Bos taurus      Paraspeckle


※ Paraspeckle introduction

    Paraspeckles are mammalian-specific nuclear bodies that often lie adjacent to splicing speckles, containing several multifunctional proteins, including PSF (PTB-associated splicing factor), p54nrb, PSP1andRBM14/CoAA/PSP2 (here- after referred to CoAA) (1), the long noncoding RNA NEAT1 assembles these protein components and is critical for paraspeckle formation. DIS3 was proved to be involved in controlling the formation of paraspeckles, nuclear bodies that are organized around NEAT1 lncRNA, whose short form was overexpressed in cells with mutated DIS3 (2). Paraspeckles regulate gene expression through a number of mechanisms, including sequestration of specific transcription factors and/or hyperedited mRNAs (3). Besides, RNA editing by the enzyme ADAR (Adenosine deaminase acting on RNA) was proved to occur in paraspeckles (4).

Reference
1. Chang, S. H., Chang, W. L., Lu, C. C., & Tarn, W. Y. (2014) Alanine repeats influence protein localization in splicing speckles and paraspeckles. Nucleic Acids Res, 42(22), 13788-13798. PMID: 25414336
2. Szczepinska, T., Kalisiak, K., Tomecki, R., Labno, A., Borowski, L. S., Kulinski, T. M., et al. (2015) DIS3 shapes the RNA polymerase II transcriptome in humans by degrading a variety of unwanted transcripts. Genome Res, 25(11), 1622-1633. PMID: 26294688
3. Adriaens, C., Standaert, L., Barra, J., Latil, M., Verfaillie, A., Kalev, P., et al. (2016) p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity. Nat Med, 22(8), 861-868. PMID: 27376578
4. Banerjee, A., Vest, K. E., Pavlath, G. K., & Corbett, A. H. (2017) Nuclear poly(A) binding protein 1 (PABPN1) and Matrin3 interact in muscle cells and regulate RNA processing. Nucleic Acids Res, 45(18), 10706-10725. PMID: 28977530


There are 32 genes.  Reviewed (6 or Unreviewed (26

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Bot-0241
ENSBTAG00000019821.5
Q28141
DHX9
2
LLPS-Bot-0077
ENSBTAG00000005757.6
Q28009
FUS
3
LLPS-Bot-0118
ENSBTAG00000051118.1
Q2KIV0
NOL12
4
LLPS-Bot-0244
ENSBTAG00000012152.5
G3N361
NONO
5
LLPS-Bot-0175
ENSBTAG00000003934.6
Q1LZD9
PSPC1
6
LLPS-Bot-0222
ENSBTAG00000016328.6
E1BQ37
SFPQ
7
LLPS-Bot-0715
ENSBTAG00000010255.5
8
LLPS-Bot-4123
ENSBTAG00000054700.1
9
LLPS-Bot-4737
ENSBTAG00000046111.2
10
LLPS-Bot-2013
ENSBTAG00000038745.2
Q148L0
CHMP6
11
LLPS-Bot-0706
ENSBTAG00000007323.5
Q0P5D2
CPSF6
12
LLPS-Bot-0856
ENSBTAG00000051907.1
O46521
CYBA
13
LLPS-Bot-1660
ENSBTAG00000019889.6
F1N1R4
DIS3
14
LLPS-Bot-4561
ENSBTAG00000012434.6
F1N0M8
ENOX1
15
LLPS-Bot-2734
ENSBTAG00000004322.6
O77628
FOS
16
LLPS-Bot-1061
ENSBTAG00000003184.5
E1BI59
GATA1
17
LLPS-Bot-2707
ENSBTAG00000019013.5
F1MJS5
HECTD3
18
LLPS-Bot-4070
ENSBTAG00000001553.6
P09867
HNRNPA1
19
LLPS-Bot-4620
ENSBTAG00000020355.6
A7YWE2
KLF4
20
LLPS-Bot-0817
ENSBTAG00000013624.6
F1MJI7
LMNB2
21
LLPS-Bot-4173
ENSBTAG00000006884.6
Q28165
PABPN1
22
LLPS-Bot-1754
ENSBTAG00000001225.4
F1MI47
RBM14
23
LLPS-Bot-0930
ENSBTAG00000031688.4
Q3MHX3
RBM4
24
LLPS-Bot-3567
ENSBTAG00000000423.5
Q2KIV3
RBM4B
25
LLPS-Bot-0559
ENSBTAG00000006740.5
F1MVK2
SCYL1
26
LLPS-Bot-2706
ENSBTAG00000019219.6
F1MJV1
SH2B1
27
LLPS-Bot-3172
ENSBTAG00000015474.6
Q148M1
SRSF11
28
LLPS-Bot-0302
ENSBTAG00000003697.6
G3MX91
TARDBP
29
LLPS-Bot-3076
ENSBTAG00000001069.4
P67939
TP53
30
LLPS-Bot-1151
ENSBTAG00000012577.5
F1MX48
UVSSA
31
LLPS-Bot-4279
ENSBTAG00000040350.4
G3MWG5
XIAP
32
LLPS-Bot-0959
ENSBTAG00000015965.5
Q17QY2
ZC3H8