Aspergillus clavatus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 33 genes.  Reviewed (0 or Unreviewed (33

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Asc-1018
ACLA_002730
A1C594
ACLA_002730
2
LLPS-Asc-1377
ACLA_005400
A1CD59
ACLA_005400
3
LLPS-Asc-0163
ACLA_006960
A1CDL0
ACLA_006960
4
LLPS-Asc-0205
ACLA_007010
A1CDL5
ACLA_007010
5
LLPS-Asc-0996
ACLA_007020
A1CDL6
ACLA_007020
6
LLPS-Asc-0905
ACLA_008810
A1C9P3
ACLA_008810
7
LLPS-Asc-0498
ACLA_012010
A1CAK5
ACLA_012010
8
LLPS-Asc-0368
ACLA_012210
A1CAM5
ACLA_012210
9
LLPS-Asc-0684
ACLA_014040
A1CB49
ACLA_014040
10
LLPS-Asc-0997
ACLA_015500
A1CBJ0
ACLA_015500
11
LLPS-Asc-1250
ACLA_016460
A1CBT2
ACLA_016460
12
LLPS-Asc-0572
ACLA_016490
A1CBT5
ACLA_016490
13
LLPS-Asc-0398
ACLA_024810
A1CQ44
ACLA_024810
14
LLPS-Asc-1002
ACLA_026010
A1CQG3
ACLA_026010
15
LLPS-Asc-0237
ACLA_026800
A1CQN7
ACLA_026800
16
LLPS-Asc-0847
ACLA_028120
A1CR16
ACLA_028120
17
LLPS-Asc-0232
ACLA_029550
A1CRF4
ACLA_029550
18
LLPS-Asc-1097
ACLA_034390
A1CJB2
ACLA_034390
19
LLPS-Asc-0150
ACLA_036080
A1CJT1
ACLA_036080
20
LLPS-Asc-1027
ACLA_037960
A1CKB2
ACLA_037960
21
LLPS-Asc-0442
ACLA_046120
A1CGZ2
ACLA_046120
22
LLPS-Asc-0884
ACLA_050920
A1CIB5
ACLA_050920
23
LLPS-Asc-1462
ACLA_053560
A1C8Y6
ACLA_053560
24
LLPS-Asc-0952
ACLA_058130
A1C416
ACLA_058130
25
LLPS-Asc-0576
ACLA_065640
A1CG50
ACLA_065640
26
LLPS-Asc-0973
ACLA_073860
A1C7H9
ACLA_073860
27
LLPS-Asc-1590
ACLA_080580
A1CST7
ACLA_080580
28
LLPS-Asc-1532
ACLA_080610
A1CSU0
ACLA_080610
29
LLPS-Asc-1621
ACLA_088130
A1CE25
ACLA_088130
30
LLPS-Asc-1671
ACLA_088270
A1CE39
ACLA_088270
31
LLPS-Asc-0505
ACLA_089160
A1CEC5
ACLA_089160
32
LLPS-Asc-0001
ACLA_091810
A1CF34
ACLA_091810
33
LLPS-Asc-1148
ACLA_095420
A1CM22
ACLA_095420