Fusarium verticillioides      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 28 genes.  Reviewed (0 or Unreviewed (28

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Fuv-0756
FVEG_01005
W7LFP7
FVEG_01005
2
LLPS-Fuv-0723
FVEG_01022
W7LFR7
FVEG_01022
3
LLPS-Fuv-1431
FVEG_01075
W7LDH0
FVEG_01075
4
LLPS-Fuv-1181
FVEG_01224
W7LQB7
FVEG_01224
5
LLPS-Fuv-1470
FVEG_01315
W7LZ94
FVEG_01315
6
LLPS-Fuv-0310
FVEG_01338
W7LR52
FVEG_01338
7
LLPS-Fuv-0656
FVEG_01469
W7LFE1
FVEG_01469
8
LLPS-Fuv-0860
FVEG_02212
W7LLI7
FVEG_02212
9
LLPS-Fuv-0847
FVEG_02540
W7LWR1
FVEG_02540
10
LLPS-Fuv-0118
FVEG_02621
W7LKX9
FVEG_02621
11
LLPS-Fuv-1186
FVEG_02810
W7LPJ4
FVEG_02810
12
LLPS-Fuv-0221
FVEG_02944
W7LQ19
FVEG_02944
13
LLPS-Fuv-0933
FVEG_03939
W7M373
FVEG_03939
14
LLPS-Fuv-0223
FVEG_04224
W7M4H1
FVEG_04224
15
LLPS-Fuv-0904
FVEG_04472
W7MD51
FVEG_04472
16
LLPS-Fuv-0937
FVEG_05335
W7M9S9
FVEG_05335
17
LLPS-Fuv-1221
FVEG_05403
W7MHK9
FVEG_05403
18
LLPS-Fuv-0942
FVEG_06421
W7MDR2
FVEG_06421
19
LLPS-Fuv-1045
FVEG_07138
W7MGT6
FVEG_07138
20
LLPS-Fuv-0993
FVEG_07224
W7M7J7
FVEG_07224
21
LLPS-Fuv-0797
FVEG_07936
W7M8S7
FVEG_07936
22
LLPS-Fuv-0159
FVEG_08126
W7MBB2
FVEG_08126
23
LLPS-Fuv-0336
FVEG_08127
W7M9P3
FVEG_08127
24
LLPS-Fuv-0615
FVEG_08128
W7MKK6
FVEG_08128
25
LLPS-Fuv-0370
FVEG_08995
W7MEW9
FVEG_08995
26
LLPS-Fuv-0362
FVEG_09212
W7MPY9
FVEG_09212
27
LLPS-Fuv-0965
FVEG_09289
W7MQN7
FVEG_09289
28
LLPS-Fuv-0489
FVEG_11574
W7MNN7
FVEG_11574