Beauveria bassiana      Scaffold


※ Scaffold introduction

    Scaffolds were defined as the drivers of LLPS essential for the structural integrity of MLOs, and the major components which, alone or with co-scaffolds, undergo LLPS (1-4). A minimum set of six experimental tests, including the assembly of spherical droplets, the observation of fusion events, and the identification of mutations that abolish or inhibit LLPS in vitro and in cells have been proposed for rigorous analysis of LLPS processes (1). For each known scaffold protein, descriptions on performed assays of the minimum set of experiments were presented on its gene page. For example, the human fused in sarcoma (FUS), a well-characterized RNA-binding protein undergoing LLPS involved in formation of multiple biomolecular condensates (5,6-8), forms liquid-like droplets both in cells and at near physiological conditions in vitro. All the six experimental tests were performed to analyze the LLPS properties of FUS (9).

References
1. Alberti, S., Gladfelter, A. and Mittag, T. (2019) Considerations and challenges in studying liquid-liquid phase separation and biomolecular condensates. Cell, 176, 419-434. PMID: 30682370
2. Banani, S.F., Lee, H.O., Hyman, A.A. and Rosen, M.K. (2017) Biomolecular condensates: organizers of cellular biochemistry. Nat. Rev. Mol. Cell Biol. 18, 285-298. PMID: 28225081
3. Banani, S.F., Rice, A.M., Peeples, W.B., Lin, Y., Jain, S., Parker, R. and Rosen, M.K. (2016) Compositional control of phase-separated cellular bodies. Cell, 166, 651-663. PMID: 27374333
4. Hyman, A.A. and Simons, K. (2012) Cell biology. Beyond oil and water--phase transitions in cells. Science, 337, 1047-1049. PMID: 22936764
5. Hofweber, M., Hutten, S., Bourgeois, B., Spreitzer, E., Niedner-Boblenz, A., Schifferer, M., Ruepp, M.D., Simons, M., Niessing, D., Madl, T. et al. (2018) Phase Separation of FUS Is Suppressed by Its Nuclear Import Receptor and Arginine Methylation. Cell, 173, 706-719 e713. PMID: 29677514
6. Murray, D.T., Kato, M., Lin, Y., Thurber, K.R., Hung, I., McKnight, S.L. and Tycko, R. (2017) Structure of FUS Protein Fibrils and Its Relevance to Self-Assembly and Phase Separation of Low-Complexity Domains. Cell, 171, 615-627 e61. PMID: 28942918
7. Guo, L., Kim, H.J., Wang, H., Monaghan, J., Freyermuth, F., Sung, J.C., O'Donovan, K., Fare, C.M., Diaz, Z., Singh, N. et al. (2018) Nuclear-Import Receptors Reverse Aberrant Phase Transitions of RNA-Binding Proteins with Prion-like Domains. Cell, 173, 677-692 e20. PMID: 29677512
8. Yoshizawa, T., Ali, R., Jiou, J., Fung, H.Y.J., Burke, K.A., Kim, S.J., Lin, Y., Peeples, W.B., Saltzberg, D., Soniat, M. et al. (2018) Nuclear Import Receptor Inhibits Phase Separation of FUS through Binding to Multiple Sites. Cell, 173, 693-705 e22. PMID: 29677513
9. Patel, A., Lee, H.O., Jawerth, L., Maharana, S., Jahnel, M., Hein, M.Y., Stoynov, S., Mahamid, J., Saha, S., Franzmann, T.M. et al. (2015) A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation. Cell, 57, 162, 1066-1077. PMID: 26317470


There are 26 genes.  Reviewed (0 or Unreviewed (26

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Beb-0711
BB8028_0002g13470
2
LLPS-Beb-0536
BB8028_0001g04320
A0A2N6NZI3
BM221_000094
3
LLPS-Beb-0008
BB8028_0006g00220
A0A2N6P389
BM221_001413
4
LLPS-Beb-1316
BB8028_0006g07650
A0A2N6NJN3
BM221_007147
5
LLPS-Beb-1610
BB8028_0002g16290
A0A2N6NFQ6
CIRBP
6
LLPS-Beb-0633
BB8028_0003g12690
A0A2N6NRD1
Cstf2
7
LLPS-Beb-0340
BB8028_0001g04540
A0A2N6NZM6
dcp2
8
LLPS-Beb-0162
BB8028_0003g02330
A0A2N6NKN3
DHH1
9
LLPS-Beb-0952
BB8028_0002g09880
A0A2N6NSP0
GAR1
10
LLPS-Beb-0102
BB8028_0003g01890
A0A2N6NKI1
kap95
11
LLPS-Beb-0863
BB8028_0002g01090
A0A2N6NVB3
LSM4
12
LLPS-Beb-0302
BB8028_0003g03730
A0A2N6NL66
MED36B
13
LLPS-Beb-0460
BB8028_0002g16080
A0A2N6NFS7
NSP1
14
LLPS-Beb-0836
BB8028_0007g05840
A0A2N6NBB7
NUP145_1
15
LLPS-Beb-0416
BB8028_0007g01460
A0A2N6NIM9
PAB1
16
LLPS-Beb-1205
BB8028_0002g10030
A0A2N6NSQ5
pdcA_1
17
LLPS-Beb-0422
BB8028_0002g12010
A0A2N6NAD5
pki1
18
LLPS-Beb-0856
BB8028_0006g04440
A0A2N6NDX0
RL25
19
LLPS-Beb-0540
BB8028_0002g14920
A0A2N6NFD2
rpb1
20
LLPS-Beb-0053
BB8028_0004g03450
A0A2N6NYV9
rpl-5
21
LLPS-Beb-0593
BB8028_0005g06570
A0A2N6NMG8
scw1
22
LLPS-Beb-1580
BB8028_0007g05940
A0A2N6NBB0
sup35
23
LLPS-Beb-0586
BB8028_0008g02130
A0A2N6P1W8
tif471
24
LLPS-Beb-1010
BB8028_0008g02190
A0A2N6P1V6
UBP1_0
25
LLPS-Beb-1027
BB8028_0004g10370
A0A2N6NWT2
xpo1
26
LLPS-Beb-1226
BB8028_0003g09590
A0A2N6NQA8
znf207