Mus musculus      Paraspeckle


※ Paraspeckle introduction

    Paraspeckles are mammalian-specific nuclear bodies that often lie adjacent to splicing speckles, containing several multifunctional proteins, including PSF (PTB-associated splicing factor), p54nrb, PSP1andRBM14/CoAA/PSP2 (here- after referred to CoAA) (1), the long noncoding RNA NEAT1 assembles these protein components and is critical for paraspeckle formation. DIS3 was proved to be involved in controlling the formation of paraspeckles, nuclear bodies that are organized around NEAT1 lncRNA, whose short form was overexpressed in cells with mutated DIS3 (2). Paraspeckles regulate gene expression through a number of mechanisms, including sequestration of specific transcription factors and/or hyperedited mRNAs (3). Besides, RNA editing by the enzyme ADAR (Adenosine deaminase acting on RNA) was proved to occur in paraspeckles (4).

Reference
1. Chang, S. H., Chang, W. L., Lu, C. C., & Tarn, W. Y. (2014) Alanine repeats influence protein localization in splicing speckles and paraspeckles. Nucleic Acids Res, 42(22), 13788-13798. PMID: 25414336
2. Szczepinska, T., Kalisiak, K., Tomecki, R., Labno, A., Borowski, L. S., Kulinski, T. M., et al. (2015) DIS3 shapes the RNA polymerase II transcriptome in humans by degrading a variety of unwanted transcripts. Genome Res, 25(11), 1622-1633. PMID: 26294688
3. Adriaens, C., Standaert, L., Barra, J., Latil, M., Verfaillie, A., Kalev, P., et al. (2016) p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity. Nat Med, 22(8), 861-868. PMID: 27376578
4. Banerjee, A., Vest, K. E., Pavlath, G. K., & Corbett, A. H. (2017) Nuclear poly(A) binding protein 1 (PABPN1) and Matrin3 interact in muscle cells and regulate RNA processing. Nucleic Acids Res, 45(18), 10706-10725. PMID: 28977530


There are 34 genes.  Reviewed (12 or Unreviewed (22

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Mum-3229
ENSMUSG00000025371.12
P0C0A3
Chmp6
2
LLPS-Mum-1752
ENSMUSG00000042699.11
O70133
Dhx9
3
LLPS-Mum-0246
ENSMUSG00000030795.18
P56959
Fus
4
LLPS-Mum-0688
ENSMUSG00000092232.1
D3Z5F7
Gm20521
5
LLPS-Mum-2872
ENSMUSG00000046434.16
P49312
Hnrnpa1
6
LLPS-Mum-2291
ENSMUSG00000031311.17
Q99K48
Nono
7
LLPS-Mum-2372
ENSMUSG00000021938.12
Q8R326
Pspc1
8
LLPS-Mum-0917
ENSMUSG00000006456.10
Q8C2Q3
Rbm14
9
LLPS-Mum-2542
ENSMUSG00000028820.13
Q8VIJ6
Sfpq
10
LLPS-Mum-1443
ENSMUSG00000041459.15
Q921F2
Tardbp
11
LLPS-Mum-2526
ENSMUSG00000059552.13
P02340
Tp53
12
LLPS-Mum-1456
ENSMUSG00000027387.11
Q9JJ48
Zc3h8
13
LLPS-Mum-1521
ENSMUSG00000055531.12
Q6NVF9
Cpsf6
14
LLPS-Mum-3463
ENSMUSG00000006519.11
Q61462
Cyba
15
LLPS-Mum-1658
ENSMUSG00000033166.11
Q9CSH3
Dis3
16
LLPS-Mum-3989
ENSMUSG00000022012.9
Q8BHR2
Enox1
17
LLPS-Mum-3655
ENSMUSG00000037339.17
E9PV82
Fam53a
18
LLPS-Mum-3466
ENSMUSG00000030956.15
Q8BGR5
Fam53b
19
LLPS-Mum-2378
ENSMUSG00000021250.13
P01101
Fos
20
LLPS-Mum-2630
ENSMUSG00000031162.14
P17679
Gata1
21
LLPS-Mum-3311
ENSMUSG00000046861.9
Q3U487
Hectd3
22
LLPS-Mum-3741
ENSMUSG00000110622.1
A0A1D5RMD1
Iqcn
23
LLPS-Mum-4708
ENSMUSG00000003032.8
Q60793
Klf4
24
LLPS-Mum-0894
ENSMUSG00000062075.13
P21619
Lmnb2
25
LLPS-Mum-2037
ENSMUSG00000033099.10
Q8BG17
Nol12
26
LLPS-Mum-2060
ENSMUSG00000094936.7
Q8C7Q4
Rbm4
27
LLPS-Mum-2266
ENSMUSG00000033760.16
Q8VE92
Rbm4b
28
LLPS-Mum-4239
ENSMUSG00000024941.8
Q9EQC5
Scyl1
29
LLPS-Mum-4936
ENSMUSG00000030733.10
Q91ZM2
Sh2b1
30
LLPS-Mum-0897
ENSMUSG00000055436.18
E9Q6E5
Srsf11
31
LLPS-Mum-4943
ENSMUSG00000037355.14
Q9D479
Uvssa
32
LLPS-Mum-4669
ENSMUSG00000025860.15
Q60989
Xiap
33
LLPS-Mum-4703
ENSMUSG00000044876.15
Q3TDV8
Zfp444
34
LLPS-Mum-2653
ENSMUSG00000051469.14
Q91VN1
Znf24