Rhinopithecus bieti      Paraspeckle


※ Paraspeckle introduction

    Paraspeckles are mammalian-specific nuclear bodies that often lie adjacent to splicing speckles, containing several multifunctional proteins, including PSF (PTB-associated splicing factor), p54nrb, PSP1andRBM14/CoAA/PSP2 (here- after referred to CoAA) (1), the long noncoding RNA NEAT1 assembles these protein components and is critical for paraspeckle formation. DIS3 was proved to be involved in controlling the formation of paraspeckles, nuclear bodies that are organized around NEAT1 lncRNA, whose short form was overexpressed in cells with mutated DIS3 (2). Paraspeckles regulate gene expression through a number of mechanisms, including sequestration of specific transcription factors and/or hyperedited mRNAs (3). Besides, RNA editing by the enzyme ADAR (Adenosine deaminase acting on RNA) was proved to occur in paraspeckles (4).

Reference
1. Chang, S. H., Chang, W. L., Lu, C. C., & Tarn, W. Y. (2014) Alanine repeats influence protein localization in splicing speckles and paraspeckles. Nucleic Acids Res, 42(22), 13788-13798. PMID: 25414336
2. Szczepinska, T., Kalisiak, K., Tomecki, R., Labno, A., Borowski, L. S., Kulinski, T. M., et al. (2015) DIS3 shapes the RNA polymerase II transcriptome in humans by degrading a variety of unwanted transcripts. Genome Res, 25(11), 1622-1633. PMID: 26294688
3. Adriaens, C., Standaert, L., Barra, J., Latil, M., Verfaillie, A., Kalev, P., et al. (2016) p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity. Nat Med, 22(8), 861-868. PMID: 27376578
4. Banerjee, A., Vest, K. E., Pavlath, G. K., & Corbett, A. H. (2017) Nuclear poly(A) binding protein 1 (PABPN1) and Matrin3 interact in muscle cells and regulate RNA processing. Nucleic Acids Res, 45(18), 10706-10725. PMID: 28977530


There are 32 genes.  Reviewed (0 or Unreviewed (32

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Rhb-0129
ENSRBIG00000042117.1
A0A2K6MML6
2
LLPS-Rhb-4003
ENSRBIG00000039547.1
A0A2K6M6N6
3
LLPS-Rhb-1201
ENSRBIG00000039011.1
A0A2K6M3F2
CHMP6
4
LLPS-Rhb-1563
ENSRBIG00000042827.1
A0A2K6MSB1
CPSF6
5
LLPS-Rhb-1403
ENSRBIG00000029680.1
A0A2K6KJZ2
CYBA
6
LLPS-Rhb-2300
ENSRBIG00000041202.1
A0A2K6MH68
DHX9
7
LLPS-Rhb-0093
ENSRBIG00000034236.1
A0A2K6LAH1
DIS3
8
LLPS-Rhb-0311
ENSRBIG00000031124.1
A0A2K6KS82
ENOX1
9
LLPS-Rhb-0515
ENSRBIG00000036916.1
A0A2K6LRA1
FAM53A
10
LLPS-Rhb-4463
ENSRBIG00000035026.1
A0A2K6LF79
FAM53B
11
LLPS-Rhb-0186
ENSRBIG00000036327.1
A0A2K6LMU6
FOS
12
LLPS-Rhb-1468
ENSRBIG00000042196.1
A0A2K6MN44
FUS
13
LLPS-Rhb-3231
ENSRBIG00000026904.1
A0A2K6K5Z5
GATA1
14
LLPS-Rhb-1613
ENSRBIG00000040601.1
A0A2K6MD36
HECTD3
15
LLPS-Rhb-2163
ENSRBIG00000029387.1
A0A2K6KIP1
HNRNPA1
16
LLPS-Rhb-4325
ENSRBIG00000029845.1
A0A2K6KKS7
IQCN
17
LLPS-Rhb-3755
ENSRBIG00000017443.1
A0A2K6JXG1
KLF4
18
LLPS-Rhb-0150
ENSRBIG00000012004.1
A0A2K6JTW4
LMNB2
19
LLPS-Rhb-1136
ENSRBIG00000037966.1
A0A2K6LXA4
NONO
20
LLPS-Rhb-0686
ENSRBIG00000036057.1
A0A2K6LLB9
PSPC1
21
LLPS-Rhb-0665
ENSRBIG00000043267.1
A0A2K6MV28
RBM14
22
LLPS-Rhb-1461
ENSRBIG00000019394.1
A0A2K6JYR0
RBM4B
23
LLPS-Rhb-2927
ENSRBIG00000042570.1
A0A2K6MQK8
SCYL1
24
LLPS-Rhb-0706
ENSRBIG00000035286.1
A0A2K6LGK9
SFPQ
25
LLPS-Rhb-4777
ENSRBIG00000029390.1
A0A2K6KJN4
SH2B1
26
LLPS-Rhb-2371
ENSRBIG00000042971.1
A0A2K6MTC2
SRSF11
27
LLPS-Rhb-0817
ENSRBIG00000034783.1
A0A2K6LE20
TARDBP
28
LLPS-Rhb-0707
ENSRBIG00000038164.1
A0A2K6LYM5
TP53
29
LLPS-Rhb-2640
ENSRBIG00000036016.1
A0A2K6LL34
UVSSA
30
LLPS-Rhb-2729
ENSRBIG00000027345.1
A0A2K6K6Y2
ZC3H8
31
LLPS-Rhb-1894
ENSRBIG00000031313.1
A0A2K6KT15
ZNF24
32
LLPS-Rhb-3628
ENSRBIG00000026483.1
A0A2K6K4Z9
ZNF444