Scophthalmus maximus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 102 genes.  Reviewed (0 or Unreviewed (102

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Scm-0150
ENSSMAG00000020763.1
2
LLPS-Scm-0235
ENSSMAG00000004730.1
3
LLPS-Scm-0620
ENSSMAG00000009719.1
4
LLPS-Scm-0721
ENSSMAG00000011752.1
5
LLPS-Scm-0829
ENSSMAG00000013304.1
6
LLPS-Scm-0931
ENSSMAG00000019286.1
7
LLPS-Scm-1830
ENSSMAG00000020810.1
8
LLPS-Scm-2378
ENSSMAG00000006862.1
9
LLPS-Scm-2498
ENSSMAG00000001707.1
10
LLPS-Scm-2888
ENSSMAG00000018162.1
11
LLPS-Scm-4017
ENSSMAG00000014089.1
A0A2U9CYV9
AGO2
12
LLPS-Scm-1682
ENSSMAG00000001440.1
A0A2U9CIS8
SMAX5B_000374
13
LLPS-Scm-0967
ENSSMAG00000006544.1
A0A2U9CKC1
SMAX5B_000507
14
LLPS-Scm-2689
ENSSMAG00000006102.1
A0A2U9C733
SMAX5B_000885
15
LLPS-Scm-3188
ENSSMAG00000012319.1
A0A2U9CJT2
SMAX5B_001057
16
LLPS-Scm-1575
ENSSMAG00000015079.1
A0A2U9CRB3
SMAX5B_001390
17
LLPS-Scm-0650
ENSSMAG00000012475.1
A0A2U9CVA6
SMAX5B_001650
18
LLPS-Scm-1434
ENSSMAG00000020157.1
A0A2U9CWC2
SMAX5B_001736
19
LLPS-Scm-1119
ENSSMAG00000004426.1
A0A2U9D2B4
SMAX5B_002094
20
LLPS-Scm-1684
ENSSMAG00000000361.1
A0A2U9BH03
SMAX5B_002204
21
LLPS-Scm-0252
ENSSMAG00000000387.1
A0A2U9BGG8
SMAX5B_002302
22
LLPS-Scm-2499
ENSSMAG00000000703.1
A0A2U9BFZ0
SMAX5B_002376
23
LLPS-Scm-2205
ENSSMAG00000003165.1
A0A2U9AWZ6
SMAX5B_002538
24
LLPS-Scm-1627
ENSSMAG00000007518.1
A0A2U9BYG0
SMAX5B_002693
25
LLPS-Scm-1578
ENSSMAG00000006545.1
A0A2U9C001
SMAX5B_002735
26
LLPS-Scm-0439
ENSSMAG00000014554.1
A0A2U9BDQ4
SMAX5B_003225
27
LLPS-Scm-2703
ENSSMAG00000009318.1
A0A2U9CJI9
SMAX5B_003441
28
LLPS-Scm-3283
ENSSMAG00000011139.1
A0A2U9CJM8
SMAX5B_003489
29
LLPS-Scm-1348
ENSSMAG00000001761.1
A0A2U9AVH3
SMAX5B_003928
30
LLPS-Scm-2779
ENSSMAG00000000065.1
A0A2U9AVC2
SMAX5B_003945
31
LLPS-Scm-2220
ENSSMAG00000019693.1
A0A2U9B949
SMAX5B_004104
32
LLPS-Scm-0521
ENSSMAG00000007229.1
A0A2U9B7U2
SMAX5B_004205
33
LLPS-Scm-3197
ENSSMAG00000016161.1
A0A2U9B8Q1
SMAX5B_004220
34
LLPS-Scm-1170
ENSSMAG00000007018.1
A0A2U9B4G7
SMAX5B_004570
35
LLPS-Scm-3405
ENSSMAG00000003271.1
A0A2U9BB40
SMAX5B_004732
36
LLPS-Scm-2104
ENSSMAG00000007549.1
A0A2U9AVP8
SMAX5B_004979
37
LLPS-Scm-2677
ENSSMAG00000002629.1
A0A2U9BJP0
SMAX5B_005871
38
LLPS-Scm-1340
ENSSMAG00000003821.1
A0A2U9CPM4
SMAX5B_005954
39
LLPS-Scm-3531
ENSSMAG00000016701.1
A0A2U9CP74
SMAX5B_006097
40
LLPS-Scm-1947
ENSSMAG00000002392.1
A0A2U9CQN9
SMAX5B_006120
41
LLPS-Scm-1468
ENSSMAG00000019897.1
A0A2U9BIU7
SMAX5B_006614
42
LLPS-Scm-0846
ENSSMAG00000008798.1
A0A2U9BKD5
SMAX5B_006615
43
LLPS-Scm-3315
ENSSMAG00000009086.1
A0A2U9CDY0
SMAX5B_006872
44
LLPS-Scm-2481
ENSSMAG00000013905.1
A0A2U9BNP5
SMAX5B_007545
45
LLPS-Scm-2047
ENSSMAG00000019153.1
A0A2U9C452
SMAX5B_007878
46
LLPS-Scm-1284
ENSSMAG00000015718.1
A0A2U9CCX8
SMAX5B_008601
47
LLPS-Scm-0766
ENSSMAG00000018300.1
A0A2U9CE70
SMAX5B_008692
48
LLPS-Scm-2082
ENSSMAG00000001917.1
A0A2U9CDE2
SMAX5B_008733
49
LLPS-Scm-0099
ENSSMAG00000006954.1
A0A2U9CSW0
SMAX5B_008782
50
LLPS-Scm-2523
ENSSMAG00000002273.1
A0A2U9C7C5
SMAX5B_008857
51
LLPS-Scm-0301
ENSSMAG00000017335.1
A0A2U9CJ48
SMAX5B_008941
52
LLPS-Scm-1911
ENSSMAG00000008760.1
A0A2U9CJW2
SMAX5B_009014
53
LLPS-Scm-2758
ENSSMAG00000007587.1
A0A2U9BZ08
SMAX5B_009916
54
LLPS-Scm-2921
ENSSMAG00000020476.1
A0A2U9B634
SMAX5B_010210
55
LLPS-Scm-0847
ENSSMAG00000013977.1
A0A2U9CD78
SMAX5B_010234
56
LLPS-Scm-2121
ENSSMAG00000002899.1
A0A2U9BSX1
SMAX5B_010452
57
LLPS-Scm-2051
ENSSMAG00000006695.1
A0A2U9BT86
SMAX5B_010816
58
LLPS-Scm-1809
ENSSMAG00000002217.1
A0A2U9BR80
SMAX5B_010866
59
LLPS-Scm-1748
ENSSMAG00000004275.1
A0A2U9BRA9
SMAX5B_011038
60
LLPS-Scm-2694
ENSSMAG00000010408.1
A0A2U9BTU7
SMAX5B_011042
61
LLPS-Scm-0855
ENSSMAG00000005463.1
A0A2U9BRE9
SMAX5B_011043
62
LLPS-Scm-3923
ENSSMAG00000000229.1
A0A2U9BMH8
SMAX5B_011369
63
LLPS-Scm-0902
ENSSMAG00000001832.1
A0A2U9BN21
SMAX5B_011497
64
LLPS-Scm-2515
ENSSMAG00000012582.1
A0A2U9AXY3
SMAX5B_011831
65
LLPS-Scm-2550
ENSSMAG00000021302.1
A0A2U9BCI7
SMAX5B_012383
66
LLPS-Scm-3075
ENSSMAG00000010740.1
A0A2U9BXF9
SMAX5B_012808
67
LLPS-Scm-2295
ENSSMAG00000017044.1
A0A2U9BAN1
SMAX5B_012940
68
LLPS-Scm-1169
ENSSMAG00000013978.1
A0A2U9CNN5
SMAX5B_013018
69
LLPS-Scm-2732
ENSSMAG00000017736.1
A0A2U9B535
SMAX5B_013355
70
LLPS-Scm-2390
ENSSMAG00000012234.1
A0A2U9B576
SMAX5B_013406
71
LLPS-Scm-3592
ENSSMAG00000009579.1
A0A2U9CIG2
SMAX5B_013774
72
LLPS-Scm-3319
ENSSMAG00000018587.1
A0A2U9C357
SMAX5B_014623
73
LLPS-Scm-2299
ENSSMAG00000011897.1
A0A2U9C0C9
SMAX5B_014896
74
LLPS-Scm-0453
ENSSMAG00000008612.1
A0A2U9CY80
SMAX5B_015603
75
LLPS-Scm-1848
ENSSMAG00000018201.1
A0A2U9CZ25
SMAX5B_015910
76
LLPS-Scm-0945
ENSSMAG00000001247.1
A0A2U9AWZ7
SMAX5B_015982
77
LLPS-Scm-0128
ENSSMAG00000013779.1
A0A2U9CRZ5
SMAX5B_016015
78
LLPS-Scm-2128
ENSSMAG00000020213.1
A0A2U9BLA7
SMAX5B_016248
79
LLPS-Scm-0133
ENSSMAG00000016606.1
A0A2U9BV99
SMAX5B_016474
80
LLPS-Scm-0787
ENSSMAG00000019461.1
A0A2U9BT67
SMAX5B_016556
81
LLPS-Scm-1837
ENSSMAG00000017105.1
A0A2U9CM44
SMAX5B_017144
82
LLPS-Scm-1354
ENSSMAG00000005854.1
A0A2U9CMX0
SMAX5B_017265
83
LLPS-Scm-1854
ENSSMAG00000013604.1
A0A2U9CGC6
SMAX5B_018117
84
LLPS-Scm-0561
ENSSMAG00000008159.1
A0A2U9CAZ8
SMAX5B_018485
85
LLPS-Scm-3309
ENSSMAG00000013775.1
A0A2U9C942
SMAX5B_018516
86
LLPS-Scm-1958
ENSSMAG00000018406.1
A0A2U9C9M7
SMAX5B_018538
87
LLPS-Scm-0618
ENSSMAG00000019677.1
A0A2U9BSH6
SMAX5B_018816
88
LLPS-Scm-2572
ENSSMAG00000009863.1
A0A2U9C5D5
SMAX5B_019139
89
LLPS-Scm-1187
ENSSMAG00000016096.1
A0A2U9CTP8
SMAX5B_020052
90
LLPS-Scm-2969
ENSSMAG00000011965.1
A0A2U9CNS2
SMAX5B_020210
91
LLPS-Scm-1092
ENSSMAG00000019224.1
A0A2U9C1S1
SMAX5B_020469
92
LLPS-Scm-0406
ENSSMAG00000016933.1
A0A2U9CQS9
SMAX5B_020962
93
LLPS-Scm-1338
ENSSMAG00000001980.1
A0A2U9CR29
SMAX5B_020971
94
LLPS-Scm-2397
ENSSMAG00000014486.1
A0A2U9CQI4
SMAX5B_021021
95
LLPS-Scm-2828
ENSSMAG00000009283.1
A0A2U9CW35
SMAX5B_021048
96
LLPS-Scm-1026
ENSSMAG00000012368.1
A0A2U9B1X4
SMAX5B_021405
97
LLPS-Scm-3194
ENSSMAG00000021057.1
A0A2U9BN85
SMAX5B_021576
98
LLPS-Scm-3074
ENSSMAG00000016790.1
A0A2U9BLP2
SMAX5B_021751
99
LLPS-Scm-2271
ENSSMAG00000016551.1
A0A2U9CI47
SMAX5B_021887
100
LLPS-Scm-2460
ENSSMAG00000010614.1
A0A2U9CJT8
SMAX5B_021906
101
LLPS-Scm-0448
ENSSMAG00000013890.1
A0A2U9AWL5
SMAX5B_022044
102
LLPS-Scm-3752
ENSSMAG00000019880.1
A0A2U9B7U4
SMAX5B_022172