Tuber melanosporum      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 36 genes.  Reviewed (0 or Unreviewed (36

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Tum-1057
GSTUM_00000089001
D5G4P3
GSTUM_00000089001
2
LLPS-Tum-0825
GSTUM_00000850001
D5GCX3
GSTUM_00000850001
3
LLPS-Tum-0915
GSTUM_00000917001
D5GD29
GSTUM_00000917001
4
LLPS-Tum-1347
GSTUM_00002160001
D5G6Q0
GSTUM_00002160001
5
LLPS-Tum-0374
GSTUM_00003353001
D5G9J5
GSTUM_00003353001
6
LLPS-Tum-0558
GSTUM_00003604001
D5GAI5
GSTUM_00003604001
7
LLPS-Tum-0877
GSTUM_00004017001
D5G4A1
GSTUM_00004017001
8
LLPS-Tum-0524
GSTUM_00004273001
D5G5C9
GSTUM_00004273001
9
LLPS-Tum-1422
GSTUM_00004484001
D5G6H4
GSTUM_00004484001
10
LLPS-Tum-1041
GSTUM_00005079001
D5G9U7
GSTUM_00005079001
11
LLPS-Tum-0652
GSTUM_00005149001
D5GA61
GSTUM_00005149001
12
LLPS-Tum-0410
GSTUM_00005162001
D5GA69
GSTUM_00005162001
13
LLPS-Tum-0951
GSTUM_00005703001
D5GBM1
GSTUM_00005703001
14
LLPS-Tum-1520
GSTUM_00005829001
D5GCD3
GSTUM_00005829001
15
LLPS-Tum-0963
GSTUM_00005871001
D5GCF9
GSTUM_00005871001
16
LLPS-Tum-0455
GSTUM_00007367001
D5GGF8
GSTUM_00007367001
17
LLPS-Tum-0210
GSTUM_00007642001
D5GH05
GSTUM_00007642001
18
LLPS-Tum-0041
GSTUM_00007996001
D5GHQ7
GSTUM_00007996001
19
LLPS-Tum-0327
GSTUM_00008008001
D5GHR7
GSTUM_00008008001
20
LLPS-Tum-0798
GSTUM_00008345001
D5GI91
GSTUM_00008345001
21
LLPS-Tum-0867
GSTUM_00008692001
D5GIU5
GSTUM_00008692001
22
LLPS-Tum-1420
GSTUM_00008710001
D5GIW1
GSTUM_00008710001
23
LLPS-Tum-0499
GSTUM_00008765001
D5GJ05
GSTUM_00008765001
24
LLPS-Tum-1044
GSTUM_00008876001
D5GJ80
GSTUM_00008876001
25
LLPS-Tum-0650
GSTUM_00009853001
D5GKZ8
GSTUM_00009853001
26
LLPS-Tum-0976
GSTUM_00010028001
D5GL67
GSTUM_00010028001
27
LLPS-Tum-0023
GSTUM_00010140001
D5GLD4
GSTUM_00010140001
28
LLPS-Tum-0761
GSTUM_00010258001
D5GLL4
GSTUM_00010258001
29
LLPS-Tum-0195
GSTUM_00010476001
D5GLY6
GSTUM_00010476001
30
LLPS-Tum-0639
GSTUM_00010629001
D5GMA9
GSTUM_00010629001
31
LLPS-Tum-0323
GSTUM_00010646001
D5GMC1
GSTUM_00010646001
32
LLPS-Tum-0228
GSTUM_00010659001
D5GMD4
GSTUM_00010659001
33
LLPS-Tum-0523
GSTUM_00010668001
D5GME1
GSTUM_00010668001
34
LLPS-Tum-0229
GSTUM_00011210001
D5GNB6
GSTUM_00011210001
35
LLPS-Tum-0609
GSTUM_00011278001
D5GNG2
GSTUM_00011278001
36
LLPS-Tum-1486
GSTUM_00011743001
D5GP78
GSTUM_00011743001