Vigna radiata      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 48 genes.  Reviewed (0 or Unreviewed (48

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Vir-1329
vigra.VC1973A.gnm6.ann1.Vradi0134s00120
A0A1S3TAR3
LOC106753556
2
LLPS-Vir-0267
vigra.VC1973A.gnm6.ann1.Vradi0083s00780
A0A1S3TCI1
LOC106754046
3
LLPS-Vir-0893
vigra.VC1973A.gnm6.ann1.Vradi02g00590
A0A1S3TJK3
LOC106756152
4
LLPS-Vir-1995
vigra.VC1973A.gnm6.ann1.Vradi03g06040
A0A1S3TQ33
LOC106757655
5
LLPS-Vir-2054
vigra.VC1973A.gnm6.ann1.Vradi03g01150
A0A1S3TQ42
LOC106757683
6
LLPS-Vir-2150
vigra.VC1973A.gnm6.ann1.Vradi04g11170
A0A1S3TTY7
LOC106758777
7
LLPS-Vir-0855
vigra.VC1973A.gnm6.ann1.Vradi04g02220
A0A1S3TVW0
LOC106759314
8
LLPS-Vir-0892
vigra.VC1973A.gnm6.ann1.Vradi05g19410
A0A1S3TXI9
LOC106759686
9
LLPS-Vir-1153
vigra.VC1973A.gnm6.ann1.Vradi05g16440
A0A1S3TXL7
LOC106759711
10
LLPS-Vir-0575
vigra.VC1973A.gnm6.ann1.Vradi05g00950
A0A1S3TZB4
LOC106760155
11
LLPS-Vir-0357
vigra.VC1973A.gnm6.ann1.Vradi05g19610
A0A1S3U4F9
LOC106761825
12
LLPS-Vir-1230
vigra.VC1973A.gnm6.ann1.Vradi05g16620
A0A1S3U4E4
LOC106761855
13
LLPS-Vir-1290
vigra.VC1973A.gnm6.ann1.Vradi05g10050
A0A1S3U5N1
LOC106762123
14
LLPS-Vir-0549
vigra.VC1973A.gnm6.ann1.Vradi05g06490
A0A1S3U5Y8
LOC106762172
15
LLPS-Vir-1310
vigra.VC1973A.gnm6.ann1.Vradi05g22320
A0A1S3U6D3
LOC106762283
16
LLPS-Vir-1360
vigra.VC1973A.gnm6.ann1.Vradi06g02610
A0A1S3U9V2
LOC106763120
17
LLPS-Vir-0681
vigra.VC1973A.gnm6.ann1.Vradi01g02310
A0A1S3UBE9
LOC106763637
18
LLPS-Vir-0010
vigra.VC1973A.gnm6.ann1.Vradi06g06750
A0A1S3UC83
LOC106763965
19
LLPS-Vir-1146
vigra.VC1973A.gnm6.ann1.Vradi06g03720
A0A1S3UFA1
LOC106764768
20
LLPS-Vir-1052
vigra.VC1973A.gnm6.ann1.Vradi06g12150
A0A1S3UGX3
LOC106765241
21
LLPS-Vir-0989
vigra.VC1973A.gnm6.ann1.Vradi07g25240
A0A1S3UHE1
LOC106765372
22
LLPS-Vir-1623
vigra.VC1973A.gnm6.ann1.Vradi07g05020
A0A1S3UHH7
LOC106765396
23
LLPS-Vir-0905
vigra.VC1973A.gnm6.ann1.Vradi07g18720
A0A1S3UR73
LOC106768125
24
LLPS-Vir-0810
vigra.VC1973A.gnm6.ann1.Vradi07g02390
A0A1S3USM6
LOC106768331
25
LLPS-Vir-0440
vigra.VC1973A.gnm6.ann1.Vradi07g13350
A0A1S3UVP2
LOC106769171
26
LLPS-Vir-1080
vigra.VC1973A.gnm6.ann1.Vradi08g09390
A0A1S3UY97
LOC106769717
27
LLPS-Vir-1189
vigra.VC1973A.gnm6.ann1.Vradi08g11950
A0A1S3V1N8
LOC106770918
28
LLPS-Vir-2170
vigra.VC1973A.gnm6.ann1.Vradi08g22400
A0A1S3V1R1
LOC106770941
29
LLPS-Vir-0514
vigra.VC1973A.gnm6.ann1.Vradi08g20600
A0A1S3V643
LOC106772019
30
LLPS-Vir-1029
vigra.VC1973A.gnm6.ann1.Vradi08g11620
A0A1S3V651
LOC106772110
31
LLPS-Vir-0928
vigra.VC1973A.gnm6.ann1.Vradi08g21560
A0A1S3V725
LOC106772311
32
LLPS-Vir-1240
vigra.VC1973A.gnm6.ann1.Vradi08g00880
A0A1S3V8D6
LOC106772489
33
LLPS-Vir-0157
vigra.VC1973A.gnm6.ann1.Vradi08g01570
A0A1S3V9F4
LOC106772769
34
LLPS-Vir-0270
vigra.VC1973A.gnm6.ann1.Vradi08g22050
A0A1S3V9Q1
LOC106772839
35
LLPS-Vir-2044
vigra.VC1973A.gnm6.ann1.Vradi01g08820
A0A1S3VB08
LOC106773350
36
LLPS-Vir-0022
vigra.VC1973A.gnm6.ann1.Vradi01g11900
A0A1S3VCX9
LOC106773748
37
LLPS-Vir-0595
vigra.VC1973A.gnm6.ann1.Vradi01g02270
A0A1S3VF73
LOC106774441
38
LLPS-Vir-0527
vigra.VC1973A.gnm6.ann1.Vradi10g01290
A0A1S3VFF3
LOC106774457
39
LLPS-Vir-0660
vigra.VC1973A.gnm6.ann1.Vradi10g10100
A0A1S3VIS5
LOC106775636
40
LLPS-Vir-0832
vigra.VC1973A.gnm6.ann1.Vradi10g04340
A0A1S3VJS7
LOC106775892
41
LLPS-Vir-1708
vigra.VC1973A.gnm6.ann1.Vradi10g12150
A0A1S3VLD8
LOC106776091
42
LLPS-Vir-0084
vigra.VC1973A.gnm6.ann1.Vradi10g11610
A0A1S3VLB0
LOC106776263
43
LLPS-Vir-1011
vigra.VC1973A.gnm6.ann1.Vradi11g06760
A0A1S3VLF8
LOC106776304
44
LLPS-Vir-0218
vigra.VC1973A.gnm6.ann1.Vradi11g01190
A0A1S3VPW4
LOC106777202
45
LLPS-Vir-0213
vigra.VC1973A.gnm6.ann1.Vradi11g05590
A0A1S3VR39
LOC106777673
46
LLPS-Vir-0046
vigra.VC1973A.gnm6.ann1.Vradi11g04630
A0A1S3VRN3
LOC106777737
47
LLPS-Vir-0217
vigra.VC1973A.gnm6.ann1.Vradi02g01610
A0A1S3VWI4
LOC106779030
48
LLPS-Vir-1625
vigra.VC1973A.gnm6.ann1.Vradi0146s00040
A0A1S3W082
LOC106780124