Zymoseptoria tritici      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 34 genes.  Reviewed (0 or Unreviewed (34

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Zyt-0415
Mycgr3G100881
F9XID1
GSK3
2
LLPS-Zyt-0276
Mycgr3G100024
F9XAA2
MYCGRDRAFT_100024
3
LLPS-Zyt-1221
Mycgr3G101867
F9XQ05
MYCGRDRAFT_101867
4
LLPS-Zyt-1109
Mycgr3G102918
F9X0S3
MYCGRDRAFT_102918
5
LLPS-Zyt-0227
Mycgr3G107156
F9WXY7
MYCGRDRAFT_107156
6
LLPS-Zyt-0162
Mycgr3G107996
F9X4B3
MYCGRDRAFT_107996
7
LLPS-Zyt-0113
Mycgr3G108339
F9X4R1
MYCGRDRAFT_108339
8
LLPS-Zyt-1046
Mycgr3G111551
F9XP67
MYCGRDRAFT_111551
9
LLPS-Zyt-0991
Mycgr3G16155
F9X5I7
MYCGRDRAFT_16155
10
LLPS-Zyt-0925
Mycgr3G18787
F9X648
MYCGRDRAFT_18787
11
LLPS-Zyt-1539
Mycgr3G30914
F9XFJ7
MYCGRDRAFT_30914
12
LLPS-Zyt-0034
Mycgr3G33937
F9WY46
MYCGRDRAFT_33937
13
LLPS-Zyt-1580
Mycgr3G39514
F9X6K8
MYCGRDRAFT_39514
14
LLPS-Zyt-1213
Mycgr3G39599
F9X6Q7
MYCGRDRAFT_39599
15
LLPS-Zyt-0375
Mycgr3G42271
F9XC14
MYCGRDRAFT_42271
16
LLPS-Zyt-0027
Mycgr3G48162
F9XJS8
MYCGRDRAFT_48162
17
LLPS-Zyt-1561
Mycgr3G54621
F9X1X3
MYCGRDRAFT_54621
18
LLPS-Zyt-0500
Mycgr3G59333
F9XBT4
MYCGRDRAFT_59333
19
LLPS-Zyt-0425
Mycgr3G66791
F9WY92
MYCGRDRAFT_66791
20
LLPS-Zyt-0774
Mycgr3G70735
F9X8R6
MYCGRDRAFT_70735
21
LLPS-Zyt-1175
Mycgr3G71455
F9XA45
MYCGRDRAFT_71455
22
LLPS-Zyt-0711
Mycgr3G71536
F9X8J5
MYCGRDRAFT_71536
23
LLPS-Zyt-0720
Mycgr3G71918
F9XBL3
MYCGRDRAFT_71918
24
LLPS-Zyt-1426
Mycgr3G73729
F9XEY2
MYCGRDRAFT_73729
25
LLPS-Zyt-0466
Mycgr3G74522
F9XGV6
MYCGRDRAFT_74522
26
LLPS-Zyt-1012
Mycgr3G75916
F9XKE9
MYCGRDRAFT_75916
27
LLPS-Zyt-0535
Mycgr3G77177
F9XPE0
MYCGRDRAFT_77177
28
LLPS-Zyt-0460
Mycgr3G83408
F9WW30
MYCGRDRAFT_83408
29
LLPS-Zyt-1062
Mycgr3G87579
F9XJM9
MYCGRDRAFT_87579
30
LLPS-Zyt-0248
Mycgr3G87823
F9XLF1
MYCGRDRAFT_87823
31
LLPS-Zyt-0042
Mycgr3G98177
F9WXK7
MYCGRDRAFT_98177
32
LLPS-Zyt-1499
Mycgr3G98404
F9X0V8
MYCGRDRAFT_98404
33
LLPS-Zyt-0561
Mycgr3G99129
F9X3M4
MYCGRDRAFT_99129
34
LLPS-Zyt-0238
Mycgr3G25126
F9X944
SDG2401