Xenopus tropicalis      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 100 genes.  Reviewed (0 or Unreviewed (100

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Xet-0283
ENSXETG00000012371.3
F7BMD3
2
LLPS-Xet-2038
ENSXETG00000032207.1
F7CJU6
3
LLPS-Xet-2214
ENSXETG00000022637.3
F6VM51
4
LLPS-Xet-2734
ENSXETG00000025399.2
F7AJ51
5
LLPS-Xet-3559
ENSXETG00000023755.3
Q6DJB9
ago2
6
LLPS-Xet-3123
ENSXETG00000031078.1
F6TW68
akap17a
7
LLPS-Xet-0573
ENSXETG00000005391.3
Q28FB9
alyref
8
LLPS-Xet-1515
ENSXETG00000032881.1
A4QNM7
anxa10
9
LLPS-Xet-0744
ENSXETG00000015289.3
Q6P7M0
anxa2
10
LLPS-Xet-2075
ENSXETG00000032991.1
B0BMG4
arl6ip4
11
LLPS-Xet-0581
ENSXETG00000000617.3
F7DU67
atr
12
LLPS-Xet-0023
ENSXETG00000020352.3
Q6PBE2
bcas2
13
LLPS-Xet-2816
ENSXETG00000012840.3
F6WZL2
c9orf78
14
LLPS-Xet-0062
ENSXETG00000009357.3
F7EG74
carm1
15
LLPS-Xet-3491
ENSXETG00000024395.3
Q5CZI8
casc3
16
LLPS-Xet-1479
ENSXETG00000012250.3
F6VK61
ccnl1
17
LLPS-Xet-2751
ENSXETG00000007885.3
F7A3D0
cdc5l
18
LLPS-Xet-1264
ENSXETG00000003123.2
F7E741
cdk1
19
LLPS-Xet-2394
ENSXETG00000000481.3
Q28II8
cdk7
20
LLPS-Xet-0340
ENSXETG00000024742.2
Q6GLD8
cdk9
21
LLPS-Xet-2752
ENSXETG00000021807.3
F7AG20
cdkl5
22
LLPS-Xet-2706
ENSXETG00000017656.3
F7C0E3
clk2
23
LLPS-Xet-2059
ENSXETG00000009192.3
F7CIC4
cop1
24
LLPS-Xet-1120
ENSXETG00000020861.3
F6VPH2
csnk1a1
25
LLPS-Xet-0041
ENSXETG00000017319.3
F7DXH1
ctnnbl1
26
LLPS-Xet-1704
ENSXETG00000002498.3
F6WK31
ddx39b
27
LLPS-Xet-0012
ENSXETG00000010405.4
F6ZKV9
ddx46
28
LLPS-Xet-1404
ENSXETG00000006320.2
F6T290
dgcr8
29
LLPS-Xet-0787
ENSXETG00000021559.3
F6RCH6
dnajc17
30
LLPS-Xet-3604
ENSXETG00000023677.3
L7N3S2
dyrk3
31
LLPS-Xet-2581
ENSXETG00000013368.3
F7BYJ3
egf
32
LLPS-Xet-0762
ENSXETG00000017914.3
F7CCB1
erh
33
LLPS-Xet-2077
ENSXETG00000007080.3
Q566M1
fam76b
34
LLPS-Xet-1952
ENSXETG00000005283.3
A9JRM0
fam83h
35
LLPS-Xet-1691
ENSXETG00000003617.4
F6TV09
fancd2
36
LLPS-Xet-2883
ENSXETG00000017742.3
F6U1I1
fanci
37
LLPS-Xet-0049
ENSXETG00000007502.3
F6QTU2
fbxl18
38
LLPS-Xet-3913
ENSXETG00000016775.3
Q28J96
fgfr1
39
LLPS-Xet-0883
ENSXETG00000023119.3
Q0IJ35
frmd8
40
LLPS-Xet-1212
ENSXETG00000001951.3
Q28EL3
fus
41
LLPS-Xet-1185
ENSXETG00000024516.1
Q28IB3
fyttd1
42
LLPS-Xet-0119
ENSXETG00000001856.3
F6XFR9
gli3
43
LLPS-Xet-0684
ENSXETG00000018019.3
F7ACT4
gsk3b
44
LLPS-Xet-0336
ENSXETG00000014449.3
F6VTE9
hif1a
45
LLPS-Xet-1157
ENSXETG00000012170.3
F6TA26
hnrnpa2b1
46
LLPS-Xet-2298
ENSXETG00000011722.2
F7CSL3
hnrnpk
47
LLPS-Xet-1379
ENSXETG00000019175.3
F7AZ65
hsph1
48
LLPS-Xet-0790
ENSXETG00000014290.3
Q6P8G1
ilf2
49
LLPS-Xet-2985
ENSXETG00000011651.3
Q6GL57
ilf3
50
LLPS-Xet-1568
ENSXETG00000004535.3
F7E9S0
ivns1abp
51
LLPS-Xet-1957
ENSXETG00000001594.3
F6W296
kpna2
52
LLPS-Xet-3665
ENSXETG00000021541.2
F6SX24
nagk
53
LLPS-Xet-2207
ENSXETG00000020868.2
F6UXS0
nono
54
LLPS-Xet-0618
ENSXETG00000017642.2
Q6P829
nosip
55
LLPS-Xet-0756
ENSXETG00000023668.3
F7CR39
ogg1
56
LLPS-Xet-1352
ENSXETG00000020623.3
F7CTF7
p2ry12
57
LLPS-Xet-1948
ENSXETG00000014597.3
Q6NVP7
pabpn1
58
LLPS-Xet-0462
ENSXETG00000022434.3
F6RX98
plrg1
59
LLPS-Xet-2493
ENSXETG00000015774.3
Q6DJ99
pnn
60
LLPS-Xet-0275
ENSXETG00000011938.3
Q6GLG2
prpf19
61
LLPS-Xet-1017
ENSXETG00000022259.3
F6ZIA0
prpf8
62
LLPS-Xet-0178
ENSXETG00000011978.2
F6XZS3
psma3
63
LLPS-Xet-0915
ENSXETG00000021661.3
F6YXS8
ptbp1
64
LLPS-Xet-3870
ENSXETG00000001485.3
F7AG79
rapgef1
65
LLPS-Xet-1272
ENSXETG00000018123.3
F6W1I5
rbm17
66
LLPS-Xet-1313
ENSXETG00000022623.3
F6WH71
rbm23
67
LLPS-Xet-1177
ENSXETG00000009623.3
F7AMW0
rbmx2
68
LLPS-Xet-0399
ENSXETG00000024439.2
Q28E41
rnps1
69
LLPS-Xet-3691
ENSXETG00000024657.2
F6T3X2
sarnp
70
LLPS-Xet-3119
ENSXETG00000008434.3
F7DBZ6
sf1
71
LLPS-Xet-0236
ENSXETG00000016144.3
F6VHD9
sf3a1
72
LLPS-Xet-1746
ENSXETG00000024943.2
F7AY00
sf3a2
73
LLPS-Xet-0168
ENSXETG00000022923.2
F7DSS2
sf3a3
74
LLPS-Xet-2187
ENSXETG00000013339.3
F6ZH61
sf3b1
75
LLPS-Xet-1758
ENSXETG00000009682.3
F7BKE4
sfpq
76
LLPS-Xet-0089
ENSXETG00000001243.3
F7B7N1
snrnp200
77
LLPS-Xet-1728
ENSXETG00000022919.3
Q66II8
snrnp70
78
LLPS-Xet-3048
ENSXETG00000002585.2
F6Y3J1
snrpa
79
LLPS-Xet-0106
ENSXETG00000003550.3
F6R4W2
snrpb2
80
LLPS-Xet-2195
ENSXETG00000014115.3
F6QSE4
son
81
LLPS-Xet-1061
ENSXETG00000027799.2
Q6P8B3
spop
82
LLPS-Xet-2979
ENSXETG00000011374.3
F7EUU2
srrm2
83
LLPS-Xet-1344
ENSXETG00000008954.3
Q6DII2
srsf1
84
LLPS-Xet-0814
ENSXETG00000025271.2
Q6P366
srsf2
85
LLPS-Xet-0782
ENSXETG00000001701.3
Q6DF01
srsf3
86
LLPS-Xet-0634
ENSXETG00000025503.1
F6WZ09
srsf6
87
LLPS-Xet-2324
ENSXETG00000025300.2
F6U2A8
srsf7
88
LLPS-Xet-2308
ENSXETG00000026940.2
F6WC61
srsf9
89
LLPS-Xet-1123
ENSXETG00000007642.3
F6Q0N5
stat3.1
90
LLPS-Xet-0370
ENSXETG00000022072.3
Q6DEP7
sumo1
91
LLPS-Xet-1047
ENSXETG00000016577.2
F7AS86
tap1
92
LLPS-Xet-3402
ENSXETG00000023394.3
F6V2S7
tgfbr1
93
LLPS-Xet-0645
ENSXETG00000007511.3
Q6DES6
tra2b
94
LLPS-Xet-2888
ENSXETG00000019435.3
F6Z8I6
ttc14
95
LLPS-Xet-0745
ENSXETG00000019128.3
Q28EQ0
u2af2
96
LLPS-Xet-1478
ENSXETG00000022133.3
B5DEC9
u2surp
97
LLPS-Xet-2655
ENSXETG00000002224.3
F7EP94
xpo1
98
LLPS-Xet-1531
ENSXETG00000017960.3
F6XU94
ythdc1
99
LLPS-Xet-2966
ENSXETG00000000439.3
F7E0Z0
zc3h11a
100
LLPS-Xet-2427
ENSXETG00000002920.3
F7EBX4
znf106