX6
VDAG_10099
27
LLPS-Ved-0177
VDAG_10253
G2XJC1
VDAG_10253
28
LLPS-Ved-0186
VDAG_10305
G2XJP2
VDAG_10305
29
LLPS-Ved-0205
VDAG_10316
G2XJI4
VDAG_10316
30
LLPS-Ved-0181
VDAG_10352
G2XJF1
VDAG_10352
31
LLPS-Ved-0562
VDAG_10424
G2XJU2
VDAG_10424