Microbotryum violaceum      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 35 genes.  Reviewed (0 or Unreviewed (35

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Miv-1572
MVLG_00106
U5GY34
MVLG_00106
2
LLPS-Miv-0823
MVLG_00575
U5GZH3
MVLG_00575
3
LLPS-Miv-0324
MVLG_00709
U5GZW4
MVLG_00709
4
LLPS-Miv-0581
MVLG_00827
U5H090
MVLG_00827
5
LLPS-Miv-1046
MVLG_01083
U5H118
MVLG_01083
6
LLPS-Miv-1099
MVLG_01135
U5H174
MVLG_01135
7
LLPS-Miv-0449
MVLG_01190
U5H1D3
MVLG_01190
8
LLPS-Miv-0599
MVLG_01552
U5H2G6
MVLG_01552
9
LLPS-Miv-1023
MVLG_01753
U5H326
MVLG_01753
10
LLPS-Miv-1030
MVLG_01887
U5H3H1
MVLG_01887
11
LLPS-Miv-0058
MVLG_02042
U5H3Y9
MVLG_02042
12
LLPS-Miv-0962
MVLG_02098
U5H450
MVLG_02098
13
LLPS-Miv-0781
MVLG_02304
U5H4R7
MVLG_02304
14
LLPS-Miv-0220
MVLG_02456
U5H579
MVLG_02456
15
LLPS-Miv-0639
MVLG_02544
U5H5H2
MVLG_02544
16
LLPS-Miv-0276
MVLG_03117
U5H778
MVLG_03117
17
LLPS-Miv-1266
MVLG_03201
U5H7H0
MVLG_03201
18
LLPS-Miv-1035
MVLG_03555
U5H8J8
MVLG_03555
19
LLPS-Miv-0343
MVLG_03690
U5H8Z5
MVLG_03690
20
LLPS-Miv-0748
MVLG_03957
U5H9R8
MVLG_03957
21
LLPS-Miv-0656
MVLG_03982
U5H9U4
MVLG_03982
22
LLPS-Miv-0675
MVLG_03990
U5H9V2
MVLG_03990
23
LLPS-Miv-1452
MVLG_04065
U5HA30
MVLG_04065
24
LLPS-Miv-0915
MVLG_04504
U5HBF3
MVLG_04504
25
LLPS-Miv-0492
MVLG_04772
U5HC85
MVLG_04772
26
LLPS-Miv-0982
MVLG_04909
U5HCM8
MVLG_04909
27
LLPS-Miv-0986
MVLG_05246
U5HDN5
MVLG_05246
28
LLPS-Miv-0435
MVLG_05270
U5HDR3
MVLG_05270
29
LLPS-Miv-0106
MVLG_05797
U5HFB9
MVLG_05797
30
LLPS-Miv-0653
MVLG_05811
U5HFD4
MVLG_05811
31
LLPS-Miv-1185
MVLG_06102
U5HG89
MVLG_06102
32
LLPS-Miv-0682
MVLG_06103
U5HG90
MVLG_06103
33
LLPS-Miv-1100
MVLG_06397
U5HH57
MVLG_06397
34
LLPS-Miv-1022
MVLG_06579
U5HHQ3
MVLG_06579
35
LLPS-Miv-0411
MVLG_06591
U5HHR5
MVLG_06591