Trichoderma virens      Droplet


※ Droplet introduction

    Interactions between diverse synthetic, multivalent macromolecules (including multi-domain proteins and RNA) produce sharp liquid-liquid-demixing phase separations, generating micrometre-sized liquid droplets in aqueous solution (1-2). In vitro phase separation assays with purified proteins have become the standard way to investigate proteins that form membrane-less compartments. By now, various proteins have been purified and tested for their ability to phase separate and form liquid condensates in vitro (3).

References
1. Li P., Banjade S., Cheng H.C., et al. (2012) Phase transitions in the assembly of multivalent signalling proteins. Nature, 483, 336-40. PMID: 22398450
2. Kato M., Han T.W., Xie S., et al. (2012) Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell, 149, 753-67. PMID: 22579281
3. Alberti S., Saha S., Woodruff J.B., et al. (2018) A User’s Guide for Phase Separation Assays with Purified Proteins. J. Mol. Biol., 430, 4806-4820. PMID: 29944854


There are 37 genes.  Reviewed (0 or Unreviewed (37

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Trv-0307
TRIVIDRAFT_88216
G9N8S9
ADK1
2
LLPS-Trv-0068
TRIVIDRAFT_188272
G9MEC3
CDK9
3
LLPS-Trv-1045
TRIVIDRAFT_68894
G9MYY7
LSM4
4
LLPS-Trv-1208
TRIVIDRAFT_54516
G9MMT7
TPK4
5
LLPS-Trv-0105
TRIVIDRAFT_116557
G9MWD7
TRIVIDRAFT_116557
6
LLPS-Trv-1535
TRIVIDRAFT_11674
G9MP71
TRIVIDRAFT_11674
7
LLPS-Trv-1001
TRIVIDRAFT_123489
G9NA04
TRIVIDRAFT_123489
8
LLPS-Trv-0918
TRIVIDRAFT_143568
G9MJM7
TRIVIDRAFT_143568
9
LLPS-Trv-0316
TRIVIDRAFT_147252
G9MNI6
TRIVIDRAFT_147252
10
LLPS-Trv-1365
TRIVIDRAFT_169516
G9MPN6
TRIVIDRAFT_169516
11
LLPS-Trv-0643
TRIVIDRAFT_170886
G9MWF6
TRIVIDRAFT_170886
12
LLPS-Trv-0874
TRIVIDRAFT_182031
G9N2I2
TRIVIDRAFT_182031
13
LLPS-Trv-0821
TRIVIDRAFT_183151
G9N6H5
TRIVIDRAFT_183151
14
LLPS-Trv-1506
TRIVIDRAFT_183763
G9N943
TRIVIDRAFT_183763
15
LLPS-Trv-0052
TRIVIDRAFT_212193
G9MM33
TRIVIDRAFT_212193
16
LLPS-Trv-0016
TRIVIDRAFT_216506
G9N152
TRIVIDRAFT_216506
17
LLPS-Trv-0394
TRIVIDRAFT_217212
G9NCG5
TRIVIDRAFT_217212
18
LLPS-Trv-1662
TRIVIDRAFT_22864
G9MR77
TRIVIDRAFT_22864
19
LLPS-Trv-1004
TRIVIDRAFT_38275
G9NDJ8
TRIVIDRAFT_38275
20
LLPS-Trv-1287
TRIVIDRAFT_40990
G9N999
TRIVIDRAFT_40990
21
LLPS-Trv-0568
TRIVIDRAFT_51360
G9NDU8
TRIVIDRAFT_51360
22
LLPS-Trv-0526
TRIVIDRAFT_57658
G9N3C8
TRIVIDRAFT_57658
23
LLPS-Trv-1157
TRIVIDRAFT_59260
G9N1S1
TRIVIDRAFT_59260
24
LLPS-Trv-1639
TRIVIDRAFT_71606
G9MLE8
TRIVIDRAFT_71606
25
LLPS-Trv-1224
TRIVIDRAFT_73902
G9MP84
TRIVIDRAFT_73902
26
LLPS-Trv-0522
TRIVIDRAFT_74188
G9MQL7
TRIVIDRAFT_74188
27
LLPS-Trv-1665
TRIVIDRAFT_74222
G9MQI0
TRIVIDRAFT_74222
28
LLPS-Trv-1161
TRIVIDRAFT_74503
G9NCU9
TRIVIDRAFT_74503
29
LLPS-Trv-0421
TRIVIDRAFT_76275
G9N3I3
TRIVIDRAFT_76275
30
LLPS-Trv-0898
TRIVIDRAFT_76473
G9N5E0
TRIVIDRAFT_76473
31
LLPS-Trv-0486
TRIVIDRAFT_77851
G9MGC4
TRIVIDRAFT_77851
32
LLPS-Trv-1262
TRIVIDRAFT_77860
G9MGD1
TRIVIDRAFT_77860
33
LLPS-Trv-0376
TRIVIDRAFT_80342
G9N9F2
TRIVIDRAFT_80342
34
LLPS-Trv-0046
TRIVIDRAFT_82475
G9MQJ5
TRIVIDRAFT_82475
35
LLPS-Trv-0498
TRIVIDRAFT_82631
G9NCA8
TRIVIDRAFT_82631
36
LLPS-Trv-0243
TRIVIDRAFT_85034
G9MIB4
TRIVIDRAFT_85034
37
LLPS-Trv-0128
TRIVIDRAFT_90943
G9NDS4
TRIVIDRAFT_90943