Ciona intestinalis      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 68 genes.  Reviewed (0 or Unreviewed (68

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Cii-0008
ENSCING00000001081.3
F7B0F3
2
LLPS-Cii-0069
ENSCING00000010918.3
F6TL19
3
LLPS-Cii-0159
ENSCING00000022087.1
H2Y3Q2
4
LLPS-Cii-0182
ENSCING00000013568.2
F6YBL5
5
LLPS-Cii-0227
ENSCING00000008131.3
F6W2K7
6
LLPS-Cii-0299
ENSCING00000004050.3
F6RWR9
7
LLPS-Cii-0308
ENSCING00000008526.3
F7AI93
8
LLPS-Cii-0421
ENSCING00000007049.2
F6ZBX8
9
LLPS-Cii-0431
ENSCING00000022911.1
H2XRG4
10
LLPS-Cii-0468
ENSCING00000000643.3
F6RKI1
11
LLPS-Cii-0483
ENSCING00000020168.1
H2Y1J7
12
LLPS-Cii-0655
ENSCING00000021005.1
H2XVD0
13
LLPS-Cii-0763
ENSCING00000021300.1
H2XN24
14
LLPS-Cii-0764
ENSCING00000007995.3
F6W453
15
LLPS-Cii-0792
ENSCING00000024718.1
H2XY34
16
LLPS-Cii-0853
ENSCING00000009065.3
F6R213
17
LLPS-Cii-0865
ENSCING00000021869.1
H2XK34
18
LLPS-Cii-0869
ENSCING00000004198.3
F7AM07
19
LLPS-Cii-0942
ENSCING00000009621.3
F6ZV29
20
LLPS-Cii-1079
ENSCING00000009307.3
F7A5V7
21
LLPS-Cii-1087
ENSCING00000015091.2
F6TQ55
22
LLPS-Cii-1098
ENSCING00000005697.3
F6WQJ1
23
LLPS-Cii-1115
ENSCING00000020612.1
H2XX28
24
LLPS-Cii-1121
ENSCING00000018030.1
H2XVP1
25
LLPS-Cii-1157
ENSCING00000016625.2
F6RKQ2
26
LLPS-Cii-1166
ENSCING00000007979.3
F6WQW9
27
LLPS-Cii-1179
ENSCING00000004543.3
F6ZQQ7
28
LLPS-Cii-1205
ENSCING00000014897.2
F6YRL7
29
LLPS-Cii-1236
ENSCING00000011663.2
F6X986
30
LLPS-Cii-1332
ENSCING00000000257.3
F6SGH3
31
LLPS-Cii-1351
ENSCING00000016317.2
F6W3V6
32
LLPS-Cii-1365
ENSCING00000002558.4
H2XJF1
33
LLPS-Cii-1564
ENSCING00000002697.3
F6X134
34
LLPS-Cii-1752
ENSCING00000004284.3
F6UG35
35
LLPS-Cii-1772
ENSCING00000007992.3
F6W3R8
36
LLPS-Cii-1851
ENSCING00000017374.2
F7B1Z2
37
LLPS-Cii-1863
ENSCING00000008138.3
F6UIG7
38
LLPS-Cii-1990
ENSCING00000005564.3
F6URQ9
39
LLPS-Cii-2036
ENSCING00000000182.3
F6WFL4
40
LLPS-Cii-2038
ENSCING00000015811.2
F6RW32
41
LLPS-Cii-2239
ENSCING00000006661.3
F6TE09
42
LLPS-Cii-2268
ENSCING00000009616.3
F7ACY4
43
LLPS-Cii-0481
ENSCING00000003447.3
Q4H352
Ci-NF45
44
LLPS-Cii-2194
ENSCING00000006188.3
Q4H2T5
Ci-Smad2/3b
45
LLPS-Cii-1143
ENSCING00000003319.3
Q1RPZ2
Ci-ZF(MATRIN)-2
46
LLPS-Cii-1672
ENSCING00000006174.3
Q1RPU5
Ci-ZF(RING)-30
47
LLPS-Cii-0977
ENSCING00000001821.3
Q9NL43
CiGSK
48
LLPS-Cii-0019
ENSCING00000003455.3
F6UAX7
LOC100175452
49
LLPS-Cii-0350
ENSCING00000008897.3
F6QF10
LOC100175606
50
LLPS-Cii-2248
ENSCING00000007946.3
F6ZRB6
LOC100177476
51
LLPS-Cii-1612
ENSCING00000018756.1
H2XKE9
LOC100177942
52
LLPS-Cii-0512
ENSCING00000006015.3
F6ZGG6
LOC100178141
53
LLPS-Cii-0672
ENSCING00000006813.3
F6TZX4
LOC100178584
54
LLPS-Cii-1034
ENSCING00000021243.1
H2XXZ1
LOC100179085
55
LLPS-Cii-0809
ENSCING00000015390.2
F6YQB2
LOC100180053
56
LLPS-Cii-0033
ENSCING00000017376.2
F6X0R0
LOC100180259
57
LLPS-Cii-0349
ENSCING00000012468.2
F6UTK0
LOC100181118
58
LLPS-Cii-0745
ENSCING00000008843.3
F6R4H2
LOC100181821
59
LLPS-Cii-0387
ENSCING00000013363.2
F6YWI2
LOC100182504
60
LLPS-Cii-1190
ENSCING00000002325.4
F7AZI8
LOC100182642
61
LLPS-Cii-1592
ENSCING00000008979.3
F6PKL1
LOC100182844
62
LLPS-Cii-1965
ENSCING00000009973.3
F6R046
LOC100183285
63
LLPS-Cii-0283
ENSCING00000024562.1
A0A1W3JKJ9
LOC100184417
64
LLPS-Cii-0850
ENSCING00000002730.3
F6TPA2
LOC100184779
65
LLPS-Cii-0695
ENSCING00000022206.1
H2Y168
LOC100185829
66
LLPS-Cii-0133
ENSCING00000022242.1
H2XTZ8
LOC100186689
67
LLPS-Cii-1717
ENSCING00000014075.2
F6SCX5
tgfbr-ic
68
LLPS-Cii-0700
ENSCING00000023459.1
A0A1W2WQT6
zf(cchc)-24