Oryzias latipes      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 103 genes.  Reviewed (0 or Unreviewed (103

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Orl-0667
ENSORLG00000017510.2
H2MT00
2
LLPS-Orl-0698
ENSORLG00000010432.2
H2M3R3
3
LLPS-Orl-1127
ENSORLG00000015160.2
H2MJZ4
4
LLPS-Orl-1362
ENSORLG00000013183.2
H2MD84
5
LLPS-Orl-2978
ENSORLG00000026317.1
A0A3B3I5K6
6
LLPS-Orl-2079
ENSORLG00000015933.2
H2MMJ7
akap17a
7
LLPS-Orl-2440
ENSORLG00000012331.2
H2MA86
ALYREF
8
LLPS-Orl-2110
ENSORLG00000006213.2
H2LP30
arl6ip4
9
LLPS-Orl-1458
ENSORLG00000012184.2
H2M9Q9
atr
10
LLPS-Orl-1159
ENSORLG00000000287.2
A0A3B3I523
bcas2
11
LLPS-Orl-3366
ENSORLG00000011338.2
H2M6V3
c9h9orf78
12
LLPS-Orl-1497
ENSORLG00000017315.2
A0A3B3HM44
carm1
13
LLPS-Orl-0113
ENSORLG00000023125.1
A0A3B3IID2
casc3
14
LLPS-Orl-0051
ENSORLG00000012502.2
A0A3B3HTY3
ccnl1
15
LLPS-Orl-1953
ENSORLG00000018576.2
H2MWI0
cdc5l
16
LLPS-Orl-2492
ENSORLG00000019266.2
Q9DGD3
cdk1
17
LLPS-Orl-1265
ENSORLG00000008836.2
A0A3B3I852
cdk7
18
LLPS-Orl-0327
ENSORLG00000018273.2
H2MVN9
cdk9
19
LLPS-Orl-0319
ENSORLG00000016364.2
H2MP32
CDKL5 (1 of many)
20
LLPS-Orl-1247
ENSORLG00000013039.2
H2MCQ3
cop1
21
LLPS-Orl-3115
ENSORLG00000020637.2
A0A3B3H8H0
csnk1a1
22
LLPS-Orl-1361
ENSORLG00000000933.2
H2L5Q4
ctnnbl1
23
LLPS-Orl-0778
ENSORLG00000000903.3
A0A3B3IB01
ddx46
24
LLPS-Orl-0598
ENSORLG00000016956.2
H2MR37
dnajc17
25
LLPS-Orl-3120
ENSORLG00000020598.2
A0A3B3HR79
egf
26
LLPS-Orl-1301
ENSORLG00000004289.2
A0A3B3I3A5
ezh1
27
LLPS-Orl-3309
ENSORLG00000008459.3
A0A3B3I8U9
fam76b
28
LLPS-Orl-3179
ENSORLG00000029070.1
A0A3B3HK04
fam83h
29
LLPS-Orl-3359
ENSORLG00000011648.2
H2M7Z4
fanci
30
LLPS-Orl-2108
ENSORLG00000009288.2
H2LZS6
fbxl18
31
LLPS-Orl-3466
ENSORLG00000014206.2
H2MGT2
fgfr1
32
LLPS-Orl-3780
ENSORLG00000010763.2
H2M4X7
frmd8
33
LLPS-Orl-1931
ENSORLG00000009073.2
H2LZ06
fyttd1
34
LLPS-Orl-2191
ENSORLG00000012490.2
H2MAT4
gli3
35
LLPS-Orl-0622
ENSORLG00000015692.2
A0A3B3HMP9
hif1a
36
LLPS-Orl-4110
ENSORLG00000016085.2
A0A3B3IN38
hipk2
37
LLPS-Orl-2536
ENSORLG00000010955.2
H2M5K8
ilf2
38
LLPS-Orl-1694
ENSORLG00000016379.2
H2MP52
ilf3
39
LLPS-Orl-1067
ENSORLG00000009672.2
H2M156
ivns1abp
40
LLPS-Orl-0328
ENSORLG00000029824.1
A0A3B3IH33
LOC100049528
41
LLPS-Orl-1762
ENSORLG00000000746.2
H2L552
LOC101155211
42
LLPS-Orl-3000
ENSORLG00000004615.2
H2LIH8
LOC101156100
43
LLPS-Orl-1595
ENSORLG00000012412.2
H2MAH8
LOC101157503
44
LLPS-Orl-0061
ENSORLG00000004191.2
A0A3B3HFW9
LOC101158464
45
LLPS-Orl-2043
ENSORLG00000027099.1
A0A3B3HMI8
LOC101160561
46
LLPS-Orl-0682
ENSORLG00000001078.2
A0A3B3IHN2
LOC101162294
47
LLPS-Orl-1963
ENSORLG00000002563.2
H2LBC0
LOC101162379
48
LLPS-Orl-0120
ENSORLG00000004580.2
H2LID6
LOC101162697
49
LLPS-Orl-1217
ENSORLG00000006991.2
H2LRS9
LOC101163253
50
LLPS-Orl-3058
ENSORLG00000000279.2
H2L3M0
LOC101163463
51
LLPS-Orl-3852
ENSORLG00000007753.2
H2LUD4
LOC101163805
52
LLPS-Orl-2700
ENSORLG00000004232.3
H2LH46
LOC101167184
53
LLPS-Orl-0669
ENSORLG00000007609.2
H2LTW7
LOC101167451
54
LLPS-Orl-0621
ENSORLG00000004704.2
A0A3B3HAV6
LOC101167466
55
LLPS-Orl-0754
ENSORLG00000000292.2
A0A3B3HFQ0
LOC101168533
56
LLPS-Orl-1824
ENSORLG00000007102.2
H2LS52
LOC101168720
57
LLPS-Orl-1313
ENSORLG00000002207.2
H2LA44
LOC101169523
58
LLPS-Orl-0134
ENSORLG00000001642.2
A0A3B3I741
LOC101170539
59
LLPS-Orl-1225
ENSORLG00000005314.2
H2LKZ0
LOC101171767
60
LLPS-Orl-1599
ENSORLG00000000813.2
A0A3B3IE39
LOC101172571
61
LLPS-Orl-0156
ENSORLG00000028815.1
A0A3B3HC24
LOC101174968
62
LLPS-Orl-0067
ENSORLG00000008117.2
H2LVQ0
luc7l
63
LLPS-Orl-2733
ENSORLG00000005887.2
H2LMY5
nagk
64
LLPS-Orl-1321
ENSORLG00000009388.2
H2M047
nktr
65
LLPS-Orl-0775
ENSORLG00000012801.2
H2MBV1
nono
66
LLPS-Orl-1757
ENSORLG00000017307.2
A0A3B3HXD4
nosip
67
LLPS-Orl-1390
ENSORLG00000003135.2
H2LDA2
nsrp1
68
LLPS-Orl-0456
ENSORLG00000000229.2
A0A3B3I2J9
nuak2
69
LLPS-Orl-0392
ENSORLG00000010758.2
H2M4W6
ogg1
70
LLPS-Orl-3798
ENSORLG00000025320.1
A0A3B3I784
p2ry12
71
LLPS-Orl-0128
ENSORLG00000027900.1
A0A3B3I655
pabpn1
72
LLPS-Orl-2640
ENSORLG00000008305.2
H2LWD5
plrg1
73
LLPS-Orl-0294
ENSORLG00000004666.2
H2LIP3
prpf19
74
LLPS-Orl-1303
ENSORLG00000008036.2
A0A3B3HCW2
prpf8
75
LLPS-Orl-3822
ENSORLG00000010288.2
H2M390
psma3
76
LLPS-Orl-1000
ENSORLG00000011430.2
U6C5P8
ptbp1a
77
LLPS-Orl-2034
ENSORLG00000028798.1
A0A3B3IAL4
rbm17
78
LLPS-Orl-2439
ENSORLG00000009274.2
H2LZR1
rnf151
79
LLPS-Orl-1555
ENSORLG00000008033.2
A0A3B3I2W1
RNPS1
80
LLPS-Orl-2336
ENSORLG00000029565.1
A0A3B3HN51
sarnp
81
LLPS-Orl-0993
ENSORLG00000011853.2
H2M8M8
sf1
82
LLPS-Orl-1816
ENSORLG00000013050.2
H2MCR8
sf3a1
83
LLPS-Orl-1605
ENSORLG00000015301.2
H2MKF1
sf3a2
84
LLPS-Orl-0233
ENSORLG00000008175.2
H2LVY2
sf3a3
85
LLPS-Orl-0249
ENSORLG00000020219.2
H2N0Z3
sf3b1
86
LLPS-Orl-1203
ENSORLG00000007459.2
H2LTD3
sfpq
87
LLPS-Orl-0779
ENSORLG00000012286.2
H2MA31
snrnp200
88
LLPS-Orl-2703
ENSORLG00000005673.2
H2LM62
snrnp35
89
LLPS-Orl-1679
ENSORLG00000017158.2
A0A3B3H690
snrnp70
90
LLPS-Orl-2736
ENSORLG00000006536.2
A0A3B3I158
snrpa
91
LLPS-Orl-2306
ENSORLG00000019421.2
H2MYS1
snrpb2
92
LLPS-Orl-2407
ENSORLG00000027334.1
A0A3B3HQS8
son
93
LLPS-Orl-1515
ENSORLG00000005591.2
H2LLW4
SPOP
94
LLPS-Orl-2543
ENSORLG00000007691.2
H2LU61
srsf10
95
LLPS-Orl-0386
ENSORLG00000004061.2
H2LGJ1
stat3
96
LLPS-Orl-1576
ENSORLG00000000622.2
C9E6G0
SUMO1
97
LLPS-Orl-0581
ENSORLG00000016158.2
H2MNB9
tap1
98
LLPS-Orl-0917
ENSORLG00000013780.2
H2MFB1
tra2a
99
LLPS-Orl-0040
ENSORLG00000011825.3
A0A3B3I0U1
ttc14
100
LLPS-Orl-1166
ENSORLG00000011545.2
H2M7K7
u2af2
101
LLPS-Orl-0528
ENSORLG00000010235.3
A0A3B3I5Y7
u2surp
102
LLPS-Orl-1551
ENSORLG00000030544.1
A0A3B3IAV4
ythdc1
103
LLPS-Orl-3298
ENSORLG00000004007.2
A0A3B3II66
znf131