Carlito syrichta      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 107 genes.  Reviewed (0 or Unreviewed (107

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Cas-0342
ENSTSYG00000010761.2
2
LLPS-Cas-0376
ENSTSYG00000033618.1
3
LLPS-Cas-0408
ENSTSYG00000003177.2
4
LLPS-Cas-0450
ENSTSYG00000012448.2
5
LLPS-Cas-0688
ENSTSYG00000030077.1
6
LLPS-Cas-0743
ENSTSYG00000008422.2
7
LLPS-Cas-0809
ENSTSYG00000032882.1
8
LLPS-Cas-1108
ENSTSYG00000007832.2
9
LLPS-Cas-1141
ENSTSYG00000033270.1
10
LLPS-Cas-1153
ENSTSYG00000036702.1
11
LLPS-Cas-1374
ENSTSYG00000001876.2
12
LLPS-Cas-1386
ENSTSYG00000031780.1
13
LLPS-Cas-1425
ENSTSYG00000001409.2
14
LLPS-Cas-1468
ENSTSYG00000037120.1
15
LLPS-Cas-1547
ENSTSYG00000037080.1
16
LLPS-Cas-1836
ENSTSYG00000003965.2
17
LLPS-Cas-1842
ENSTSYG00000032191.1
18
LLPS-Cas-2510
ENSTSYG00000032082.1
19
LLPS-Cas-2820
ENSTSYG00000026542.1
20
LLPS-Cas-2869
ENSTSYG00000009225.2
21
LLPS-Cas-4061
ENSTSYG00000007601.2
22
LLPS-Cas-1701
ENSTSYG00000007281.2
A0A1U7V1X7
AGO2
23
LLPS-Cas-3872
ENSTSYG00000002272.2
A0A1U7TZZ2
ALYREF
24
LLPS-Cas-1603
ENSTSYG00000002807.2
A0A1U7TZF0
ANXA10
25
LLPS-Cas-2930
ENSTSYG00000003719.2
A0A1U7T8Q5
ANXA2
26
LLPS-Cas-0620
ENSTSYG00000030992.1
A0A1U7USQ0
ARL6IP4
27
LLPS-Cas-2433
ENSTSYG00000002718.2
A0A1U7UJL2
ATR
28
LLPS-Cas-1825
ENSTSYG00000009718.2
A0A1U7UM82
CCNL1
29
LLPS-Cas-2188
ENSTSYG00000013155.2
A0A1U7UDT0
CDC5L
30
LLPS-Cas-2292
ENSTSYG00000007111.2
A0A1U7TZ69
CDK1
31
LLPS-Cas-0219
ENSTSYG00000008427.2
A0A1U7SNQ3
CDK7
32
LLPS-Cas-1539
ENSTSYG00000029147.1
A0A1U7T204
CDK9
33
LLPS-Cas-4093
ENSTSYG00000001912.2
A0A1U7U0R0
CDKL5
34
LLPS-Cas-2213
ENSTSYG00000009569.2
A0A1U7TXQ8
CLK2
35
LLPS-Cas-0569
ENSTSYG00000006239.2
A0A1U7U6P1
CSNK1A1
36
LLPS-Cas-1985
ENSTSYG00000036074.1
A0A1U7SWJ7
CUNH9orf78
37
LLPS-Cas-0082
ENSTSYG00000010226.2
A0A1U7U701
DDX39B
38
LLPS-Cas-0548
ENSTSYG00000027809.1
A0A1U7TXU2
DGCR8
39
LLPS-Cas-1644
ENSTSYG00000030085.1
A0A1U7TX71
DNAJB1
40
LLPS-Cas-0043
ENSTSYG00000031602.1
A0A1U7UF69
DNAJC17
41
LLPS-Cas-3940
ENSTSYG00000009356.2
A0A1U7UEJ0
EGF
42
LLPS-Cas-2751
ENSTSYG00000033866.1
A0A1U7SSS0
ERH
43
LLPS-Cas-2600
ENSTSYG00000037500.1
A0A1U7TMG1
FAM83H
44
LLPS-Cas-1356
ENSTSYG00000003278.2
A0A1U7UCE6
FANCD2
45
LLPS-Cas-1180
ENSTSYG00000012901.2
A0A1U7UFA2
FANCI
46
LLPS-Cas-3894
ENSTSYG00000012252.2
A0A1U7T5J6
FBXL18
47
LLPS-Cas-2599
ENSTSYG00000033044.1
A0A1U7SN77
FRMD8
48
LLPS-Cas-2351
ENSTSYG00000011757.2
A0A1U7TUZ2
FUS
49
LLPS-Cas-3596
ENSTSYG00000013767.2
A0A1U7TVN0
FYTTD1
50
LLPS-Cas-2501
ENSTSYG00000001081.2
A0A1U7URU4
HIF1A
51
LLPS-Cas-3138
ENSTSYG00000009179.2
A0A1U7UGX8
HIF3A
52
LLPS-Cas-1431
ENSTSYG00000008748.2
A0A1U7SUA7
HIPK2
53
LLPS-Cas-0900
ENSTSYG00000012949.2
A0A1U7TFG5
HNRNPA1
54
LLPS-Cas-1591
ENSTSYG00000008124.2
A0A1U7U6Y2
HNRNPA2B1
55
LLPS-Cas-0779
ENSTSYG00000001196.2
A0A1U7SY96
HNRNPK
56
LLPS-Cas-0772
ENSTSYG00000012894.2
A0A1U7T7X4
HSPA6
57
LLPS-Cas-3077
ENSTSYG00000005195.2
A0A1U7SZC8
HSPH1
58
LLPS-Cas-1132
ENSTSYG00000012061.2
A0A1U7TEC9
ILF2
59
LLPS-Cas-2165
ENSTSYG00000000317.2
A0A1U7V3J5
ILF3
60
LLPS-Cas-0587
ENSTSYG00000010278.2
A0A1U7TWC0
IVNS1ABP
61
LLPS-Cas-2900
ENSTSYG00000032350.1
A0A1U7SES4
LOC103249566
62
LLPS-Cas-1787
ENSTSYG00000006848.2
A0A1U7SQZ1
LOC103251154
63
LLPS-Cas-0455
ENSTSYG00000007423.2
A0A1U7STK9
LOC103252070
64
LLPS-Cas-0382
ENSTSYG00000008857.2
A0A1U7T9Z9
LOC103254307
65
LLPS-Cas-1807
ENSTSYG00000011964.2
A0A1U7UBE1
LOC103267413
66
LLPS-Cas-3675
ENSTSYG00000001985.2
A0A1U7TTH2
NAGK
67
LLPS-Cas-3160
ENSTSYG00000013374.2
A0A1U7V0T0
NKAP
68
LLPS-Cas-1947
ENSTSYG00000025990.1
A0A1U7TA61
NR5A1
69
LLPS-Cas-2938
ENSTSYG00000030918.1
A0A1U7TBV2
NSRP1
70
LLPS-Cas-1471
ENSTSYG00000033748.1
A0A1U7URT2
NUAK2
71
LLPS-Cas-0918
ENSTSYG00000005737.2
A0A1U7U231
OGG1
72
LLPS-Cas-3697
ENSTSYG00000007162.2
A0A1U7TRG7
P2RY12
73
LLPS-Cas-2145
ENSTSYG00000027848.1
A0A1U7U5L4
PCBP1
74
LLPS-Cas-1120
ENSTSYG00000007122.2
A0A1U7TUW4
PLRG1
75
LLPS-Cas-2509
ENSTSYG00000001160.2
A0A1U7TV53
PNN
76
LLPS-Cas-0910
ENSTSYG00000008193.2
A0A1U7UHH9
PPIG
77
LLPS-Cas-0927
ENSTSYG00000006860.2
A0A1U7SQ03
PRPF19
78
LLPS-Cas-0368
ENSTSYG00000014120.2
A0A1U7V040
PRPF8
79
LLPS-Cas-1034
ENSTSYG00000003533.2
A0A1U7TMB4
PSMA3
80
LLPS-Cas-3635
ENSTSYG00000001165.2
A0A1U7UPQ4
RBM17
81
LLPS-Cas-3063
ENSTSYG00000014755.2
A0A1U7U052
RBM23
82
LLPS-Cas-0002
ENSTSYG00000010611.2
A0A1U7ULS6
RBMX2
83
LLPS-Cas-1568
ENSTSYG00000001629.2
A0A1U7SZF7
RNPS1
84
LLPS-Cas-0404
ENSTSYG00000004739.2
A0A1U7TMV9
SF3A1
85
LLPS-Cas-1345
ENSTSYG00000008417.2
A0A1U7U3H3
SF3A3
86
LLPS-Cas-1301
ENSTSYG00000009214.2
A0A1U7TTU4
SF3B1
87
LLPS-Cas-1598
ENSTSYG00000025697.1
A0A1U7TYB8
SMAD3
88
LLPS-Cas-2645
ENSTSYG00000010467.2
A0A1U7TU73
SNRNP200
89
LLPS-Cas-3987
ENSTSYG00000034104.1
A0A1U7SU29
SNRNP35
90
LLPS-Cas-1675
ENSTSYG00000007632.2
A0A1U7T5U0
SNRPA
91
LLPS-Cas-2999
ENSTSYG00000008371.2
A0A1U7V083
SON
92
LLPS-Cas-1729
ENSTSYG00000007619.2
A0A1U7TQ75
SPOP
93
LLPS-Cas-0028
ENSTSYG00000032523.1
A0A1U7U6B5
SRRM2
94
LLPS-Cas-1742
ENSTSYG00000013899.2
A0A1U7TIL4
SRSF1
95
LLPS-Cas-0452
ENSTSYG00000009439.2
A0A1U7U4Y5
SRSF10
96
LLPS-Cas-0602
ENSTSYG00000025880.1
A0A1U7T2W0
SRSF3
97
LLPS-Cas-1652
ENSTSYG00000007903.2
A0A1U7TFX7
SRSF4
98
LLPS-Cas-1533
ENSTSYG00000012273.2
A0A1U7U8A8
SRSF7
99
LLPS-Cas-0556
ENSTSYG00000000652.2
A0A1U7TFX3
TRA2B
100
LLPS-Cas-1354
ENSTSYG00000012657.2
A0A1U7U9S3
TTC14
101
LLPS-Cas-1853
ENSTSYG00000007432.2
A0A1U7SP80
U2AF2
102
LLPS-Cas-0652
ENSTSYG00000008889.2
A0A1U7UXT3
U2SURP
103
LLPS-Cas-2280
ENSTSYG00000004330.2
A0A1U7TKR2
XPO1
104
LLPS-Cas-3125
ENSTSYG00000011668.2
A0A1U7U0J0
YTHDC1
105
LLPS-Cas-3441
ENSTSYG00000003039.2
A0A1U7TQI5
ZC3H11A
106
LLPS-Cas-1172
ENSTSYG00000010137.2
A0A1U7TBW2
ZNF106
107
LLPS-Cas-2603
ENSTSYG00000014468.2
A0A1U7UNZ5
ZNF131