Brachypodium distachyon      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 57 genes.  Reviewed (0 or Unreviewed (57

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Brd-0615
BRADI_4g12260v3
I1IK06
100821343
2
LLPS-Brd-2279
BRADI_3g48520v3
I1IBH7
100821836
3
LLPS-Brd-1938
BRADI_1g61360v3
I1H536
100821850
4
LLPS-Brd-1498
BRADI_1g66302v3
I1H6V1
100822269
5
LLPS-Brd-1118
BRADI_5g21090v3
I1J1K4
100822512
6
LLPS-Brd-2013
BRADI_1g49630v3
I1H154
100822666
7
LLPS-Brd-0797
BRADI_2g42320v3
I1HP06
100822739
8
LLPS-Brd-1269
BRADI_3g30430v3
I1I596
100822879
9
LLPS-Brd-2368
BRADI_4g35060v3
I1IRS7
100823301
10
LLPS-Brd-1924
BRADI_2g09170v3
I1HE13
100823370
11
LLPS-Brd-1109
BRADI_1g55020v3
I1H2Y5
100823909
12
LLPS-Brd-1678
BRADI_1g67320v3
I1H772
100823915
13
LLPS-Brd-1024
BRADI_5g20787v3
I1J1G9
100824458
14
LLPS-Brd-1994
BRADI_3g14310v3
I1I0P6
100825627
15
LLPS-Brd-1708
BRADI_2g40807v3
A0A0Q3GAC3
100826234
16
LLPS-Brd-0125
BRADI_1g21390v3
I1GSC4
100826320
17
LLPS-Brd-0096
BRADI_3g00980v3
I1HW70
100827281
18
LLPS-Brd-1842
BRADI_3g57667v3
A0A0Q3MBN0
100827481
19
LLPS-Brd-0153
BRADI_1g66430v3
I1H6W6
100828658
20
LLPS-Brd-2519
BRADI_1g61730v3
I1H578
100829528
21
LLPS-Brd-0943
BRADI_3g28280v3
I1I4J3
100829617
22
LLPS-Brd-2186
BRADI_4g07110v3
I1IIB3
100830760
23
LLPS-Brd-0705
BRADI_3g60667v3
I1IFS1
100832043
24
LLPS-Brd-1644
BRADI_1g03270v3
A0A0Q3GMN5
100832621
25
LLPS-Brd-0141
BRADI_5g07850v3
I1IX23
100833136
26
LLPS-Brd-1177
BRADI_2g26510v3
I1HJT9
100833383
27
LLPS-Brd-0638
BRADI_1g00887v3
A0A0Q3GNG3
100833436
28
LLPS-Brd-1949
BRADI_2g08890v3
I1HDY0
100834299
29
LLPS-Brd-0789
BRADI_1g18070v3
I1GR86
100834993
30
LLPS-Brd-0486
BRADI_1g62920v3
A0A0Q3SA02
100835690
31
LLPS-Brd-2113
BRADI_1g18180v3
I1GR99
100836224
32
LLPS-Brd-1493
BRADI_1g55530v3
I1H342
100836372
33
LLPS-Brd-1461
BRADI_1g66870v3
I1H719
100836380
34
LLPS-Brd-1939
BRADI_3g45690v3
I1IAG9
100836671
35
LLPS-Brd-2130
BRADI_2g09770v3
I1HE83
100836755
36
LLPS-Brd-0302
BRADI_3g58172v3
I1IEX6
100837688
37
LLPS-Brd-0608
BRADI_2g21510v3
I1HI75
100838471
38
LLPS-Brd-0167
BRADI_1g01530v3
I1GKU0
100839483
39
LLPS-Brd-0738
BRADI_3g03690v3
I1HX53
100839729
40
LLPS-Brd-0669
BRADI_2g35120v3
I1HLM8
100841222
41
LLPS-Brd-2091
BRADI_1g45640v3
I1GZQ5
100843138
42
LLPS-Brd-0672
BRADI_3g05977v3
I1HXY1
100843167
43
LLPS-Brd-0661
BRADI_3g18357v3
I1I231
100843891
44
LLPS-Brd-0857
BRADI_3g58600v3
I1IF08
100844180
45
LLPS-Brd-0357
BRADI_4g32070v3
I1IQQ3
100845029
46
LLPS-Brd-1979
BRADI_2g09850v3
I1HE92
100845178
47
LLPS-Brd-1172
BRADI_1g65000v3
I1H6D9
100845326
48
LLPS-Brd-0846
BRADI_1g48340v3
A0A0Q3H9Z5
100846057
49
LLPS-Brd-0210
BRADI_3g48460v3
I1IBG7
100846226
50
LLPS-Brd-0866
BRADI_1g48264v3
A0A0Q3H9X2
100846384
51
LLPS-Brd-0796
BRADI_2g42210v3
I1HNZ5
100846703
52
LLPS-Brd-0910
BRADI_1g30007v3
A0A0Q3H264
BRADI_1g30007v3
53
LLPS-Brd-1363
BRADI_1g57377v3
A0A2K2DS13
BRADI_1g57377v3
54
LLPS-Brd-0716
BRADI_1g74670v3
I1H9K2
BRADI_1g74670v3
55
LLPS-Brd-1201
BRADI_2g34167v3
I1HLB5
BRADI_2g34167v3
56
LLPS-Brd-2132
BRADI_3g53760v3
I1IDC3
BRADI_3g53760v3
57
LLPS-Brd-2261
BRADI_5g10810v3
A0A0Q3I9F9
BRADI_5g10810v3