Pelodiscus sinensis      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 92 genes.  Reviewed (0 or Unreviewed (92

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Pes-0027
ENSPSIG00000008238.1
K7FLY1
2
LLPS-Pes-0690
ENSPSIG00000008097.1
K7FLM0
3
LLPS-Pes-0860
ENSPSIG00000002300.1
K7F2R0
4
LLPS-Pes-2048
ENSPSIG00000009737.1
K7FRS2
5
LLPS-Pes-2492
ENSPSIG00000004397.1
K7F9J0
6
LLPS-Pes-2785
ENSPSIG00000017939.1
K7GIZ3
7
LLPS-Pes-2938
ENSPSIG00000006126.1
K7FF16
8
LLPS-Pes-3672
ENSPSIG00000008448.1
K7FMP0
AKAP17A
9
LLPS-Pes-1656
ENSPSIG00000017541.1
K7GHL5
ALYREF
10
LLPS-Pes-0553
ENSPSIG00000004447.1
K7F9Q5
ANXA10
11
LLPS-Pes-1058
ENSPSIG00000012686.1
K7G1W1
ANXA2
12
LLPS-Pes-2174
ENSPSIG00000017887.1
K7GIT8
ATR
13
LLPS-Pes-0785
ENSPSIG00000003768.1
K7F7H5
BCAS2
14
LLPS-Pes-1521
ENSPSIG00000005885.1
K7FEC9
C9orf78
15
LLPS-Pes-0233
ENSPSIG00000002339.1
K7F2V4
CASC3
16
LLPS-Pes-3328
ENSPSIG00000004759.1
K7FAQ0
CCNL1
17
LLPS-Pes-1332
ENSPSIG00000013123.1
K7G2Y2
CDC5L
18
LLPS-Pes-0323
ENSPSIG00000015630.1
K7GBF0
CDK1
19
LLPS-Pes-2589
ENSPSIG00000010079.1
K7FT73
CDK7
20
LLPS-Pes-2397
ENSPSIG00000012225.1
K7G056
CDK9
21
LLPS-Pes-2974
ENSPSIG00000012675.1
K7G1G2
CDKL5
22
LLPS-Pes-0440
ENSPSIG00000010859.1
K7FVU9
CLK2
23
LLPS-Pes-1908
ENSPSIG00000011941.1
K7FZ14
COP1
24
LLPS-Pes-2207
ENSPSIG00000012179.1
K7G092
CSNK1A1
25
LLPS-Pes-0320
ENSPSIG00000011705.1
K7FZ60
CTNNBL1
26
LLPS-Pes-1469
ENSPSIG00000004522.1
K7F9X8
DDX46
27
LLPS-Pes-1501
ENSPSIG00000006672.1
K7FGU0
DNAJB1
28
LLPS-Pes-1124
ENSPSIG00000013165.1
K7G3H6
DNAJC17
29
LLPS-Pes-2378
ENSPSIG00000003551.1
K7F6T0
DYRK3
30
LLPS-Pes-3425
ENSPSIG00000002838.1
K7F4H3
EGF
31
LLPS-Pes-0840
ENSPSIG00000011777.1
K7FYI0
ERH
32
LLPS-Pes-2911
ENSPSIG00000003110.1
K7F5D5
FAM83H
33
LLPS-Pes-0630
ENSPSIG00000013597.1
K7G4J5
FANCI
34
LLPS-Pes-2196
ENSPSIG00000010848.1
K7FVH8
FBXL18
35
LLPS-Pes-3793
ENSPSIG00000006400.1
K7FGA2
FGFR1
36
LLPS-Pes-1778
ENSPSIG00000003850.1
K7F7S8
FRMD8
37
LLPS-Pes-0672
ENSPSIG00000009438.1
K7FQT2
FUS
38
LLPS-Pes-3803
ENSPSIG00000002293.1
K7F2Q1
FYTTD1
39
LLPS-Pes-3458
ENSPSIG00000017804.1
K7GIN4
GLI3
40
LLPS-Pes-1847
ENSPSIG00000008971.1
K7FPQ8
GSK3B
41
LLPS-Pes-1194
ENSPSIG00000010467.1
K7FUF4
HIF1A
42
LLPS-Pes-3375
ENSPSIG00000015313.1
K7GA98
HIPK2
43
LLPS-Pes-0944
ENSPSIG00000002659.1
K7F3X0
HNRNPA2B1
44
LLPS-Pes-2569
ENSPSIG00000003480.1
K7F6J6
HNRNPK
45
LLPS-Pes-2024
ENSPSIG00000004657.1
K7FAD4
ILF2
46
LLPS-Pes-0516
ENSPSIG00000008298.1
K7FM39
ILF3
47
LLPS-Pes-3316
ENSPSIG00000008720.1
K7FNH6
IVNS1ABP
48
LLPS-Pes-0806
ENSPSIG00000009274.1
K7FQJ3
KPNA2
49
LLPS-Pes-2539
ENSPSIG00000011866.1
K7FZ33
LUC7L
50
LLPS-Pes-1624
ENSPSIG00000011022.1
K7FW76
NAGK
51
LLPS-Pes-0998
ENSPSIG00000010678.1
K7FV80
NONO
52
LLPS-Pes-2007
ENSPSIG00000008905.1
K7FP33
NSRP1
53
LLPS-Pes-2643
ENSPSIG00000009103.1
K7FPW0
NUAK2
54
LLPS-Pes-1401
ENSPSIG00000003404.1
K7F6B8
PABPN1L
55
LLPS-Pes-0254
ENSPSIG00000010584.1
K7FV04
PLRG1
56
LLPS-Pes-0883
ENSPSIG00000013724.1
K7G582
PNN
57
LLPS-Pes-0424
ENSPSIG00000002252.1
K7F2K6
PPIG
58
LLPS-Pes-2529
ENSPSIG00000007497.1
K7FK22
PRPF19
59
LLPS-Pes-1048
ENSPSIG00000013393.1
K7G4W3
PRPF8
60
LLPS-Pes-2392
ENSPSIG00000014260.1
K7G734
PSMA3
61
LLPS-Pes-1989
ENSPSIG00000005168.1
K7FC31
PSPC1
62
LLPS-Pes-1392
ENSPSIG00000014192.1
K7G6X7
PTBP1
63
LLPS-Pes-2790
ENSPSIG00000008426.1
K7FMX2
RAPGEF1
64
LLPS-Pes-2061
ENSPSIG00000012332.1
K7G0G7
RBM17
65
LLPS-Pes-2570
ENSPSIG00000006048.1
K7FES5
RNPS1
66
LLPS-Pes-3193
ENSPSIG00000002998.1
K7F510
SARNP
67
LLPS-Pes-1325
ENSPSIG00000012803.1
K7G1W6
SF3A1
68
LLPS-Pes-1236
ENSPSIG00000010839.1
K7FVK8
SF3A2
69
LLPS-Pes-1310
ENSPSIG00000004273.1
K7F990
SF3A3
70
LLPS-Pes-1449
ENSPSIG00000017222.1
K7GGR8
SF3B1
71
LLPS-Pes-0302
ENSPSIG00000011494.1
K7FXU7
SFPQ
72
LLPS-Pes-0645
ENSPSIG00000008580.1
K7FP17
SNRNP200
73
LLPS-Pes-2505
ENSPSIG00000000450.1
K7EXE0
SNRNP35
74
LLPS-Pes-0184
ENSPSIG00000015251.1
K7GA95
SNRNP70
75
LLPS-Pes-1730
ENSPSIG00000015257.1
K7GA89
SNRPA
76
LLPS-Pes-1699
ENSPSIG00000013954.1
K7G5R0
SNRPA1
77
LLPS-Pes-0926
ENSPSIG00000014724.1
K7G8G5
SNRPB2
78
LLPS-Pes-0109
ENSPSIG00000004309.1
K7F9A1
SPOP
79
LLPS-Pes-2280
ENSPSIG00000013119.1
K7G2Y1
SRRM1
80
LLPS-Pes-0188
ENSPSIG00000005152.1
K7FC22
SRSF11
81
LLPS-Pes-0226
ENSPSIG00000002526.1
K7F3G8
SRSF3
82
LLPS-Pes-0855
ENSPSIG00000012522.1
K7G142
SRSF5
83
LLPS-Pes-0048
ENSPSIG00000011513.1
K7FXR1
SUMO1
84
LLPS-Pes-1457
ENSPSIG00000018059.1
K7GJF5
TGFBR1
85
LLPS-Pes-2147
ENSPSIG00000014097.1
K7G6A8
TRA2B
86
LLPS-Pes-0854
ENSPSIG00000009489.1
K7FR02
TTC14
87
LLPS-Pes-0321
ENSPSIG00000008014.1
K7FLK1
U2AF2
88
LLPS-Pes-0284
ENSPSIG00000016578.1
K7GEU1
U2SURP
89
LLPS-Pes-1709
ENSPSIG00000014457.1
K7G7S1
XPO1
90
LLPS-Pes-0498
ENSPSIG00000002782.1
K7F4B1
YTHDC1
91
LLPS-Pes-0635
ENSPSIG00000009117.1
K7FPU4
ZC3H11A
92
LLPS-Pes-3623
ENSPSIG00000018191.1
K7GJU5
ZNF131