Monodelphis domestica      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 105 genes.  Reviewed (0 or Unreviewed (105

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Mod-0420
ENSMODG00000017091.2
F6V3X3
2
LLPS-Mod-0906
ENSMODG00000014781.3
F7G6X8
3
LLPS-Mod-0978
ENSMODG00000024045.1
F6YNL2
4
LLPS-Mod-1389
ENSMODG00000000082.3
F6QSW2
5
LLPS-Mod-1639
ENSMODG00000028949.1
K7E559
6
LLPS-Mod-1731
ENSMODG00000001575.3
F7E661
7
LLPS-Mod-1832
ENSMODG00000012002.2
F7B8Y1
8
LLPS-Mod-1853
ENSMODG00000013748.3
F6X7K6
9
LLPS-Mod-2021
ENSMODG00000002714.3
H9H612
10
LLPS-Mod-2314
ENSMODG00000013020.3
F7BP58
11
LLPS-Mod-2786
ENSMODG00000021242.3
F7ACV6
12
LLPS-Mod-3827
ENSMODG00000004535.3
F6U9B0
13
LLPS-Mod-4378
ENSMODG00000014379.2
F6PYN9
14
LLPS-Mod-2020
ENSMODG00000000748.3
F6VPM9
AGO2
15
LLPS-Mod-1320
ENSMODG00000003030.3
F6Q1W2
ALYREF
16
LLPS-Mod-1884
ENSMODG00000002499.3
F7B9R9
ANXA10
17
LLPS-Mod-0099
ENSMODG00000011604.3
F6UHK2
ANXA2
18
LLPS-Mod-2874
ENSMODG00000021237.3
F6TZV8
ATR
19
LLPS-Mod-2322
ENSMODG00000000367.2
F6R986
BCAS2
20
LLPS-Mod-3178
ENSMODG00000006832.2
F6PG42
C9orf78
21
LLPS-Mod-3268
ENSMODG00000006104.3
F7AJN8
CARM1
22
LLPS-Mod-2025
ENSMODG00000013044.4
F7G173
CASC3
23
LLPS-Mod-3465
ENSMODG00000015703.3
F7DGG8
CCNL1
24
LLPS-Mod-1147
ENSMODG00000018923.3
F7GJW1
CDC5L
25
LLPS-Mod-1649
ENSMODG00000019702.2
F6TC82
CDK7
26
LLPS-Mod-1935
ENSMODG00000005552.3
F7FH38
CDK9
27
LLPS-Mod-4276
ENSMODG00000017140.3
F6TMQ0
CDKL5
28
LLPS-Mod-0842
ENSMODG00000017066.3
F7E1N3
CLK2
29
LLPS-Mod-0847
ENSMODG00000005579.3
F7E513
COP1
30
LLPS-Mod-0266
ENSMODG00000009937.3
F6R812
CSNK1A1
31
LLPS-Mod-0075
ENSMODG00000000226.3
F6SZ07
CTNNBL1
32
LLPS-Mod-1745
ENSMODG00000015791.2
F7FS41
DDX39B
33
LLPS-Mod-0116
ENSMODG00000014331.4
F6ULL3
DDX46
34
LLPS-Mod-2008
ENSMODG00000010334.3
F6S9G8
DGCR8
35
LLPS-Mod-3061
ENSMODG00000005870.3
F6R392
EGF
36
LLPS-Mod-2644
ENSMODG00000010274.3
F6VPB7
ERH
37
LLPS-Mod-1190
ENSMODG00000015033.3
F7BXB4
EZH1
38
LLPS-Mod-0386
ENSMODG00000000139.3
F6Z450
FAM76B
39
LLPS-Mod-2277
ENSMODG00000009062.4
F7FR20
FAM83H
40
LLPS-Mod-2382
ENSMODG00000005440.3
F6ZUP5
FANCD2
41
LLPS-Mod-3395
ENSMODG00000019568.3
F6R898
FANCI
42
LLPS-Mod-2919
ENSMODG00000000999.3
F7EA27
FBXL18
43
LLPS-Mod-2903
ENSMODG00000010647.2
F6TVE0
FGFR1
44
LLPS-Mod-3389
ENSMODG00000009777.3
F6TF58
FRMD8
45
LLPS-Mod-0316
ENSMODG00000001889.3
F6WGL5
FUS
46
LLPS-Mod-1631
ENSMODG00000018393.3
F6QAE2
FYTTD1
47
LLPS-Mod-0232
ENSMODG00000018216.3
F6PGQ1
GSK3B
48
LLPS-Mod-1374
ENSMODG00000008760.3
F6RGY6
HIF1A
49
LLPS-Mod-2341
ENSMODG00000013733.3
F6XQH8
HIPK2
50
LLPS-Mod-0382
ENSMODG00000000603.3
F6TBC0
HNRNPA2B1
51
LLPS-Mod-1177
ENSMODG00000008402.3
F7BUQ2
HNRNPK
52
LLPS-Mod-0303
ENSMODG00000009347.3
F7G0C3
HSPH1
53
LLPS-Mod-2344
ENSMODG00000017376.2
F6VIB3
ILF2
54
LLPS-Mod-0193
ENSMODG00000005911.3
F6XCW7
ILF3
55
LLPS-Mod-0676
ENSMODG00000007568.3
F7FPI6
IVNS1ABP
56
LLPS-Mod-0107
ENSMODG00000003897.2
F7D853
KPNA2
57
LLPS-Mod-0997
ENSMODG00000016644.3
F7GGT7
LUC7L
58
LLPS-Mod-2960
ENSMODG00000011200.2
F6SQY0
NAGK
59
LLPS-Mod-0490
ENSMODG00000004445.2
F6RSW7
NONO
60
LLPS-Mod-3140
ENSMODG00000013629.3
F6UWQ9
NOSIP
61
LLPS-Mod-3588
ENSMODG00000019746.2
F6WNR0
NR5A1
62
LLPS-Mod-2789
ENSMODG00000009868.4
F6VV70
NSRP1
63
LLPS-Mod-2157
ENSMODG00000005099.1
F6ZEE7
OGG1
64
LLPS-Mod-4028
ENSMODG00000024766.1
F7DAY4
P2RY12
65
LLPS-Mod-1170
ENSMODG00000001215.3
F7G7S0
PLRG1
66
LLPS-Mod-0951
ENSMODG00000011926.4
F7DZE3
PNN
67
LLPS-Mod-3203
ENSMODG00000008110.3
F7G5I4
PPIG
68
LLPS-Mod-0885
ENSMODG00000020338.3
F7FWM2
PRPF19
69
LLPS-Mod-0440
ENSMODG00000010480.4
F7ESJ6
PRPF8
70
LLPS-Mod-0955
ENSMODG00000007839.3
F7ETB2
PSMA3
71
LLPS-Mod-0664
ENSMODG00000008029.3
F7CKP3
PSPC1
72
LLPS-Mod-3211
ENSMODG00000006302.3
F7BRN9
PTBP1
73
LLPS-Mod-2710
ENSMODG00000012492.3
F6QKH4
RAPGEF1
74
LLPS-Mod-1363
ENSMODG00000016648.3
F7GGT5
RBM17
75
LLPS-Mod-2287
ENSMODG00000024448.3
F7CF56
RBM23
76
LLPS-Mod-4321
ENSMODG00000016093.1
F7FYT8
RNF151
77
LLPS-Mod-2900
ENSMODG00000015891.2
F7B375
RNPS1
78
LLPS-Mod-0150
ENSMODG00000029407.1
K7DZ88
SF1
79
LLPS-Mod-1153
ENSMODG00000009270.3
F7DA32
SF3A1
80
LLPS-Mod-1304
ENSMODG00000004681.3
F6U6H6
SF3A2
81
LLPS-Mod-2933
ENSMODG00000012275.3
F6YFZ8
SF3B1
82
LLPS-Mod-1073
ENSMODG00000017937.4
F7E3U7
SFPQ
83
LLPS-Mod-0848
ENSMODG00000009609.3
F6S0M0
SMAD3
84
LLPS-Mod-0258
ENSMODG00000008475.3
F7G4E6
SNRNP200
85
LLPS-Mod-0056
ENSMODG00000012481.2
F6Q400
SNRNP35
86
LLPS-Mod-1513
ENSMODG00000007912.1
F7GII6
SNRPA
87
LLPS-Mod-1383
ENSMODG00000012020.3
F7AM15
SNRPA1
88
LLPS-Mod-2853
ENSMODG00000005392.3
F6SJ33
SNRPB2
89
LLPS-Mod-0690
ENSMODG00000021061.4
F6YM38
SON
90
LLPS-Mod-1339
ENSMODG00000016533.4
F7E855
SRRM2
91
LLPS-Mod-3718
ENSMODG00000000559.3
F6X514
SRSF11
92
LLPS-Mod-1887
ENSMODG00000013539.3
F7CM23
SRSF3
93
LLPS-Mod-0084
ENSMODG00000011052.3
F7EMN8
SRSF4
94
LLPS-Mod-1465
ENSMODG00000008669.3
F6PFZ6
SRSF7
95
LLPS-Mod-0391
ENSMODG00000003146.2
F6WU16
SRSF9
96
LLPS-Mod-0940
ENSMODG00000028212.1
F7BYN4
STAT3
97
LLPS-Mod-0306
ENSMODG00000016299.3
F7ATG0
SUMO1
98
LLPS-Mod-3213
ENSMODG00000012679.3
F6VGC3
TGFBR1
99
LLPS-Mod-2537
ENSMODG00000013248.4
F7DUM8
TRA2B
100
LLPS-Mod-1967
ENSMODG00000021296.3
F7G3U9
TTC14
101
LLPS-Mod-0723
ENSMODG00000002831.2
F7EIW1
XPO1
102
LLPS-Mod-2421
ENSMODG00000020754.3
F6RD50
YTHDC1
103
LLPS-Mod-1306
ENSMODG00000001184.3
F7GHC1
ZC3H11A
104
LLPS-Mod-0722
ENSMODG00000017900.4
F7FGF7
ZNF106
105
LLPS-Mod-3686
ENSMODG00000020281.5
F7C0G0
ZNF131