Papio anubis      Paraspeckle


※ Paraspeckle introduction

    Paraspeckles are mammalian-specific nuclear bodies that often lie adjacent to splicing speckles, containing several multifunctional proteins, including PSF (PTB-associated splicing factor), p54nrb, PSP1andRBM14/CoAA/PSP2 (here- after referred to CoAA) (1), the long noncoding RNA NEAT1 assembles these protein components and is critical for paraspeckle formation. DIS3 was proved to be involved in controlling the formation of paraspeckles, nuclear bodies that are organized around NEAT1 lncRNA, whose short form was overexpressed in cells with mutated DIS3 (2). Paraspeckles regulate gene expression through a number of mechanisms, including sequestration of specific transcription factors and/or hyperedited mRNAs (3). Besides, RNA editing by the enzyme ADAR (Adenosine deaminase acting on RNA) was proved to occur in paraspeckles (4).

Reference
1. Chang, S. H., Chang, W. L., Lu, C. C., & Tarn, W. Y. (2014) Alanine repeats influence protein localization in splicing speckles and paraspeckles. Nucleic Acids Res, 42(22), 13788-13798. PMID: 25414336
2. Szczepinska, T., Kalisiak, K., Tomecki, R., Labno, A., Borowski, L. S., Kulinski, T. M., et al. (2015) DIS3 shapes the RNA polymerase II transcriptome in humans by degrading a variety of unwanted transcripts. Genome Res, 25(11), 1622-1633. PMID: 26294688
3. Adriaens, C., Standaert, L., Barra, J., Latil, M., Verfaillie, A., Kalev, P., et al. (2016) p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity. Nat Med, 22(8), 861-868. PMID: 27376578
4. Banerjee, A., Vest, K. E., Pavlath, G. K., & Corbett, A. H. (2017) Nuclear poly(A) binding protein 1 (PABPN1) and Matrin3 interact in muscle cells and regulate RNA processing. Nucleic Acids Res, 45(18), 10706-10725. PMID: 28977530


There are 30 genes.  Reviewed (0 or Unreviewed (30

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Paa-0105
ENSPANG00000033918.1
A0A2I3MM35
2
LLPS-Paa-0497
ENSPANG00000010434.2
A0A096MSQ8
3
LLPS-Paa-1169
ENSPANG00000035017.1
A0A2I3LZM6
4
LLPS-Paa-4706
ENSPANG00000023326.2
A0A2I3LGY4
5
LLPS-Paa-3702
ENSPANG00000019601.2
A0A2I3LU21
CHMP6
6
LLPS-Paa-0621
ENSPANG00000011641.2
A0A096MY11
CPSF6
7
LLPS-Paa-4146
ENSPANG00000032558.1
A0A2I3MQ20
CYBA
8
LLPS-Paa-1385
ENSPANG00000012826.2
A0A096NWR7
DHX9
9
LLPS-Paa-2444
ENSPANG00000010053.2
A0A096NR29
DIS3
10
LLPS-Paa-3879
ENSPANG00000017128.2
A0A2I3N264
ENOX1
11
LLPS-Paa-4139
ENSPANG00000020344.3
A0A096ML36
FAM53A
12
LLPS-Paa-3941
ENSPANG00000020334.2
A0A2I3NID5
FAM53B
13
LLPS-Paa-1375
ENSPANG00000020551.2
A0A096NS52
FOS
14
LLPS-Paa-1176
ENSPANG00000021275.2
A0A096NHY1
FUS
15
LLPS-Paa-3492
ENSPANG00000017368.2
A0A096N377
GATA1
16
LLPS-Paa-4029
ENSPANG00000022037.2
A0A096MST9
HECTD3
17
LLPS-Paa-4009
ENSPANG00000025718.2
A0A2I3N0B3
KLF4
18
LLPS-Paa-1031
ENSPANG00000013393.2
A0A0A0MV39
LMNB2
19
LLPS-Paa-0255
ENSPANG00000004924.2
A0A096MNJ6
RBM14
20
LLPS-Paa-0266
ENSPANG00000020672.2
A0A096N4G9
RBM4B
21
LLPS-Paa-3448
ENSPANG00000011369.2
A0A2I3MLJ7
SCYL1
22
LLPS-Paa-0093
ENSPANG00000021153.3
A0A2I3M9E3
SH2B1
23
LLPS-Paa-0591
ENSPANG00000018677.2
A0A096N8C2
SRSF11
24
LLPS-Paa-3304
ENSPANG00000017459.3
A0A096NBQ0
TARDBP
25
LLPS-Paa-1329
ENSPANG00000024061.2
A0A2I3MCI3
TP53
26
LLPS-Paa-1422
ENSPANG00000019190.2
A0A096MN70
UVSSA
27
LLPS-Paa-1616
ENSPANG00000019077.2
A0A096NAP9
XIAP
28
LLPS-Paa-1841
ENSPANG00000016995.3
A0A096NA91
ZC3H8
29
LLPS-Paa-1555
ENSPANG00000017683.2
A0A096N8R3
ZNF24
30
LLPS-Paa-1514
ENSPANG00000014394.2
A0A0A0MTY8
ZNF444