Leersia perrieri      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 53 genes.  Reviewed (0 or Unreviewed (53

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Lep-0016
LPERR03G16450
A0A0D9VUH5
2
LLPS-Lep-0040
LPERR10G00540
A0A0D9XHC5
3
LLPS-Lep-0042
LPERR02G08710
A0A0D9VE73
4
LLPS-Lep-0113
LPERR05G12140
A0A0D9WG57
5
LLPS-Lep-0134
LPERR04G06950
A0A0D9W442
6
LLPS-Lep-0136
LPERR04G24660
A0A0D9WAZ7
7
LLPS-Lep-0175
LPERR06G04030
A0A0D9WMB2
8
LLPS-Lep-0192
LPERR02G16250
A0A0D9VGZ8
9
LLPS-Lep-0198
LPERR08G03590
A0A0D9X4N0
10
LLPS-Lep-0251
LPERR03G33640
A0A0D9W0X2
11
LLPS-Lep-0255
LPERR02G03230
A0A0D9VC62
12
LLPS-Lep-0290
LPERR02G27960
A0A0D9VLK0
13
LLPS-Lep-0316
LPERR02G00530
A0A0D9VB63
14
LLPS-Lep-0389
LPERR03G35580
A0A0D9W1M0
15
LLPS-Lep-0402
LPERR09G00130
A0A0D9XB41
16
LLPS-Lep-0429
LPERR07G22830
A0A0D9X2U2
17
LLPS-Lep-0446
LPERR01G15800
A0A0D9V1M8
18
LLPS-Lep-0504
LPERR03G11070
A0A0D9VSJ4
19
LLPS-Lep-0509
LPERR04G05540
A0A0D9W3M3
20
LLPS-Lep-0539
LPERR03G14560
A0A0D9VTT4
21
LLPS-Lep-0543
LPERR11G16990
A0A0D9XUG8
22
LLPS-Lep-0612
LPERR02G31800
A0A0D9VN33
23
LLPS-Lep-0631
LPERR04G10340
A0A0D9W5A3
24
LLPS-Lep-0708
LPERR04G20300
A0A0D9W978
25
LLPS-Lep-0710
LPERR05G05700
A0A0D9WDT3
26
LLPS-Lep-0731
LPERR02G27170
A0A0D9VL98
27
LLPS-Lep-0739
LPERR02G09160
A0A0D9VEC4
28
LLPS-Lep-0794
LPERR02G19370
A0A0D9VI74
29
LLPS-Lep-0861
LPERR05G10750
A0A0D9WFN7
30
LLPS-Lep-0920
LPERR03G15870
A0A0D9VUA1
31
LLPS-Lep-0927
LPERR03G10680
A0A0D9VSE6
32
LLPS-Lep-1066
LPERR07G04450
A0A0D9WW57
33
LLPS-Lep-1243
LPERR06G23290
A0A0D9WU94
34
LLPS-Lep-1246
LPERR09G12340
A0A0D9XFK4
35
LLPS-Lep-1254
LPERR06G09370
A0A0D9WP75
36
LLPS-Lep-1283
LPERR06G01410
A0A0D9WLA2
37
LLPS-Lep-1311
LPERR05G16940
A0A0D9WI04
38
LLPS-Lep-1369
LPERR10G09240
A0A0D9XKF0
39
LLPS-Lep-1386
LPERR01G09770
A0A0D9UZC5
40
LLPS-Lep-1388
LPERR03G10230
A0A0D9VS84
41
LLPS-Lep-1400
LPERR03G11220
A0A0D9VSL1
42
LLPS-Lep-1466
LPERR07G19700
A0A0D9X1N5
43
LLPS-Lep-1518
LPERR03G24530
A0A0D9VXH4
44
LLPS-Lep-1578
LPERR09G09130
A0A0D9XEG2
45
LLPS-Lep-1654
LPERR07G03060
A0A0D9WVL7
46
LLPS-Lep-1666
LPERR03G26650
A0A0D9VY87
47
LLPS-Lep-1670
LPERR07G22740
A0A0D9X2S8
48
LLPS-Lep-1853
LPERR02G05330
A0A0D9VCY6
49
LLPS-Lep-1960
LPERR01G18150
A0A0D9V2G0
50
LLPS-Lep-1971
LPERR03G25720
A0A0D9VXX3
51
LLPS-Lep-2312
LPERR01G38970
A0A0D9VAI8
52
LLPS-Lep-2319
LPERR03G14700
A0A0D9VTV0
53
LLPS-Lep-2362
LPERR03G10380
A0A0D9VSA0