Rattus norvegicus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 114 genes.  Reviewed (8 or Unreviewed (106

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Ran-0008
ENSRNOG00000010362.7
Q07936
Anxa2
2
LLPS-Ran-0004
ENSRNOG00000011175.8
A7VJC2
Hnrnpa2b1
3
LLPS-Ran-0590
ENSRNOG00000019113.7
P61980
Hnrnpk
4
LLPS-Ran-0025
ENSRNOG00000003689.6
Q5FVM4
Nono
5
LLPS-Ran-0047
ENSRNOG00000020782.7
Q4KLH4
Pspc1
6
LLPS-Ran-0032
ENSRNOG00000058461.1
A0A0G2K8K0
Sfpq
7
LLPS-Ran-0003
ENSRNOG00000000248.6
Q6PDU1
Srsf2
8
LLPS-Ran-0745
ENSRNOG00000001783.6
P62997
Tra2b
9
LLPS-Ran-1814
ENSRNOG00000008533.4
Q9QZ81
Ago2
10
LLPS-Ran-3429
ENSRNOG00000028211.5
F1MAF2
Akap17a
11
LLPS-Ran-0467
ENSRNOG00000036687.3
D3ZXH7
Alyref
12
LLPS-Ran-2701
ENSRNOG00000014339.7
D3ZXN8
Anxa10
13
LLPS-Ran-0515
ENSRNOG00000001080.5
Q4V8I5
Arl6ip4
14
LLPS-Ran-4608
ENSRNOG00000010027.7
D3Z822
Atr
15
LLPS-Ran-2187
ENSRNOG00000018783.6
B5DFM8
Bcas2
16
LLPS-Ran-2308
ENSRNOG00000031129.6
Q4AE70
Carm1
17
LLPS-Ran-2396
ENSRNOG00000009716.4
Q8K3X0
Casc3
18
LLPS-Ran-2877
ENSRNOG00000011586.7
Q9R1Q2
Ccnl1
19
LLPS-Ran-1572
ENSRNOG00000019975.5
O08837
Cdc5l
20
LLPS-Ran-2054
ENSRNOG00000000632.6
P39951
Cdk1
21
LLPS-Ran-0193
ENSRNOG00000018510.8
P51952
Cdk7
22
LLPS-Ran-2442
ENSRNOG00000022586.4
Q641Z4
Cdk9
23
LLPS-Ran-4138
ENSRNOG00000003742.8
D3ZG85
Cdkl5
24
LLPS-Ran-2876
ENSRNOG00000020500.6
A0A0G2K5Q8
Clk2
25
LLPS-Ran-0253
ENSRNOG00000042492.4
A0A096UWG1
Cop1
26
LLPS-Ran-4040
ENSRNOG00000017106.6
P97633
Csnk1a1
27
LLPS-Ran-2889
ENSRNOG00000012021.7
Q4V8K2
Ctnnbl1
28
LLPS-Ran-1696
ENSRNOG00000000841.7
Q63413
Ddx39b
29
LLPS-Ran-2695
ENSRNOG00000021637.6
Q62780
Ddx46
30
LLPS-Ran-0088
ENSRNOG00000001886.5
D4A2G4
Dgcr8
31
LLPS-Ran-0607
ENSRNOG00000021824.5
D3ZUU5
Dnajb1
32
LLPS-Ran-4163
ENSRNOG00000012368.7
D3ZSC8
Dnajc17
33
LLPS-Ran-0675
ENSRNOG00000004870.5
Q4V8A3
Dyrk3
34
LLPS-Ran-0631
ENSRNOG00000004883.7
A0A0G2KAN5
Erh
35
LLPS-Ran-0390
ENSRNOG00000020336.6
F1LZH3
Ezh1
36
LLPS-Ran-3099
ENSRNOG00000024863.5
D3Z8B9
Fam76b
37
LLPS-Ran-3254
ENSRNOG00000030264.4
D3ZRK0
Fam83h
38
LLPS-Ran-4488
ENSRNOG00000061085.1
Q6IV68
Fancd2
39
LLPS-Ran-4878
ENSRNOG00000016689.8
D3Z840
Fanci
40
LLPS-Ran-1060
ENSRNOG00000001117.6
D3ZU50
Fbxl18
41
LLPS-Ran-3943
ENSRNOG00000016050.7
Q04589
Fgfr1
42
LLPS-Ran-2510
ENSRNOG00000020881.7
Q5U2R3
Frmd8
43
LLPS-Ran-0549
ENSRNOG00000023360.4
Q5PQK2
Fus
44
LLPS-Ran-4383
ENSRNOG00000034233.6
Q7TQ84
Fyttd1
45
LLPS-Ran-2373
ENSRNOG00000014395.7
F1M9H1
Gli3
46
LLPS-Ran-2978
ENSRNOG00000002833.7
P18266
Gsk3b
47
LLPS-Ran-1448
ENSRNOG00000008292.6
O35800
Hif1a
48
LLPS-Ran-3194
ENSRNOG00000017198.5
Q9JHS2
Hif3a
49
LLPS-Ran-3195
ENSRNOG00000007034.6
D3ZN85
Hipk2
50
LLPS-Ran-0556
ENSRNOG00000000902.7
Q66HA8
Hsph1
51
LLPS-Ran-2177
ENSRNOG00000014154.7
Q7TP98
Ilf2
52
LLPS-Ran-1620
ENSRNOG00000022741.6
Q9JIL3
Ilf3
53
LLPS-Ran-3866
ENSRNOG00000002618.7
A0A0G2K427
Ivns1abp
54
LLPS-Ran-3313
ENSRNOG00000015329.6
Q6P6T9
Kpna2
55
LLPS-Ran-3670
ENSRNOG00000051964.2
A0A0G2K5M0
LOC108348190
56
LLPS-Ran-4612
ENSRNOG00000039601.3
E9PSJ8
LOC683469
57
LLPS-Ran-2569
ENSRNOG00000020488.7
G3V9R0
Luc7l
58
LLPS-Ran-1044
ENSRNOG00000006001.6
B2RYP6
Luc7l2
59
LLPS-Ran-1570
ENSRNOG00000012778.6
Q27W02
Magoh
60
LLPS-Ran-1382
ENSRNOG00000013911.6
P81799
Nagk
61
LLPS-Ran-0239
ENSRNOG00000020543.7
D3ZH12
Nosip
62
LLPS-Ran-2224
ENSRNOG00000012682.6
P50569
Nr5a1
63
LLPS-Ran-1894
ENSRNOG00000022502.6
Q4FZU3
Nsrp1
64
LLPS-Ran-1701
ENSRNOG00000000034.6
Q66HE5
Nuak2
65
LLPS-Ran-3169
ENSRNOG00000052140.1
O70249
Ogg1
66
LLPS-Ran-1707
ENSRNOG00000013902.4
Q9EPX4
P2ry12
67
LLPS-Ran-3532
ENSRNOG00000042195.3
G3V7Z8
Pabpn1
68
LLPS-Ran-1513
ENSRNOG00000006655.7
Q9WUC8
Plrg1
69
LLPS-Ran-1970
ENSRNOG00000004061.5
D3ZAY8
Pnn
70
LLPS-Ran-0221
ENSRNOG00000007673.6
O55035
Ppig
71
LLPS-Ran-1646
ENSRNOG00000020897.6
Q9JMJ4
Prpf19
72
LLPS-Ran-0959
ENSRNOG00000003495.7
G3V6H2
Prpf8
73
LLPS-Ran-3447
ENSRNOG00000007851.6
P18422
Psma3
74
LLPS-Ran-2782
ENSRNOG00000010448.9
Q00438
Ptbp1
75
LLPS-Ran-0089
ENSRNOG00000014316.8
F1M8L9
Rapgef1
76
LLPS-Ran-0633
ENSRNOG00000018767.6
Q6AY02
Rbm17
77
LLPS-Ran-0339
ENSRNOG00000007371.8
B0BN49
Rbmx2
78
LLPS-Ran-0305
ENSRNOG00000007532.7
A0A096MJX5
RGD1305178
79
LLPS-Ran-2818
ENSRNOG00000014127.5
D3ZJQ8
Rnf151
80
LLPS-Ran-0966
ENSRNOG00000008703.6
Q6AYK1
Rnps1
81
LLPS-Ran-1914
ENSRNOG00000030520.3
Q498U4
Sarnp
82
LLPS-Ran-2357
ENSRNOG00000021085.8
F1LSC3
Sf1
83
LLPS-Ran-0418
ENSRNOG00000005218.5
D3ZQM0
Sf3a1
84
LLPS-Ran-0797
ENSRNOG00000019349.3
Q6AXT8
Sf3a2
85
LLPS-Ran-2441
ENSRNOG00000007629.7
Q4KLI7
Sf3a3
86
LLPS-Ran-0998
ENSRNOG00000013516.6
G3V7T6
Sf3b1
87
LLPS-Ran-2860
ENSRNOG00000008620.5
P84025
Smad3
88
LLPS-Ran-1992
ENSRNOG00000012157.7
F1LNJ2
Snrnp200
89
LLPS-Ran-2988
ENSRNOG00000001060.7
Q5U1W5
Snrnp35
90
LLPS-Ran-0074
ENSRNOG00000020763.8
B2RZ74
Snrnp70
91
LLPS-Ran-0365
ENSRNOG00000001501.4
Q5U214
Snrpa
92
LLPS-Ran-0656
ENSRNOG00000011932.8
D3ZZR5
Snrpa1
93
LLPS-Ran-1597
ENSRNOG00000004967.7
B5DEQ4
Snrpb2
94
LLPS-Ran-1226
ENSRNOG00000002021.8
F1MAQ7
Son
95
LLPS-Ran-3642
ENSRNOG00000004686.6
B2RYD9
Spop
96
LLPS-Ran-1234
ENSRNOG00000050323.1
D4A9L2
Srsf1
97
LLPS-Ran-0395
ENSRNOG00000007992.6
Q4KM38
Srsf10
98
LLPS-Ran-1301
ENSRNOG00000029592.5
A0A0G2QC38
Srsf11
99
LLPS-Ran-1681
ENSRNOG00000000520.8
Q0ZFS8
Srsf3
100
LLPS-Ran-1042
ENSRNOG00000010007.5
G3V798
Srsf4
101
LLPS-Ran-0826
ENSRNOG00000027360.6
D4A720
Srsf7
102
LLPS-Ran-1356
ENSRNOG00000001163.4
Q5PPI1
Srsf9
103
LLPS-Ran-2567
ENSRNOG00000019742.5
P52631
Stat3
104
LLPS-Ran-1900
ENSRNOG00000016133.5
Q5I0H3
Sumo1
105
LLPS-Ran-0223
ENSRNOG00000007036.6
P80204
Tgfbr1
106
LLPS-Ran-3430
ENSRNOG00000011261.6
D3ZM05
Ttc14
107
LLPS-Ran-1652
ENSRNOG00000015914.7
F2Z3T9
U2af2
108
LLPS-Ran-1823
ENSRNOG00000008607.8
D3ZAI0
U2surp
109
LLPS-Ran-2010
ENSRNOG00000009935.5
Q80U96
Xpo1
110
LLPS-Ran-4411
ENSRNOG00000001996.7
Q9QY02
Ythdc1
111
LLPS-Ran-1239
ENSRNOG00000053210.1
Q0ZFS5
Zc3h11a
112
LLPS-Ran-3360
ENSRNOG00000052583.1
A0A0G2JT65
Zfp106
113
LLPS-Ran-2186
ENSRNOG00000015925.7
B1WC22
Zfp131
114
LLPS-Ran-1920
ENSRNOG00000018379.5
D3ZAB7
Zfp688