Daucus carota      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 50 genes.  Reviewed (0 or Unreviewed (50

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Dac-0682
DCAR_000480
A0A175Y8G0
DCAR_000480
2
LLPS-Dac-1254
DCAR_000686
A0A166FP77
DCAR_000686
3
LLPS-Dac-0122
DCAR_000720
A0A166FQ78
DCAR_000720
4
LLPS-Dac-1993
DCAR_000889
A0A162B070
DCAR_000889
5
LLPS-Dac-0904
DCAR_002302
A0A162AIM1
DCAR_002302
6
LLPS-Dac-1842
DCAR_002696
A0A166HBF3
DCAR_002696
7
LLPS-Dac-1416
DCAR_002946
A0A166HR44
DCAR_002946
8
LLPS-Dac-0213
DCAR_003081
A0A166HV25
DCAR_003081
9
LLPS-Dac-0645
DCAR_003396
A0A166I4M9
DCAR_003396
10
LLPS-Dac-1869
DCAR_003399
A0A162B6U2
DCAR_003399
11
LLPS-Dac-2062
DCAR_003497
A0A166I7Z2
DCAR_003497
12
LLPS-Dac-1567
DCAR_004161
A0A166IUI1
DCAR_004161
13
LLPS-Dac-1465
DCAR_004512
A0A166J6U4
DCAR_004512
14
LLPS-Dac-0183
DCAR_004521
A0A166J746
DCAR_004521
15
LLPS-Dac-0926
DCAR_005314
A0A161Y590
DCAR_005314
16
LLPS-Dac-0637
DCAR_006644
A0A166DXL2
DCAR_006644
17
LLPS-Dac-1446
DCAR_007383
A0A166EGU2
DCAR_007383
18
LLPS-Dac-1814
DCAR_007401
A0A166EH95
DCAR_007401
19
LLPS-Dac-0508
DCAR_007453
A0A166EIJ1
DCAR_007453
20
LLPS-Dac-0746
DCAR_007839
A0A166EUP3
DCAR_007839
21
LLPS-Dac-1358
DCAR_008421
A0A166FBC7
DCAR_008421
22
LLPS-Dac-0802
DCAR_008506
A0A161XK71
DCAR_008506
23
LLPS-Dac-0374
DCAR_008606
A0A161XKH3
DCAR_008606
24
LLPS-Dac-1995
DCAR_009017
A0A162AF92
DCAR_009017
25
LLPS-Dac-1673
DCAR_010878
A0A166AYV6
DCAR_010878
26
LLPS-Dac-1216
DCAR_011379
A0A161WV94
DCAR_011379
27
LLPS-Dac-0432
DCAR_011381
A0A161Y0H3
DCAR_011381
28
LLPS-Dac-1069
DCAR_013514
A0A165YIX7
DCAR_013514
29
LLPS-Dac-2365
DCAR_014648
A0A162AAK1
DCAR_014648
30
LLPS-Dac-0636
DCAR_014858
A0A162AA38
DCAR_014858
31
LLPS-Dac-0505
DCAR_017245
A0A162A276
DCAR_017245
32
LLPS-Dac-1664
DCAR_018237
A0A164YW87
DCAR_018237
33
LLPS-Dac-0923
DCAR_018256
A0A164YWV1
DCAR_018256
34
LLPS-Dac-2198
DCAR_018340
A0A164YZN9
DCAR_018340
35
LLPS-Dac-0434
DCAR_020404
A0A164WTK5
DCAR_020404
36
LLPS-Dac-0563
DCAR_020804
A0A164WIU8
DCAR_020804
37
LLPS-Dac-1227
DCAR_021388
A0A164W3T2
DCAR_021388
38
LLPS-Dac-1061
DCAR_022421
A0A164VE58
DCAR_022421
39
LLPS-Dac-1005
DCAR_022799
A0A164V5J6
DCAR_022799
40
LLPS-Dac-0643
DCAR_023095
A0A161ZPN3
DCAR_023095
41
LLPS-Dac-1907
DCAR_024291
A0A164T7D5
DCAR_024291
42
LLPS-Dac-1343
DCAR_025503
A0A164U4U1
DCAR_025503
43
LLPS-Dac-0895
DCAR_025515
A0A161ZPU5
DCAR_025515
44
LLPS-Dac-0060
DCAR_025922
A0A164UG90
DCAR_025922
45
LLPS-Dac-0507
DCAR_025929
A0A164UGC3
DCAR_025929
46
LLPS-Dac-0100
DCAR_026599
A0A175YQS7
DCAR_026599
47
LLPS-Dac-1148
DCAR_027058
A0A175YQL0
DCAR_027058
48
LLPS-Dac-2085
DCAR_027075
A0A175YPX8
DCAR_027075
49
LLPS-Dac-1970
DCAR_027864
A0A175YLW9
DCAR_027864
50
LLPS-Dac-1517
DCAR_029392
A0A175YDR8
DCAR_029392