Latimeria chalumnae      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 101 genes.  Reviewed (0 or Unreviewed (101

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Lac-3813
ENSLACG00000002187.1
H2ZYH9
2
LLPS-Lac-2465
ENSLACG00000001277.1
H2ZVK6
AGO2
3
LLPS-Lac-2647
ENSLACG00000015016.2
H3B576
AKAP17A
4
LLPS-Lac-3917
ENSLACG00000005694.2
H3A9U6
ALYREF
5
LLPS-Lac-0442
ENSLACG00000017285.1
H3BCN8
ANXA10
6
LLPS-Lac-0367
ENSLACG00000017614.2
H3BDR7
ANXA2
7
LLPS-Lac-0844
ENSLACG00000017714.1
H3BE34
ARL6IP4
8
LLPS-Lac-0466
ENSLACG00000009886.1
H3ANL6
ATR
9
LLPS-Lac-0235
ENSLACG00000018369.1
H3BG84
BCAS2
10
LLPS-Lac-2601
ENSLACG00000006036.1
H3AAY1
C9orf78
11
LLPS-Lac-3083
ENSLACG00000015696.1
H3B7F0
CARM1
12
LLPS-Lac-0850
ENSLACG00000013200.1
H3AZC7
CASC3
13
LLPS-Lac-0856
ENSLACG00000013133.1
H3AZ52
CCNL1
14
LLPS-Lac-2321
ENSLACG00000008060.2
H3AHL0
CDC5L
15
LLPS-Lac-0284
ENSLACG00000022150.1
M3XH50
CDK1
16
LLPS-Lac-0143
ENSLACG00000016088.1
H3B8P3
CDK7
17
LLPS-Lac-0113
ENSLACG00000017060.1
H3BBX6
CDK9
18
LLPS-Lac-4036
ENSLACG00000008468.2
H3AIY0
CDKL5
19
LLPS-Lac-0252
ENSLACG00000011141.2
H3ASM4
COP1
20
LLPS-Lac-3835
ENSLACG00000008673.1
H3AJL4
CSNK1A1
21
LLPS-Lac-0976
ENSLACG00000004941.1
H3A7D7
CTNNBL1
22
LLPS-Lac-0429
ENSLACG00000002110.1
H2ZY90
DDX39B
23
LLPS-Lac-0463
ENSLACG00000007965.2
H3AHA1
DDX46
24
LLPS-Lac-2229
ENSLACG00000001434.1
H2ZW35
DNAJB1
25
LLPS-Lac-1989
ENSLACG00000016126.1
H3B8T5
DNAJC17
26
LLPS-Lac-0142
ENSLACG00000002125.2
H2ZYA7
ERH
27
LLPS-Lac-1096
ENSLACG00000008459.2
H3AIX2
FAM76B
28
LLPS-Lac-0942
ENSLACG00000012784.1
H3AY05
FAM83H
29
LLPS-Lac-2866
ENSLACG00000018105.1
H3BFD2
FANCD2
30
LLPS-Lac-2148
ENSLACG00000017786.1
H3BEB6
FANCI
31
LLPS-Lac-1489
ENSLACG00000017111.2
H3BC33
FBXL18
32
LLPS-Lac-3542
ENSLACG00000013549.1
H3B0H1
FGFR1
33
LLPS-Lac-3337
ENSLACG00000018256.1
H3BFW2
FRMD8
34
LLPS-Lac-1227
ENSLACG00000004570.1
H3A671
FUS
35
LLPS-Lac-2565
ENSLACG00000006864.1
H3ADM8
FYTTD1
36
LLPS-Lac-1942
ENSLACG00000003758.1
H3A3K3
GLI3
37
LLPS-Lac-0178
ENSLACG00000011303.2
H3AT64
GSK3B
38
LLPS-Lac-2249
ENSLACG00000018272.1
H3BFY0
HIF1A
39
LLPS-Lac-0282
ENSLACG00000015127.1
H3B5J9
HIPK2
40
LLPS-Lac-1966
ENSLACG00000013754.2
H3B152
HNRNPA1
41
LLPS-Lac-2299
ENSLACG00000013590.1
H3B0L4
HNRNPA2B1
42
LLPS-Lac-2142
ENSLACG00000005638.1
H3A9N4
HNRNPK
43
LLPS-Lac-2258
ENSLACG00000007384.1
H3AFC2
ILF2
44
LLPS-Lac-0072
ENSLACG00000003810.2
H3A3R0
ILF3
45
LLPS-Lac-2814
ENSLACG00000010793.1
H3ARJ0
IVNS1ABP
46
LLPS-Lac-0280
ENSLACG00000013531.2
H3B0E6
KPNA7
47
LLPS-Lac-0404
ENSLACG00000001958.2
H2ZXS0
LOC102346605
48
LLPS-Lac-0190
ENSLACG00000014109.1
H3B2A1
LOC102350007
49
LLPS-Lac-1938
ENSLACG00000013290.1
H3AZN1
LUC7L
50
LLPS-Lac-3649
ENSLACG00000017001.1
H3BBQ8
NAGK
51
LLPS-Lac-0907
ENSLACG00000000598.1
H2ZTE9
NONO
52
LLPS-Lac-0518
ENSLACG00000016760.2
H3BAX6
NOSIP
53
LLPS-Lac-2446
ENSLACG00000014674.1
H3B438
NSRP1
54
LLPS-Lac-2699
ENSLACG00000009120.1
H3AL34
NUAK2
55
LLPS-Lac-2201
ENSLACG00000006848.1
H3ADL3
P2RY12
56
LLPS-Lac-2818
ENSLACG00000000646.1
H2ZTK0
PABPN1
57
LLPS-Lac-2364
ENSLACG00000000924.2
H2ZUG2
PLRG1
58
LLPS-Lac-3493
ENSLACG00000005539.1
H3A9C4
PNN
59
LLPS-Lac-1783
ENSLACG00000012802.1
H3AY26
PPIG
60
LLPS-Lac-1231
ENSLACG00000003434.1
H3A2I6
PRPF19
61
LLPS-Lac-2754
ENSLACG00000010479.1
H3AQI5
PRPF8
62
LLPS-Lac-0146
ENSLACG00000018893.1
H3BHX9
PSMA3
63
LLPS-Lac-0667
ENSLACG00000010762.2
H3ARF5
PSPC1
64
LLPS-Lac-0574
ENSLACG00000003632.2
H3A365
PTBP1
65
LLPS-Lac-3061
ENSLACG00000017553.1
H3BDJ7
RAPGEF1
66
LLPS-Lac-2259
ENSLACG00000017297.1
H3BCQ2
RBM17
67
LLPS-Lac-0740
ENSLACG00000006906.1
H3ADS7
RBMX2
68
LLPS-Lac-0187
ENSLACG00000007112.1
H3AEG6
RNPS1
69
LLPS-Lac-0563
ENSLACG00000018719.1
H3BHD1
SARNP
70
LLPS-Lac-0597
ENSLACG00000018493.1
H3BGM9
SF1
71
LLPS-Lac-2437
ENSLACG00000003565.1
H3A2Y2
SF3A1
72
LLPS-Lac-0154
ENSLACG00000008744.1
H3AJU8
SF3A2
73
LLPS-Lac-1357
ENSLACG00000007861.1
H3AGY0
SF3A3
74
LLPS-Lac-0957
ENSLACG00000014832.1
H3B4L8
SF3B1
75
LLPS-Lac-0188
ENSLACG00000014728.2
H3B498
SFPQ
76
LLPS-Lac-0275
ENSLACG00000000226.1
H2ZS81
SNRNP200
77
LLPS-Lac-3862
ENSLACG00000017176.1
H3BCB2
SNRNP35
78
LLPS-Lac-0300
ENSLACG00000015684.1
H3B7D5
SNRNP70
79
LLPS-Lac-2672
ENSLACG00000017723.1
H3BE43
SNRPA
80
LLPS-Lac-0670
ENSLACG00000018217.1
H3BFR2
SNRPA1
81
LLPS-Lac-0673
ENSLACG00000007386.1
H3AFC4
SNRPB2
82
LLPS-Lac-1733
ENSLACG00000013385.1
H3AZY3
SON
83
LLPS-Lac-0725
ENSLACG00000007328.2
H3AF59
SPOP
84
LLPS-Lac-0910
ENSLACG00000013065.1
H3AYX0
SRRM2
85
LLPS-Lac-2460
ENSLACG00000014160.1
H3B2F5
SRSF1
86
LLPS-Lac-2740
ENSLACG00000006575.1
H3ACP5
SRSF11
87
LLPS-Lac-0009
ENSLACG00000013394.2
H3AZZ3
SRSF2
88
LLPS-Lac-1992
ENSLACG00000008131.2
H3AHU1
SRSF3
89
LLPS-Lac-0683
ENSLACG00000004052.1
H3A4I0
SRSF7
90
LLPS-Lac-1844
ENSLACG00000018228.2
H3BFS9
SRSF9
91
LLPS-Lac-0641
ENSLACG00000012019.1
H3AVI5
STAT3
92
LLPS-Lac-0260
ENSLACG00000007257.1
H3AEX6
TGFBR1
93
LLPS-Lac-0091
ENSLACG00000013348.1
H3AZU0
TRA2B
94
LLPS-Lac-3721
ENSLACG00000012412.1
H3AWT1
TTC14
95
LLPS-Lac-0643
ENSLACG00000001648.2
H2ZWS6
U2AF2
96
LLPS-Lac-3116
ENSLACG00000012318.1
H3AWH0
U2SURP
97
LLPS-Lac-2599
ENSLACG00000018213.1
H3BFQ8
XPO1
98
LLPS-Lac-0495
ENSLACG00000004893.1
H3A783
YTHDC1
99
LLPS-Lac-1205
ENSLACG00000012741.2
H3AXV9
ZC3H11A
100
LLPS-Lac-3718
ENSLACG00000012300.1
H3AWE8
ZNF106
101
LLPS-Lac-1967
ENSLACG00000001147.1
H2ZV58
ZNF131