Mustela putorius furo      Paraspeckle


※ Paraspeckle introduction

    Paraspeckles are mammalian-specific nuclear bodies that often lie adjacent to splicing speckles, containing several multifunctional proteins, including PSF (PTB-associated splicing factor), p54nrb, PSP1andRBM14/CoAA/PSP2 (here- after referred to CoAA) (1), the long noncoding RNA NEAT1 assembles these protein components and is critical for paraspeckle formation. DIS3 was proved to be involved in controlling the formation of paraspeckles, nuclear bodies that are organized around NEAT1 lncRNA, whose short form was overexpressed in cells with mutated DIS3 (2). Paraspeckles regulate gene expression through a number of mechanisms, including sequestration of specific transcription factors and/or hyperedited mRNAs (3). Besides, RNA editing by the enzyme ADAR (Adenosine deaminase acting on RNA) was proved to occur in paraspeckles (4).

Reference
1. Chang, S. H., Chang, W. L., Lu, C. C., & Tarn, W. Y. (2014) Alanine repeats influence protein localization in splicing speckles and paraspeckles. Nucleic Acids Res, 42(22), 13788-13798. PMID: 25414336
2. Szczepinska, T., Kalisiak, K., Tomecki, R., Labno, A., Borowski, L. S., Kulinski, T. M., et al. (2015) DIS3 shapes the RNA polymerase II transcriptome in humans by degrading a variety of unwanted transcripts. Genome Res, 25(11), 1622-1633. PMID: 26294688
3. Adriaens, C., Standaert, L., Barra, J., Latil, M., Verfaillie, A., Kalev, P., et al. (2016) p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity. Nat Med, 22(8), 861-868. PMID: 27376578
4. Banerjee, A., Vest, K. E., Pavlath, G. K., & Corbett, A. H. (2017) Nuclear poly(A) binding protein 1 (PABPN1) and Matrin3 interact in muscle cells and regulate RNA processing. Nucleic Acids Res, 45(18), 10706-10725. PMID: 28977530


There are 32 genes.  Reviewed (0 or Unreviewed (32

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Mup-0461
ENSMPUG00000004035.1
M3XY50
2
LLPS-Mup-0778
ENSMPUG00000012830.1
M3YN26
3
LLPS-Mup-1338
ENSMPUG00000006717.1
M3Y5R2
4
LLPS-Mup-1626
ENSMPUG00000014931.1
M3YU10
5
LLPS-Mup-2613
ENSMPUG00000006775.1
M3Y5X0
6
LLPS-Mup-3683
ENSMPUG00000001354.1
M3XQJ2
7
LLPS-Mup-3269
ENSMPUG00000011889.1
M3YKE2
CHMP6
8
LLPS-Mup-1280
ENSMPUG00000017502.1
M3Z1D0
CPSF6
9
LLPS-Mup-4362
ENSMPUG00000008126.1
M3Y9R2
CYBA
10
LLPS-Mup-0472
ENSMPUG00000011544.1
M3YJE6
DHX9
11
LLPS-Mup-1916
ENSMPUG00000010253.1
M3YFS1
DIS3
12
LLPS-Mup-4099
ENSMPUG00000001695.1
M3XRH8
ENOX1
13
LLPS-Mup-1984
ENSMPUG00000011145.1
M3YI97
FAM53A
14
LLPS-Mup-3378
ENSMPUG00000002735.1
M3XUF6
FAM53B
15
LLPS-Mup-0411
ENSMPUG00000009153.1
M3YCL9
FOS
16
LLPS-Mup-0587
ENSMPUG00000013656.1
M3YQE4
GATA1
17
LLPS-Mup-0020
ENSMPUG00000013289.1
M3YPD3
HECTD3
18
LLPS-Mup-0421
ENSMPUG00000015591.1
M3YVX1
IQCN
19
LLPS-Mup-3258
ENSMPUG00000007236.1
M3Y772
KLF4
20
LLPS-Mup-0126
ENSMPUG00000006649.1
M3Y5J4
LMNB2
21
LLPS-Mup-1765
ENSMPUG00000004937.1
M3Y0P7
NONO
22
LLPS-Mup-0813
ENSMPUG00000013347.1
M3YPJ0
PSPC1
23
LLPS-Mup-2991
ENSMPUG00000003440.1
M3XWF9
RBM14
24
LLPS-Mup-3655
ENSMPUG00000003443.1
M3XWG2
RBM4
25
LLPS-Mup-2251
ENSMPUG00000003450.1
M3XWG9
RBM4B
26
LLPS-Mup-3639
ENSMPUG00000011957.1
M3YKK8
SCYL1
27
LLPS-Mup-3470
ENSMPUG00000012822.1
M3YN19
SH2B1
28
LLPS-Mup-0530
ENSMPUG00000000892.1
M3XP88
SRSF11
29
LLPS-Mup-2360
ENSMPUG00000009017.1
M3YC88
TP53
30
LLPS-Mup-3988
ENSMPUG00000011171.1
M3YIC3
UVSSA
31
LLPS-Mup-2476
ENSMPUG00000009562.1
M3YDS8
ZC3H8
32
LLPS-Mup-0226
ENSMPUG00000001157.1
M3XPZ6
ZNF24