Aotus nancymaae      Paraspeckle


※ Paraspeckle introduction

    Paraspeckles are mammalian-specific nuclear bodies that often lie adjacent to splicing speckles, containing several multifunctional proteins, including PSF (PTB-associated splicing factor), p54nrb, PSP1andRBM14/CoAA/PSP2 (here- after referred to CoAA) (1), the long noncoding RNA NEAT1 assembles these protein components and is critical for paraspeckle formation. DIS3 was proved to be involved in controlling the formation of paraspeckles, nuclear bodies that are organized around NEAT1 lncRNA, whose short form was overexpressed in cells with mutated DIS3 (2). Paraspeckles regulate gene expression through a number of mechanisms, including sequestration of specific transcription factors and/or hyperedited mRNAs (3). Besides, RNA editing by the enzyme ADAR (Adenosine deaminase acting on RNA) was proved to occur in paraspeckles (4).

Reference
1. Chang, S. H., Chang, W. L., Lu, C. C., & Tarn, W. Y. (2014) Alanine repeats influence protein localization in splicing speckles and paraspeckles. Nucleic Acids Res, 42(22), 13788-13798. PMID: 25414336
2. Szczepinska, T., Kalisiak, K., Tomecki, R., Labno, A., Borowski, L. S., Kulinski, T. M., et al. (2015) DIS3 shapes the RNA polymerase II transcriptome in humans by degrading a variety of unwanted transcripts. Genome Res, 25(11), 1622-1633. PMID: 26294688
3. Adriaens, C., Standaert, L., Barra, J., Latil, M., Verfaillie, A., Kalev, P., et al. (2016) p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity. Nat Med, 22(8), 861-868. PMID: 27376578
4. Banerjee, A., Vest, K. E., Pavlath, G. K., & Corbett, A. H. (2017) Nuclear poly(A) binding protein 1 (PABPN1) and Matrin3 interact in muscle cells and regulate RNA processing. Nucleic Acids Res, 45(18), 10706-10725. PMID: 28977530


There are 34 genes.  Reviewed (0 or Unreviewed (34

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Aon-0418
ENSANAG00000025653.1
A0A2K5D3L8
2
LLPS-Aon-0462
ENSANAG00000018690.1
A0A2K5C1L7
3
LLPS-Aon-1016
ENSANAG00000027438.1
A0A2K5DEB4
4
LLPS-Aon-1392
ENSANAG00000035249.1
A0A2K5EQY0
5
LLPS-Aon-2022
ENSANAG00000021591.1
A0A2K5CEH5
6
LLPS-Aon-2092
ENSANAG00000023645.1
A0A2K5CRR6
7
LLPS-Aon-2287
ENSANAG00000030513.1
A0A2K5DXG0
8
LLPS-Aon-2578
ENSANAG00000033266.1
A0A2K5ED14
9
LLPS-Aon-3136
ENSANAG00000033986.1
A0A2K5EHD8
10
LLPS-Aon-3383
ENSANAG00000021576.1
A0A2K5CEA5
11
LLPS-Aon-3434
ENSANAG00000023483.1
A0A2K5CQV3
12
LLPS-Aon-4111
ENSANAG00000026709.1
A0A2K5D9R0
CHMP6
13
LLPS-Aon-0052
ENSANAG00000019240.1
A0A2K5C2C5
CPSF6
14
LLPS-Aon-1397
ENSANAG00000037939.1
A0A2K5F720
CYBA
15
LLPS-Aon-3009
ENSANAG00000030279.1
A0A2K5DW45
DHX9
16
LLPS-Aon-0332
ENSANAG00000025580.1
A0A2K5D3H7
DIS3
17
LLPS-Aon-4439
ENSANAG00000031616.1
A0A2K5E302
ENOX1
18
LLPS-Aon-3106
ENSANAG00000022971.1
A0A2K5CMP7
FAM53A
19
LLPS-Aon-3474
ENSANAG00000023364.1
A0A2K5CQ43
FAM53B
20
LLPS-Aon-2661
ENSANAG00000029534.1
A0A2K5DRK6
FOS
21
LLPS-Aon-2174
ENSANAG00000032139.1
A0A2K5E627
GATA1
22
LLPS-Aon-2663
ENSANAG00000029842.1
A0A2K5DTF1
HECTD3
23
LLPS-Aon-4299
ENSANAG00000024831.1
A0A2K5CYR3
IQCN
24
LLPS-Aon-1479
ENSANAG00000034670.1
A0A2K5ELF0
KLF4
25
LLPS-Aon-0733
ENSANAG00000029909.1
A0A2K5DTV1
LMNB2
26
LLPS-Aon-0645
ENSANAG00000000059.1
A0A2K5BUH6
PSPC1
27
LLPS-Aon-4258
ENSANAG00000035377.1
A0A2K5ERA3
RBM14
28
LLPS-Aon-0271
ENSANAG00000023478.1
A0A2K5CQR6
RBM4B
29
LLPS-Aon-2512
ENSANAG00000030201.1
A0A2K5DVL5
SCYL1
30
LLPS-Aon-1176
ENSANAG00000034202.1
A0A2K5EIZ8
SH2B1
31
LLPS-Aon-2934
ENSANAG00000020676.1
A0A2K5C928
UVSSA
32
LLPS-Aon-4525
ENSANAG00000025926.1
A0A2K5D584
XIAP
33
LLPS-Aon-0801
ENSANAG00000022151.1
A0A2K5CHR4
ZC3H8
34
LLPS-Aon-4392
ENSANAG00000036445.1
A0A2K5EXN9
ZNF444