LLPS-Hos-0808
EWSR1
▼ Classification
Minimum set of experiments:
In vitro | ||
Experiment | Description | PMIDs |
---|---|---|
Assembly | "...At a concentration similar to the nuclear concentration (7.6 μM), FUS phase separated into droplets (Fig. 1, E and F). This behavior contrasted with that in living cells, where only 1% of the nuclear FUS protein was contained in condensates (Fig. 1F), which are paraspeckles (19). The remaining 99% of nuclear FUS protein was diffusely localized. Similar observations were made for TDP43, EWSR1, TAF15, and hnRNPA1." | 29961577 |
In cells | ||
Experiment | Description | PMIDs |
Assembly | "...At a concentration similar to the nuclear concentration (7.6 μM), FUS phase separated into droplets (Fig. 1, E and F). This behavior contrasted with that in living cells, where only 1% of the nuclear FUS protein was contained in condensates (Fig. 1F), which are paraspeckles (19). The remaining 99% of nuclear FUS protein was diffusely localized. Similar observations were made for TDP43, EWSR1, TAF15, and hnRNPA1." | 29961577 |
Partners:
Complex | Description | PMIDs |
---|---|---|
FUS + EWSR1 | "...When ADMA FUS or HYPO FUS were mixed with TAF15 or EWS, their phase behavior was essentially indistinguishable from ADMA FUS or HYPO FUS alone. However, TNPO1 strongly suppressed phase separation of both ADMA FUS and HYPO FUS." | 29677515 |
EWSR1 + RNA | "...Small amounts of RNA promoted liquid droplet formation. RNA-containing droplets contained a higher FUS concentration than RNA-free droplets, and they appeared slightly more viscous. However, upon further increase in the RNA/protein concentration ratio, the droplets became smaller and finally dissolved. The addition of RNase A resulted in droplet reappearance, indicating that droplet solubilization depends on intact RNA. Similar results were obtained for EWSR1, TAF15, hnRNPA1, and TDP43. Thus, we conclude that high RNA/protein ratios prevent phase separation and that low ratios promote phase separation." | 29650702 |
Condensates:
Condensate | Description | Tissue/Cell | PMIDs |
---|---|---|---|
Droplet | "...To develop a predictor for the phase separation propensity of a given protein sequence, we started by defining a set of 11 proteins which have been shown, in the literature, to phase separate in vitro as single purified components due to interactions involving intrinsically disordered regions of the protein." | In vitro | 29424691 |
Droplet | "...We were able to drive phase separation of most FUS family proteins (FUS, EWSR1, TAF15, hnRNPDL, hnRNPH3, hnRNPA3, hnRNPH1, hnRNPH2, CSTF2, hnRNPA2B1, CSTF2T, hnRNPA1b, hnRNPA1a, PSPC1, hnRNPD, hnRNPAB, hnRNPA0, DAZAP1, hnRNPA1L2, TIA1, TIAL1, TDP-43) either by increasing protein concentration or by adding dextran, which is a molecular crowding agent. However, only FUS, EWSR1, and TAF15, which constitute the FET family, showed robust phase separation in the absence of crowding agents at a protein concentration of 5 μM." | In vitro | 29961577 |
Droplet | "...No trapping whatsoever was observed when the GFP:CTD test protein was exposed to either hnRNPA2 or CIRBP hydrogel droplets, and weak trapping was observed for FUS and EWS hydrogels." | In vitro | 24267890 |
Nucleolus | "...The data set from all our nucleolar mass spectrometry analyses defines an updated group of 692 proteins that reproducibly copurify with human nucleoli." | HeLa cells | 15635413 |
Centrosome/Spindle pole body | "...MiCroKiTS 4.0: a database of midbody, centrosome, kinetochore, telomere and spindle." | N/A | 19133275 |
Stress granule | "...We found that the insoluble fraction of TAF15 was markedly reduced in PAD4-expressing cells and there was a corresponding increase in the TAF15 soluble fraction. In addition, the solubility of the ALS-linked mutant form of TAF15 (G391E) was modulated by citrullination. Similarly, TAF15, FUS, EWSR1, and hnRNPA1 proteins in insoluble fraction were remarkably decreased in PAD4-expressing HEK293T and Neuro-2A neural cells." | HEK293T cells | 29425503 |
Stress granule | "...By adding known stress granule components not identified by mass spectrometry to this list, we created the first stress granule proteome for a mammalian cell." | U2OS cells | 26777405 |
Stress granule | "...283 proteins identified as APEX hits in HEK293T cells or previously shown to associate with SGs." | N/A | 29373831 |
Nuclear speckle, Neuronal granule, Chromatoid body | Predicted from orthologs | N/A | (View) |
▼ FUNCTION
Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
▼ CROSS REFERENCE
▼ SEQUENCE
Protein Sequence (FASTA) |
---|
1 MASTDYSTYS QAAAQQGYSA YTAQPTQGYA QTTQAYGQQS YGTYGQPTDV SYTQAQTTAT 60 61 YGQTAYATSY GQPPTVEGTS TGYTTPTAPQ AYSQPVQGYG TGAYDTTTAT VTTTQASYAA 120 121 QSAYGTQPAY PAYGQQPAAT APTRPQDGNK PTETSQPQSS TGGYNQPSLG YGQSNYSYPQ 180 181 VPGSYPMQPV TAPPSYPPTS YSSTQPTSYD QSSYSQQNTY GQPSSYGQQS SYGQQSSYGQ 240 241 QPPTSYPPQT GSYSQAPSQY SQQSSSYGQQ SSFRQDHPSS MGVYGQESGG FSGPGENRSM 300 301 SGPDNRGRGR GGFDRGGMSR GGRGGGRGGM GAGERGGFNK PGGPMDEGPD LDLGPPVDPD 360 361 EDSDNSAIYV QGLNDSVTLD DLADFFKQCG VVKMNKRTGQ PMIHIYLDKE TGKPKGDATV 420 421 SYEDPPTAKA AVEWFDGKDF QGSKLKVSLA RKKPPMNSMR GGLPPREGRG MPPPLRGGPG 480 481 GPGGPGGPMG RMGGRGGDRG GFPPRGPRGS RGNPSGGGNV QHRAGDWQCP NPGCGNQNFA 540 541 WRTECNQCKA PKPEGFLPPP FPPPGGDRGR GGPGGMRGGR GGLMDRGGPG GMFRGGRGGD 600 601 RGGFRGGRGM DRGGFGGGRR GGPGGPPGPL MEQMGGRRGG RGGPGKMDKG EHRQERRDRP 660 661 Y 661 |
Nucleotide CDS Sequence (FASTA) |
1 ATGGCGTCCA CGGATTACAG TACCTATAGC CAAGCTGCAG CGCAGCAGGG CTACAGTGCT 60 61 TACACCGCCC AGCCCACTCA AGGATATGCA CAGACCACCC AGGCATATGG GCAACAAAGC 120 121 TATGGAACCT ATGGACAGCC CACTGATGTC AGCTATACCC AGGCTCAGAC CACTGCAACC 180 181 TATGGGCAGA CCGCCTATGC AACTTCTTAT GGACAGCCTC CCACTGGTTA TACTACTCCA 240 241 ACTGCCCCCC AGGCATACAG CCAGCCTGTC CAGGGGTATG GCACTGGTGC TTATGATACC 300 301 ACCACTGCTA CAGTCACCAC CACCCAGGCC TCCTATGCAG CTCAGTCTGC ATATGGCACT 360 361 CAGCCTGCTT ATCCAGCCTA TGGGCAGCAG CCAGCAGCCA CTGCACCTAC AAGACCGCAG 420 421 GATGGAAACA AGCCCACTGA GACTAGTCAA CCTCAATCTA GCACAGGGGG TTACAACCAG 480 481 CCCAGCCTAG GATATGGACA GAGTAACTAC AGTTATCCCC AGGTACCTGG GAGCTACCCC 540 541 ATGCAGCCAG TCACTGCACC TCCATCCTAC CCTCCTACCA GCTATTCCTC TACACAGCCG 600 601 ACTAGTTATG ATCAGAGCAG TTACTCTCAG CAGAACACCT ATGGGCAACC GAGCAGCTAT 660 661 GGACAGCAGA GTAGCTATGG TCAACAAAGC AGCTATGGGC AGCAGCCTCC CACTAGTTAC 720 721 CCACCCCAAA CTGGATCCTA CAGCCAAGCT CCAAGTCAAT ATAGCCAACA GAGCAGCAGC 780 781 TACGGGCAGC AGAGTTCATT CCGACAGGAC CACCCCAGTA GCATGGGTGT TTATGGGCAG 840 841 GAGTCTGGAG GATTTTCCGG ACCAGGAGAG AACCGGAGCA TGAGTGGCCC TGATAACCGG 900 901 GGCAGGGGAA GAGGGGGATT TGATCGTGGA GGCATGAGCA GAGATCCAGA TGAAGACTCT 960 961 GACAACAGTG CAATTTATGT ACAAGGATTA AATGACAGTG TGACTCTAGA TGATCTGGCA 1020 1021 GACTTCTTTA AGCAGTGTGG GGTTGTTAAG ATGAACAAGA GAACTGGGCA ACCCATGATC 1080 1081 CACATCTACC TGGACAAGGA AACAGGAAAG CCCAAAGGCG ATGCCACAGT GTCCTATGAA 1140 1141 GACCCACCCA CTGCCAAGGC TGCCGTGGAA TGGTTTGATG GGAAAGATTT TCAAGGGAGC 1200 1201 AAACTTAAAG TCTCCCTTGC TCGGAAGAAG CCTCCAATGA ACAGTATGCG GGGTGGTCTG 1260 1261 CCACCCCGTG AGGGCAGAGG CATGCCACCA CCACTCCGTG GAGGTCCAGG AGGCCCAGGA 1320 1321 GGTCCTGGGG GACCCATGGG TCGCATGGGA GGCCGTGGAG GAGATAGAGG AGGCTTCCCT 1380 1381 CCAAGAGGAC CCCGGGGTTC CCGAGGGAAC CCCTCTGGAG GAGGAAACGT CCAGCACCGA 1440 1441 GCTGGAGACT GGCAGTGTCC CAATCCGGGT TGTGGAAACC AGAACTTCGC CTGGAGAACA 1500 1501 GAGTGCAACC AGTGTAAGGC CCCAAAGCCT GAAGGCTTCC TCCCGCCACC CTTTCCGCCC 1560 1561 CCGGGTGGTG ATCGTGGCAG AGGTGGCCCT GGTGGCATGC GGGGAGGAAG AGGTGGCCTC 1620 1621 ATGGATCGTG GTGGTCCCGG TGGAATGTTC AGAGGTGGCC GTGGTGGAGA CAGAGGTGGC 1680 1681 TTCCGTGGTG GCCGGGGCAT GGACCGAGGT GGCTTTGGTG GAGGAAGACG AGGTGGCCCT 1740 1741 GGGGGGCCCC CTGGACCTTT GATGGAACAG ATGGGAGGAA GAAGAGGAGG ACGTGGAGGA 1800 1801 CCTGGAAAAA TGGATAAAGG CGAGCACCGT CAGGAGCGCA GAGATCGGCC CTACTAG 1857 |
▼ KEYWORD
ID | Family |
3D-structure | |
Acetylation | |
Alternative splicing | |
Calmodulin-binding | |
Cell membrane | |
Chromosomal rearrangement | |
Complete proteome | |
Cytoplasm | |
Direct protein sequencing | |
Membrane | |
Metal-binding | |
Methylation | |
Nucleus | |
Phosphoprotein | |
Proto-oncogene | |
Reference proteome | |
Repeat | |
Repressor | |
RNA-binding | |
Transcription | |
Transcription regulation | |
Zinc | |
Zinc-finger
|
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | Cytoplasm | |
Cellular Component | Nucleolus | |
Cellular Component | Nucleus | |
Cellular Component | Plasma membrane | |
Molecular Function | Calmodulin binding | |
Molecular Function | Identical protein binding | |
Molecular Function | Metal ion binding | |
Molecular Function | RNA binding | |
Biological Process | Regulation of transcription, DNA-templated |
▼ ANNOTATION
Variation | ||||
dbSNP |
Drug | ||||
CTD |
Physicochemical | ||||
Compute pI/Mw | AAindex |
Function | ||||
PIRSF | ENPD | CORUM | CellMarker | RaftProt |
Localization | ||||
COMPARTMENTS | NLSdb |
Methylation | ||||
TCGA | ICGC | MethyCancer |
▼ ORTHOLOGY
DrLLPS ID | Organism | Identity | E-value | Score |
---|---|---|---|---|
LLPS-Dio-1039 | Dipodomys ordii | 100.0 | 3e-16 | 84.3 |
LLPS-Bot-0548 | Bos taurus | 100.0 | 6e-16 | 85.9 |
LLPS-Ran-0538 | Rattus norvegicus | 100.0 | 3e-16 | 86.7 |
LLPS-Paa-2937 | Papio anubis | 100.0 | 3e-16 | 86.7 |
LLPS-Mal-3101 | Mandrillus leucophaeus | 100.0 | 3e-41 | 163 |
LLPS-Myl-1316 | Myotis lucifugus | 100.0 | 1e-11 | 71.6 |
LLPS-Ova-2888 | Ovis aries | 100.0 | 1e-11 | 71.6 |
LLPS-Aim-3827 | Ailuropoda melanoleuca | 100.0 | 4e-16 | 86.3 |
LLPS-Mup-1311 | Mustela putorius furo | 100.0 | 3e-16 | 86.7 |
LLPS-Mum-2279 | Mus musculus | 100.0 | 3e-16 | 86.7 |
LLPS-Maf-1508 | Macaca fascicularis | 100.0 | 3e-41 | 163 |
LLPS-Chs-2848 | Chlorocebus sabaeus | 100.0 | 4e-16 | 84.7 |
LLPS-Ora-2576 | Ornithorhynchus anatinus | 100.0 | 2e-16 | 87.0 |
LLPS-Sus-3401 | Sus scrofa | 100.0 | 5e-16 | 86.3 |
LLPS-Aon-3978 | Aotus nancymaae | 100.0 | 3e-16 | 86.7 |
LLPS-Sah-2286 | Sarcophilus harrisii | 100.0 | 9e-12 | 72.4 |
LLPS-Cea-0156 | Cercocebus atys | 100.0 | 3e-41 | 163 |
LLPS-Gog-1454 | Gorilla gorilla | 100.0 | 6e-73 | 254 |
LLPS-Fud-1072 | Fukomys damarensis | 100.0 | 3e-16 | 86.7 |
LLPS-Caj-3101 | Callithrix jacchus | 100.0 | 3e-41 | 163 |
LLPS-Caf-1578 | Canis familiaris | 100.0 | 3e-16 | 86.7 |
LLPS-Poa-2607 | Pongo abelii | 100.0 | 3e-16 | 86.7 |
LLPS-Eqc-1131 | Equus caballus | 100.0 | 3e-16 | 86.7 |
LLPS-Mam-2464 | Macaca mulatta | 100.0 | 3e-16 | 86.7 |
LLPS-Cas-0933 | Carlito syrichta | 100.0 | 3e-16 | 86.7 |
LLPS-Xet-2303 | Xenopus tropicalis | 100.0 | 4e-15 | 83.2 |
LLPS-Nol-3433 | Nomascus leucogenys | 100.0 | 3e-16 | 86.3 |
LLPS-Anc-2346 | Anolis carolinensis | 100.0 | 1e-17 | 90.9 |
LLPS-Ict-2955 | Ictidomys tridecemlineatus | 100.0 | 5e-16 | 85.9 |
LLPS-Pap-2087 | Pan paniscus | 100.0 | 3e-16 | 86.7 |
LLPS-Urm-0139 | Ursus maritimus | 100.0 | 4e-16 | 86.7 |
LLPS-Pat-1353 | Pan troglodytes | 100.0 | 6e-73 | 254 |
LLPS-Mod-2572 | Monodelphis domestica | 100.0 | 2e-16 | 87.0 |
LLPS-Fec-1353 | Felis catus | 100.0 | 3e-16 | 86.7 |
LLPS-Man-2674 | Macaca nemestrina | 100.0 | 3e-16 | 86.7 |
LLPS-Loa-0495 | Loxodonta africana | 100.0 | 3e-16 | 86.7 |
LLPS-Otg-2864 | Otolemur garnettii | 100.0 | 3e-16 | 86.7 |
LLPS-Pes-2226 | Pelodiscus sinensis | 100.0 | 2e-16 | 87.4 |
LLPS-Orc-1376 | Oryctolagus cuniculus | 100.0 | 2e-11 | 71.6 |
LLPS-Rhb-3350 | Rhinopithecus bieti | 100.0 | 3e-16 | 86.7 |
LLPS-Cap-4025 | Cavia porcellus | 98.4 | 2e-40 | 160 |
LLPS-Gaga-0945 | Gallus gallus | 97.06 | 2e-15 | 84.3 |
LLPS-Lac-1061 | Latimeria chalumnae | 97.06 | 9e-16 | 85.1 |
LLPS-Fia-2970 | Ficedula albicollis | 97.06 | 2e-15 | 84.0 |
LLPS-Tag-1079 | Taeniopygia guttata | 92.0 | 1e-07 | 59.3 |
LLPS-Mea-1617 | Mesocricetus auratus | 91.67 | 1e-15 | 85.1 |
LLPS-Asm-0085 | Astyanax mexicanus | 91.67 | 5e-16 | 85.9 |
LLPS-Leo-0508 | Lepisosteus oculatus | 91.18 | 4e-14 | 80.1 |
LLPS-Scf-1222 | Scleropages formosus | 88.89 | 8e-15 | 82.4 |
LLPS-Gaa-1242 | Gasterosteus aculeatus | 87.5 | 2e-12 | 74.7 |
LLPS-Orl-2252 | Oryzias latipes | 87.5 | 1e-12 | 75.1 |
LLPS-Scm-3083 | Scophthalmus maximus | 87.5 | 1e-12 | 75.5 |
LLPS-Meg-0473 | Meleagris gallopavo | 87.17 | 1e-63 | 229 |
LLPS-Icp-1108 | Ictalurus punctatus | 86.11 | 4e-14 | 79.7 |
LLPS-Dar-2944 | Danio rerio | 86.11 | 2e-14 | 80.5 |
LLPS-Tar-2016 | Takifugu rubripes | 84.38 | 4e-12 | 73.6 |
LLPS-Ten-0292 | Tetraodon nigroviridis | 76.47 | 6e-11 | 69.7 |
LLPS-Orn-0349 | Oreochromis niloticus | 76.47 | 1e-10 | 68.9 |
LLPS-Sot-2048 | Solanum tuberosum | 71.43 | 6e-06 | 53.5 |
LLPS-Bro-0016 | Brassica oleracea | 71.43 | 7e-06 | 53.1 |
LLPS-Anp-2499 | Anas platyrhynchos | 68.75 | 6e-08 | 60.1 |
LLPS-Glm-1372 | Glycine max | 67.44 | 2e-10 | 64.3 |
LLPS-Tut-0706 | Tursiops truncatus | 65.62 | 3e-07 | 57.8 |
LLPS-Xim-3708 | Xiphophorus maculatus | 63.89 | 1e-07 | 58.5 |
LLPS-Pof-3703 | Poecilia formosa | 63.89 | 2e-07 | 58.5 |
LLPS-Ors-1718 | Oryza sativa | 52.81 | 5e-21 | 95.9 |
LLPS-Orgl-1067 | Oryza glumaepatula | 51.69 | 4e-19 | 94.7 |
LLPS-Cus-0334 | Cucumis sativus | 51.69 | 1e-19 | 95.9 |
LLPS-Ori-2100 | Oryza indica | 51.69 | 4e-19 | 94.7 |
LLPS-Orni-1289 | Oryza nivara | 51.69 | 4e-19 | 94.7 |
LLPS-Orr-1411 | Oryza rufipogon | 51.69 | 4e-19 | 94.4 |
LLPS-Org-1835 | Oryza glaberrima | 51.69 | 6e-20 | 94.4 |
LLPS-Gor-0149 | Gossypium raimondii | 51.69 | 5e-19 | 93.6 |
LLPS-Orb-1582 | Oryza barthii | 51.19 | 3e-18 | 90.9 |
LLPS-Sei-1264 | Setaria italica | 50.56 | 7e-19 | 93.2 |
LLPS-Brn-0759 | Brassica napus | 49.44 | 1e-18 | 92.4 |
LLPS-Brr-2803 | Brassica rapa | 49.44 | 1e-18 | 92.4 |
LLPS-Pot-0882 | Populus trichocarpa | 49.44 | 6e-18 | 90.1 |
LLPS-Dac-0882 | Daucus carota | 47.87 | 2e-17 | 89.0 |
LLPS-Chr-1691 | Chlamydomonas reinhardtii | 46.67 | 2e-17 | 90.1 |
LLPS-Drm-1254 | Drosophila melanogaster | 46.15 | 1e-19 | 95.9 |
LLPS-Abg-1156 | Absidia glauca | 46.15 | 5e-20 | 95.9 |
LLPS-Tra-0674 | Triticum aestivum | 44.76 | 2e-16 | 86.3 |
LLPS-Amt-1962 | Amborella trichopoda | 44.44 | 7e-14 | 78.6 |
LLPS-Arl-0102 | Arabidopsis lyrata | 43.33 | 3e-13 | 77.0 |
LLPS-Art-0955 | Arabidopsis thaliana | 43.33 | 2e-13 | 77.4 |
LLPS-Cii-0483 | Ciona intestinalis | 43.21 | 1e-19 | 92.4 |
LLPS-Hea-0597 | Helianthus annuus | 41.86 | 1e-14 | 81.3 |
LLPS-Sob-1373 | Sorghum bicolor | 41.38 | 8e-14 | 78.6 |
LLPS-Thc-1265 | Theobroma cacao | 41.11 | 2e-14 | 80.5 |
LLPS-Zem-0482 | Zea mays | 40.23 | 3e-13 | 76.6 |
LLPS-Met-2481 | Medicago truncatula | 40.0 | 2e-12 | 73.9 |
LLPS-Phv-1267 | Phaseolus vulgaris | 40.0 | 3e-14 | 79.7 |
LLPS-Php-0563 | Physcomitrella patens | 39.73 | 2e-10 | 67.8 |
LLPS-Scp-1198 | Schizosaccharomyces pombe | 39.33 | 3e-10 | 66.6 |
LLPS-Orm-0390 | Oryza meridionalis | 39.08 | 5e-13 | 76.3 |
LLPS-Nia-1420 | Nicotiana attenuata | 39.0 | 1e-10 | 68.6 |
LLPS-Via-0173 | Vigna angularis | 38.89 | 4e-14 | 79.7 |
LLPS-Vir-0473 | Vigna radiata | 38.89 | 6e-14 | 79.0 |
LLPS-Mua-1310 | Musa acuminata | 38.89 | 1e-12 | 74.7 |
LLPS-Orbr-1470 | Oryza brachyantha | 38.89 | 2e-13 | 77.0 |
LLPS-Coc-0027 | Corchorus capsularis | 38.64 | 6e-14 | 76.3 |
LLPS-Hov-0877 | Hordeum vulgare | 37.78 | 1e-12 | 75.1 |
LLPS-Brd-1092 | Brachypodium distachyon | 37.78 | 4e-13 | 76.3 |
LLPS-Tru-1275 | Triticum urartu | 37.78 | 1e-12 | 75.1 |
LLPS-Orp-0977 | Oryza punctata | 37.78 | 4e-13 | 76.3 |
LLPS-Mae-0158 | Manihot esculenta | 37.78 | 1e-12 | 74.7 |
LLPS-Osl-0087 | Ostreococcus lucimarinus | 37.23 | 5e-10 | 63.9 |
LLPS-Lep-0463 | Leersia perrieri | 36.67 | 6e-13 | 75.5 |
LLPS-Sem-1352 | Selaginella moellendorffii | 36.67 | 8e-11 | 68.9 |