Scleropages formosus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 104 genes.  Reviewed (0 or Unreviewed (104

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Scf-0798
ENSSFOG00015016399.1
2
LLPS-Scf-0849
ENSSFOG00015016107.1
3
LLPS-Scf-0891
ENSSFOG00015008603.1
4
LLPS-Scf-1651
ENSSFOG00015006368.1
5
LLPS-Scf-1768
ENSSFOG00015014729.1
6
LLPS-Scf-1774
ENSSFOG00015007348.1
7
LLPS-Scf-3095
ENSSFOG00015023258.1
A0A0P7Z913
akap17a
8
LLPS-Scf-1055
ENSSFOG00015021167.1
A0A0P7XLM0
anxa2
9
LLPS-Scf-2764
ENSSFOG00015007708.1
A0A0P7WQL2
bcas2
10
LLPS-Scf-0321
ENSSFOG00015011064.1
A0A0P7VHL6
cdk1
11
LLPS-Scf-1826
ENSSFOG00015019689.1
A0A0P7U5Z8
dnajb1
12
LLPS-Scf-1602
ENSSFOG00015016491.1
A0A0P7V4W1
dnajc12
13
LLPS-Scf-1898
ENSSFOG00015005119.1
A0A0P7VLQ4
kpna2
14
LLPS-Scf-2117
ENSSFOG00015016485.1
A0A0P7WWA6
LOC108922723
15
LLPS-Scf-0556
ENSSFOG00015011598.1
A0A0P7UG93
LOC108927150
16
LLPS-Scf-0102
ENSSFOG00015014718.1
A0A0P7XA38
LOC108930093
17
LLPS-Scf-2836
ENSSFOG00015013770.1
A0A0P7UMM7
magoh
18
LLPS-Scf-0665
ENSSFOG00015006256.1
A0A0P7VBM0
snrpa
19
LLPS-Scf-1115
ENSSFOG00015012543.1
A0A0P7XRR8
Z043_100785
20
LLPS-Scf-1196
ENSSFOG00015022213.1
A0A0P7VAD6
Z043_101214
21
LLPS-Scf-3370
ENSSFOG00015020093.1
A0A0P7VA41
Z043_101346
22
LLPS-Scf-1674
ENSSFOG00015003886.1
A0A0P7VW42
Z043_102155
23
LLPS-Scf-2489
ENSSFOG00015014527.1
A0A0P7V7V8
Z043_102232
24
LLPS-Scf-0127
ENSSFOG00015003975.1
A0A0P7XS60
Z043_102319
25
LLPS-Scf-2758
ENSSFOG00015015886.1
A0A0P7VV90
Z043_102491
26
LLPS-Scf-2333
ENSSFOG00015019410.1
A0A0P7XQU6
Z043_102766
27
LLPS-Scf-3660
ENSSFOG00015007506.1
A0A0P7UTF5
Z043_102840
28
LLPS-Scf-2346
ENSSFOG00015008195.1
A0A0N8K2F2
Z043_103000
29
LLPS-Scf-4178
ENSSFOG00015001796.1
A0A0P7V692
Z043_103220
30
LLPS-Scf-0629
ENSSFOG00015009440.1
A0A0P7XNP3
Z043_103672
31
LLPS-Scf-2104
ENSSFOG00015009797.1
A0A0P7XME9
Z043_104223
32
LLPS-Scf-3902
ENSSFOG00015004910.1
A0A0P7XMD5
Z043_104226
33
LLPS-Scf-1180
ENSSFOG00015019201.1
A0A0P7V0P2
Z043_104542
34
LLPS-Scf-1783
ENSSFOG00015005988.1
A0A0P7VQY7
Z043_104748
35
LLPS-Scf-0571
ENSSFOG00015013905.1
A0A0P7VQV2
Z043_104796
36
LLPS-Scf-0301
ENSSFOG00015023730.1
A0A0P7UZL8
Z043_105078
37
LLPS-Scf-3045
ENSSFOG00015021535.1
A0A0P7V360
Z043_105307
38
LLPS-Scf-1621
ENSSFOG00015015844.1
A0A0P7XF59
Z043_105955
39
LLPS-Scf-1578
ENSSFOG00015014887.1
A0A0P7UTM4
Z043_107736
40
LLPS-Scf-1620
ENSSFOG00015008964.1
A0A0P7X8R1
Z043_107932
41
LLPS-Scf-1067
ENSSFOG00015018826.1
A0A0P7VGR1
Z043_108342
42
LLPS-Scf-2157
ENSSFOG00015007936.1
A0A0P7X5M9
Z043_108864
43
LLPS-Scf-1781
ENSSFOG00015016024.1
A0A0P7YVE7
Z043_109084
44
LLPS-Scf-1006
ENSSFOG00015003678.1
A0A0P7VEC5
Z043_109355
45
LLPS-Scf-1551
ENSSFOG00015005692.1
A0A0P7XAA8
Z043_109425
46
LLPS-Scf-1295
ENSSFOG00015006520.1
A0A0P7UQ91
Z043_109809
47
LLPS-Scf-1475
ENSSFOG00015016775.1
A0A0P7V8A0
Z043_109944
48
LLPS-Scf-3387
ENSSFOG00015010470.1
A0A0P7UPP3
Z043_110054
49
LLPS-Scf-1124
ENSSFOG00015003298.1
A0A0P7VBW6
Z043_110495
50
LLPS-Scf-1135
ENSSFOG00015007738.1
A0A0N8JZW3
Z043_110713
51
LLPS-Scf-1521
ENSSFOG00015015913.1
A0A0N8JZT0
Z043_110994
52
LLPS-Scf-1200
ENSSFOG00015005975.1
A0A0P7YQX2
Z043_111001
53
LLPS-Scf-3149
ENSSFOG00015010137.1
A0A0P7UJD7
Z043_111096
54
LLPS-Scf-2862
ENSSFOG00015001481.1
A0A0P7YP85
Z043_111518
55
LLPS-Scf-3452
ENSSFOG00015020932.1
A0A0P7UIJ0
Z043_111532
56
LLPS-Scf-0362
ENSSFOG00015021978.1
A0A0N8JZK3
Z043_111658
57
LLPS-Scf-0593
ENSSFOG00015016914.1
A0A0P7WZ10
Z043_111785
58
LLPS-Scf-1841
ENSSFOG00015019194.1
A0A0N8JZI7
Z043_111796
59
LLPS-Scf-2220
ENSSFOG00015009793.1
A0A0P7WYH8
Z043_111983
60
LLPS-Scf-0246
ENSSFOG00015008745.1
A0A0P7UKZ0
Z043_112188
61
LLPS-Scf-1136
ENSSFOG00015002536.1
A0A0P7V340
Z043_112208
62
LLPS-Scf-4171
ENSSFOG00015008513.1
A0A0P7U2P5
Z043_112886
63
LLPS-Scf-3975
ENSSFOG00015000447.1
A0A0P7U2N9
Z043_112892
64
LLPS-Scf-1038
ENSSFOG00015001395.1
A0A0N8JZ40
Z043_113058
65
LLPS-Scf-1319
ENSSFOG00015012817.1
A0A0P7YK71
Z043_113393
66
LLPS-Scf-3166
ENSSFOG00015020709.1
A0A0P7UZX5
Z043_113934
67
LLPS-Scf-2605
ENSSFOG00015014835.1
A0A0P7UZQ4
Z043_114057
68
LLPS-Scf-0617
ENSSFOG00015002502.1
A0A0P7WY44
Z043_114718
69
LLPS-Scf-1303
ENSSFOG00015000856.1
A0A0P7UFC0
Z043_114775
70
LLPS-Scf-4136
ENSSFOG00015008720.1
A0A0P7WX10
Z043_115280
71
LLPS-Scf-1087
ENSSFOG00015003278.1
A0A0P7V1X4
Z043_115291
72
LLPS-Scf-0008
ENSSFOG00015020165.1
A0A0P7WWI4
Z043_115467
73
LLPS-Scf-4093
ENSSFOG00015010235.1
A0A0P7YFU3
Z043_116015
74
LLPS-Scf-0799
ENSSFOG00015013206.1
A0A0P7YFP3
Z043_116106
75
LLPS-Scf-0059
ENSSFOG00015014743.1
A0A0P7WTD8
Z043_116485
76
LLPS-Scf-1811
ENSSFOG00015009892.1
A0A0P7USV0
Z043_116540
77
LLPS-Scf-0242
ENSSFOG00015019840.1
A0A0P7TUC3
Z043_116696
78
LLPS-Scf-0434
ENSSFOG00015004800.1
A0A0P7USC6
Z043_116734
79
LLPS-Scf-0763
ENSSFOG00015017499.1
A0A0P7UX77
Z043_116920
80
LLPS-Scf-1157
ENSSFOG00015011911.1
A0A0P7UQY7
Z043_117322
81
LLPS-Scf-3132
ENSSFOG00015020292.1
A0A0N8JXL6
Z043_117619
82
LLPS-Scf-1675
ENSSFOG00015003884.1
A0A0P7TRD3
Z043_117955
83
LLPS-Scf-3743
ENSSFOG00015020210.1
A0A0P7UNX5
Z043_118156
84
LLPS-Scf-2390
ENSSFOG00015015840.1
A0A0N8JXA3
Z043_118585
85
LLPS-Scf-0134
ENSSFOG00015024011.1
A0A0N8JX87
Z043_118718
86
LLPS-Scf-0524
ENSSFOG00015002645.1
A0A0P7TZ26
Z043_118743
87
LLPS-Scf-1084
ENSSFOG00015021355.1
A0A0P7TNT5
Z043_118862
88
LLPS-Scf-0137
ENSSFOG00015012325.1
A0A0P7Y9S0
Z043_119132
89
LLPS-Scf-3773
ENSSFOG00015020577.1
A0A0P7TMG2
Z043_119584
90
LLPS-Scf-0156
ENSSFOG00015021709.1
A0A0P7WEL6
Z043_120191
91
LLPS-Scf-2316
ENSSFOG00015016148.1
A0A0P7WEG8
Z043_120250
92
LLPS-Scf-3437
ENSSFOG00015000137.1
A0A0P7UJM6
Z043_120362
93
LLPS-Scf-1505
ENSSFOG00015001732.1
A0A0P7TKB4
Z043_120576
94
LLPS-Scf-1612
ENSSFOG00015019394.1
A0A0P7Y5Z6
Z043_120840
95
LLPS-Scf-0247
ENSSFOG00015001236.1
A0A0P7TIT3
Z043_121150
96
LLPS-Scf-3434
ENSSFOG00015012261.1
A0A0P7ULI3
Z043_121655
97
LLPS-Scf-0028
ENSSFOG00015003189.1
A0A0P7W9H5
Z043_122465
98
LLPS-Scf-1738
ENSSFOG00015010201.1
A0A0P7Y0P8
Z043_122889
99
LLPS-Scf-3768
ENSSFOG00015003785.1
A0A0N8JVL7
Z043_123679
100
LLPS-Scf-0563
ENSSFOG00015006676.1
A0A0P7XZ71
Z043_123710
101
LLPS-Scf-0615
ENSSFOG00015022746.1
A0A0P7W690
Z043_124013
102
LLPS-Scf-2454
ENSSFOG00015016369.1
A0A0N8JVB3
Z043_124597
103
LLPS-Scf-3741
ENSSFOG00015023532.1
A0A0P7UE78
Z043_125063
104
LLPS-Scf-3220
ENSSFOG00015006767.1
A0A0P7USW9
znf131