Theobroma cacao      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 55 genes.  Reviewed (0 or Unreviewed (55

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Thc-1092
TCM_000407
A0A061DH94
TCM_000407
2
LLPS-Thc-0027
TCM_000427
A0A061DGE4
TCM_000427
3
LLPS-Thc-0687
TCM_000655
A0A061DH27
TCM_000655
4
LLPS-Thc-2368
TCM_001066
A0A061DHW1
TCM_001066
5
LLPS-Thc-0776
TCM_001305
A0A061DIL0
TCM_001305
6
LLPS-Thc-2253
TCM_001908
A0A061DLV3
TCM_001908
7
LLPS-Thc-1633
TCM_002102
A0A061DKR3
TCM_002102
8
LLPS-Thc-2262
TCM_002185
A0A061DKX1
TCM_002185
9
LLPS-Thc-0006
TCM_003324
A0A061DMS8
TCM_003324
10
LLPS-Thc-1649
TCM_004246
A0A061DQD6
TCM_004246
11
LLPS-Thc-1215
TCM_004650
A0A061DSJ9
TCM_004650
12
LLPS-Thc-0229
TCM_004673
A0A061DYM4
TCM_004673
13
LLPS-Thc-1679
TCM_004978
A0A061DZN7
TCM_004978
14
LLPS-Thc-1612
TCM_006547
A0A061DXP7
TCM_006547
15
LLPS-Thc-0376
TCM_006574
A0A061DY16
TCM_006574
16
LLPS-Thc-0414
TCM_007427
A0A061E1B9
TCM_007427
17
LLPS-Thc-1191
TCM_007486
A0A061E191
TCM_007486
18
LLPS-Thc-0083
TCM_011316
A0A061E8Y3
TCM_011316
19
LLPS-Thc-0037
TCM_012560
A0A061FWG3
TCM_012560
20
LLPS-Thc-1075
TCM_014895
A0A061G719
TCM_014895
21
LLPS-Thc-0693
TCM_015383
A0A061G8Z3
TCM_015383
22
LLPS-Thc-2024
TCM_016131
A0A061GBY6
TCM_016131
23
LLPS-Thc-0883
TCM_016186
A0A061G628
TCM_016186
24
LLPS-Thc-1604
TCM_016906
A0A061EDD8
TCM_016906
25
LLPS-Thc-0619
TCM_017602
A0A061EDQ9
TCM_017602
26
LLPS-Thc-0559
TCM_020986
A0A061EPA9
TCM_020986
27
LLPS-Thc-2126
TCM_021102
A0A061EPS8
TCM_021102
28
LLPS-Thc-2064
TCM_021208
A0A061ENT5
TCM_021208
29
LLPS-Thc-1556
TCM_021228
A0A061ENC6
TCM_021228
30
LLPS-Thc-1281
TCM_021239
A0A061EPG4
TCM_021239
31
LLPS-Thc-0496
TCM_021554
A0A061EQ81
TCM_021554
32
LLPS-Thc-2462
TCM_021972
A0A061ET42
TCM_021972
33
LLPS-Thc-1907
TCM_022010
A0A061ETA3
TCM_022010
34
LLPS-Thc-2134
TCM_022302
A0A061ET11
TCM_022302
35
LLPS-Thc-0311
TCM_025439
A0A061EZF8
TCM_025439
36
LLPS-Thc-0748
TCM_026195
A0A061F8T9
TCM_026195
37
LLPS-Thc-0811
TCM_026902
A0A061G6J2
TCM_026902
38
LLPS-Thc-1372
TCM_027148
A0A061G890
TCM_027148
39
LLPS-Thc-1168
TCM_027212
A0A061GFM4
TCM_027212
40
LLPS-Thc-0724
TCM_030022
A0A061GH28
TCM_030022
41
LLPS-Thc-1967
TCM_032429
A0A061FH52
TCM_032429
42
LLPS-Thc-1454
TCM_035166
A0A061FPA9
TCM_035166
43
LLPS-Thc-0295
TCM_036839
A0A061GIL2
TCM_036839
44
LLPS-Thc-1449
TCM_036891
A0A061GHI3
TCM_036891
45
LLPS-Thc-0744
TCM_036892
A0A061GHI7
TCM_036892
46
LLPS-Thc-0707
TCM_037013
A0A061GK01
TCM_037013
47
LLPS-Thc-1878
TCM_041032
A0A061GUC3
TCM_041032
48
LLPS-Thc-2330
TCM_041139
A0A061GTM1
TCM_041139
49
LLPS-Thc-0870
TCM_041289
A0A061GV10
TCM_041289
50
LLPS-Thc-1273
TCM_041636
A0A061GV88
TCM_041636
51
LLPS-Thc-0025
TCM_041778
A0A061GWT7
TCM_041778
52
LLPS-Thc-2091
TCM_042243
A0A061H0E4
TCM_042243
53
LLPS-Thc-1603
TCM_042751
A0A061FLD3
TCM_042751
54
LLPS-Thc-1251
TCM_044534
A0A061FX87
TCM_044534
55
LLPS-Thc-0865
TCM_045030
A0A061FY62
TCM_045030