Ursus maritimus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 93 genes.  Reviewed (0 or Unreviewed (93

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Urm-0123
ENSUMAG00000008056.1
2
LLPS-Urm-1481
ENSUMAG00000016384.1
A0A384CBM7
ALYREF
3
LLPS-Urm-1619
ENSUMAG00000020169.1
A0A384BMR4
ANXA10
4
LLPS-Urm-0958
ENSUMAG00000023968.1
A0A384DB73
ANXA2
5
LLPS-Urm-1269
ENSUMAG00000013217.1
A0A384DG31
ATR
6
LLPS-Urm-0292
ENSUMAG00000011929.1
A0A384CMB1
BCAS2
7
LLPS-Urm-3203
ENSUMAG00000024981.1
A0A384DH38
CARM1
8
LLPS-Urm-2105
ENSUMAG00000017697.1
A0A384BYH6
CASC3
9
LLPS-Urm-2646
ENSUMAG00000011392.1
A0A384DDT0
CCNL1
10
LLPS-Urm-3130
ENSUMAG00000005223.1
A0A384C6J6
CDC5L
11
LLPS-Urm-0940
ENSUMAG00000006871.1
A0A384CH70
CDK1
12
LLPS-Urm-2264
ENSUMAG00000007920.1
A0A384C3Z1
CDK7
13
LLPS-Urm-1197
ENSUMAG00000000681.1
A0A384CQP0
CDK9
14
LLPS-Urm-0469
ENSUMAG00000008854.1
A0A384CIQ6
CDKL5
15
LLPS-Urm-1356
ENSUMAG00000019495.1
A0A384CJ10
CLK2
16
LLPS-Urm-1913
ENSUMAG00000005410.1
A0A384C781
CSNK1A1
17
LLPS-Urm-2151
ENSUMAG00000003635.1
A0A384CPF9
CTNNBL1
18
LLPS-Urm-2191
ENSUMAG00000015124.1
A0A384DSX6
DDX39B
19
LLPS-Urm-0929
ENSUMAG00000017446.1
A0A384C4N9
DDX46
20
LLPS-Urm-1598
ENSUMAG00000007398.1
A0A384CLV2
DGCR8
21
LLPS-Urm-2268
ENSUMAG00000003319.1
A0A384DS89
DNAJB1
22
LLPS-Urm-2685
ENSUMAG00000012443.1
A0A384D055
DNAJC17
23
LLPS-Urm-2882
ENSUMAG00000025354.1
A0A384BL15
DYRK3
24
LLPS-Urm-2663
ENSUMAG00000000821.1
A0A384BZR2
EGF
25
LLPS-Urm-1625
ENSUMAG00000016545.1
A0A384CVI5
ERH
26
LLPS-Urm-3103
ENSUMAG00000007226.1
A0A384BVH3
FAM76B
27
LLPS-Urm-3069
ENSUMAG00000018680.1
A0A384CP31
FANCD2
28
LLPS-Urm-3190
ENSUMAG00000006372.1
A0A384BV22
FANCI
29
LLPS-Urm-3318
ENSUMAG00000009245.1
A0A384BQI7
FGFR1
30
LLPS-Urm-2343
ENSUMAG00000003373.1
A0A384DIJ9
FYTTD1
31
LLPS-Urm-2699
ENSUMAG00000009879.1
A0A384D511
GLI3
32
LLPS-Urm-2199
ENSUMAG00000025264.1
A0A384DI01
GSK3B
33
LLPS-Urm-1542
ENSUMAG00000013707.1
A0A384CX19
HIF1A
34
LLPS-Urm-2902
ENSUMAG00000023708.1
A0A384BJR8
HIF3A
35
LLPS-Urm-1977
ENSUMAG00000015157.1
A0A384CL66
HIPK2
36
LLPS-Urm-3417
ENSUMAG00000015788.1
A0A384D809
HNRNPA1
37
LLPS-Urm-0309
ENSUMAG00000001699.1
A0A384BPW4
HNRNPA2B1
38
LLPS-Urm-2140
ENSUMAG00000004818.1
A0A384CHZ0
HNRNPK
39
LLPS-Urm-1279
ENSUMAG00000017368.1
A0A384C6I3
HSPH1
40
LLPS-Urm-1418
ENSUMAG00000020682.1
A0A384CKA8
ILF2
41
LLPS-Urm-0401
ENSUMAG00000025049.1
A0A384DHP3
ILF3
42
LLPS-Urm-1064
ENSUMAG00000021917.1
A0A384CKB7
IVNS1ABP
43
LLPS-Urm-1724
ENSUMAG00000017864.1
A0A384CAI1
KPNA2
44
LLPS-Urm-1250
ENSUMAG00000004427.1
A0A384BXR9
LOC103661140
45
LLPS-Urm-1347
ENSUMAG00000013183.1
A0A384C2Y4
LOC103663291
46
LLPS-Urm-1647
ENSUMAG00000015178.1
A0A384CL97
LOC103669042
47
LLPS-Urm-0455
ENSUMAG00000020215.1
A0A384CQ06
LOC103670265
48
LLPS-Urm-0035
ENSUMAG00000002093.1
A0A384DEC7
LOC103677720
49
LLPS-Urm-2583
ENSUMAG00000020983.1
A0A384CJC5
LUC7L
50
LLPS-Urm-2756
ENSUMAG00000021579.1
A0A384CUN3
NAGK
51
LLPS-Urm-3013
ENSUMAG00000021550.1
A0A384DTU4
NONO
52
LLPS-Urm-1022
ENSUMAG00000010579.1
A0A384CGD6
NSRP1
53
LLPS-Urm-3851
ENSUMAG00000014552.1
A0A384DFG3
NXF1
54
LLPS-Urm-1358
ENSUMAG00000018883.1
A0A384CMU8
OGG1
55
LLPS-Urm-3227
ENSUMAG00000012182.1
A0A384DEY0
P2RY12
56
LLPS-Urm-0244
ENSUMAG00000016341.1
A0A384BMA5
PLRG1
57
LLPS-Urm-1376
ENSUMAG00000013799.1
A0A384BSV8
PPIG
58
LLPS-Urm-2641
ENSUMAG00000011609.1
A0A384DFI5
PRPF19
59
LLPS-Urm-1660
ENSUMAG00000009385.1
A0A384CF64
PRPF8
60
LLPS-Urm-0817
ENSUMAG00000016786.1
A0A384CZZ7
PSMA3
61
LLPS-Urm-0988
ENSUMAG00000013993.1
A0A384C673
PSPC1
62
LLPS-Urm-3792
ENSUMAG00000016922.1
A0A384CRI6
RAPGEF1
63
LLPS-Urm-0219
ENSUMAG00000012237.1
A0A384D9A0
RBM17
64
LLPS-Urm-0910
ENSUMAG00000014075.1
A0A384DPP0
RBM23
65
LLPS-Urm-0585
ENSUMAG00000011836.1
A0A384CZI1
RBMX2
66
LLPS-Urm-2326
ENSUMAG00000020340.1
A0A384CJ79
RFWD2
67
LLPS-Urm-1222
ENSUMAG00000022133.1
A0A384CLI2
RNF151
68
LLPS-Urm-2488
ENSUMAG00000022327.1
A0A384CKG0
RNPS1
69
LLPS-Urm-1260
ENSUMAG00000016187.1
A0A384BJ35
SARNP
70
LLPS-Urm-0171
ENSUMAG00000016665.1
A0A384DPE7
SF3A1
71
LLPS-Urm-0004
ENSUMAG00000021250.1
A0A384CCQ2
SF3A3
72
LLPS-Urm-0214
ENSUMAG00000020945.1
A0A384BTN7
SF3B1
73
LLPS-Urm-0877
ENSUMAG00000003914.1
A0A384BWQ7
SNRNP35
74
LLPS-Urm-1661
ENSUMAG00000019791.1
A0A384BXG9
SNRPA
75
LLPS-Urm-0440
ENSUMAG00000024485.1
A0A384BT98
SNRPA1
76
LLPS-Urm-2687
ENSUMAG00000024879.1
A0A384DMJ9
SNRPB2
77
LLPS-Urm-1464
ENSUMAG00000020052.1
A0A384CZ09
SON
78
LLPS-Urm-1950
ENSUMAG00000015599.1
A0A384BUW1
SPOP
79
LLPS-Urm-0392
ENSUMAG00000000726.1
A0A384CJD2
SRRM2
80
LLPS-Urm-0203
ENSUMAG00000006618.1
A0A384C3G5
SRSF11
81
LLPS-Urm-3884
ENSUMAG00000009985.1
A0A384C9U4
SRSF3
82
LLPS-Urm-3037
ENSUMAG00000013534.1
A0A384CUF6
SRSF7
83
LLPS-Urm-2542
ENSUMAG00000006151.1
A0A384DFV3
SRSF9
84
LLPS-Urm-1504
ENSUMAG00000025038.1
A0A384CYE5
STAT3
85
LLPS-Urm-0949
ENSUMAG00000012946.1
A0A384BUD5
SUMO1
86
LLPS-Urm-2906
ENSUMAG00000012610.1
A0A384DGZ1
TGFBR1
87
LLPS-Urm-2120
ENSUMAG00000004912.1
A0A384D8R6
TRA2B
88
LLPS-Urm-0747
ENSUMAG00000007106.1
A0A384D9P1
TTC14
89
LLPS-Urm-0477
ENSUMAG00000024586.1
A0A384DLW3
U2AF2
90
LLPS-Urm-0052
ENSUMAG00000019859.1
A0A384CUG8
XPO1
91
LLPS-Urm-1393
ENSUMAG00000005588.1
A0A384BLC4
ZC3H11A
92
LLPS-Urm-3165
ENSUMAG00000011041.1
A0A384D0Z3
ZNF106
93
LLPS-Urm-2141
ENSUMAG00000007169.1
A0A384C8K8
ZNF131