Triticum aestivum      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 59 genes.  Reviewed (0 or Unreviewed (59

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Tra-0024
TraesCS6D02G295600
A0A3B6QI70
2
LLPS-Tra-0035
TraesCS1B02G095200
A0A3B5YSP0
3
LLPS-Tra-0077
TraesCS7B02G187000
A0A3B6SKS6
4
LLPS-Tra-0101
TraesCS6B02G176700
A0A3B6PJB4
5
LLPS-Tra-0169
TraesCS7A02G128300
A0A3B6RDY8
6
LLPS-Tra-0282
TraesCS1D02G232100
A0A3B5ZV12
7
LLPS-Tra-0314
TraesCS4A02G115300
A0A3B6HR37
8
LLPS-Tra-0332
TraesCS7D02G053600
A0A3B6TCL4
9
LLPS-Tra-0349
TraesCS3D02G181100
A0A3B6GUU4
10
LLPS-Tra-0472
TraesCS4A02G329300
A0A3B6I0E4
11
LLPS-Tra-0532
TraesCS4A02G094800
A0A3B6HRV9
12
LLPS-Tra-0594
TraesCS6A02G024900
A0A3B6NJV3
13
LLPS-Tra-0601
TraesCS4A02G165000
A0A3B6HUP7
14
LLPS-Tra-0609
TraesCS7A02G129700
A0A3B6RE02
15
LLPS-Tra-0722
TraesCS7D02G529300
A0A3B6TZR6
16
LLPS-Tra-0742
TraesCS4B02G026400
A0A3B6IM57
17
LLPS-Tra-0744
TraesCS5A02G298000
A0A3B6KLL2
18
LLPS-Tra-0937
TraesCS1B02G203600
A0A3B5YWN1
19
LLPS-Tra-0951
TraesCS6D02G202800
W5GVP9
20
LLPS-Tra-1006
TraesCS1B02G165900
A0A3B5ZRY4
21
LLPS-Tra-1025
TraesCS4B02G156200
A0A3B6IS42
22
LLPS-Tra-1046
TraesCS2B02G266400
A0A3B6C531
23
LLPS-Tra-1061
TraesCS6D02G202100
A0A3B6QH49
24
LLPS-Tra-1114
TraesCS5D02G314000
A0A3B6MUX6
25
LLPS-Tra-1180
TraesCS7D02G491600
A0A3B6TLM9
26
LLPS-Tra-1191
TraesCS4A02G101400
A0A3B6HTL1
27
LLPS-Tra-1262
TraesCS3A02G503600
A0A3B6ESB1
28
LLPS-Tra-1265
TraesCS3A02G075400
A0A3B6EAM3
29
LLPS-Tra-1266
TraesCS3D02G214800
A0A341T1E5
30
LLPS-Tra-1275
TraesCS5B02G286900
W5G0E6
31
LLPS-Tra-1285
TraesCS5B02G502600
A0A3B6LWS0
32
LLPS-Tra-1286
TraesCS2B02G133300
A0A3B6C0S1
33
LLPS-Tra-1292
TraesCS3A02G181200
A0A3B6EEK3
34
LLPS-Tra-1440
TraesCS4D02G037700
A0A3B6JFL5
35
LLPS-Tra-1446
TraesCS7B02G083600
A0A3B6RBF4
36
LLPS-Tra-1489
TraesCS5D02G071000
A0A3B6MK10
37
LLPS-Tra-1549
TraesCS2B02G578700
A0A3B6CIE2
38
LLPS-Tra-1572
TraesCS4A02G088700
A0A3B6HRQ3
39
LLPS-Tra-1661
TraesCS1A02G176500
A0A3B5XYT7
40
LLPS-Tra-1697
TraesCS4D02G169300
A0A3B6JKF0
41
LLPS-Tra-1746
TraesCS3A02G200100
A0A3B6EHA2
42
LLPS-Tra-1915
TraesCS3A02G086900
A0A3B6ED36
43
LLPS-Tra-2165
TraesCS6D02G305800
A0A3B6QIS2
44
LLPS-Tra-2172
TraesCS6D02G104700
A0A3B6QB98
45
LLPS-Tra-2192
TraesCS2B02G450700
A0A3B6CBX8
46
LLPS-Tra-2249
TraesCS2A02G436800
A0A3B6B468
47
LLPS-Tra-2312
TraesCS1D02G245300
A0A1D6RD46
48
LLPS-Tra-2385
TraesCS1B02G244200
A0A3B5YY46
49
LLPS-Tra-2416
TraesCS4A02G317800
A0A3B6HXW9
50
LLPS-Tra-2442
TraesCS4D02G205900
A0A3B6JKA4
51
LLPS-Tra-2564
TraesCS6D02G391200
A0A3B6QLD4
52
LLPS-Tra-2747
TraesCS2D02G306900
A0A3B6DF78
53
LLPS-Tra-2774
TraesCS3A02G260000
A0A3B6EHE5
54
LLPS-Tra-2796
TraesCS2D02G244700
A0A3B6DBD9
55
LLPS-Tra-2805
TraesCS7A02G310200
A0A3B6RKA3
56
LLPS-Tra-3069
TraesCS1D02G105000
A0A3B5ZQE0
57
LLPS-Tra-0299
TraesCS2D02G169700
W5C520
CAMPLR22A2D_LOCUS1512
58
LLPS-Tra-1010
TraesCS2D02G281200
A0A1D5UPH0
CAMPLR22A2D_LOCUS2813
59
LLPS-Tra-0779
TraesCS3B02G299500
W5CWG7
TRAES_3BF055800020CFD_c1