Populus trichocarpa      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 63 genes.  Reviewed (0 or Unreviewed (63

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Pot-0328
POPTR_003G021900v3
2
LLPS-Pot-0633
POPTR_T134200v3
3
LLPS-Pot-0715
POPTR_006G215200v3
4
LLPS-Pot-1012
POPTR_T145100v3
5
LLPS-Pot-1325
POPTR_003G158800v3
6
LLPS-Pot-2164
POPTR_013G015500v3
7
LLPS-Pot-2432
POPTR_009G044900v3
8
LLPS-Pot-1820
POPTR_001G109400v3
B9GKM9
POPTR_001G109400
9
LLPS-Pot-0640
POPTR_001G126400v3
U5GU85
POPTR_001G126400
10
LLPS-Pot-2194
POPTR_001G224100v3
A9PHR5
POPTR_001G224100
11
LLPS-Pot-0315
POPTR_001G244600v3
B9GJ86
POPTR_001G244600
12
LLPS-Pot-0996
POPTR_002G003400v3
B9GPM6
POPTR_002G003400
13
LLPS-Pot-1621
POPTR_002G003600v3
A0A2K2BBA4
POPTR_002G003600
14
LLPS-Pot-0477
POPTR_002G112200v3
B9GNA5
POPTR_002G112200
15
LLPS-Pot-0248
POPTR_003G031900v3
B9MWN9
POPTR_003G031900
16
LLPS-Pot-0201
POPTR_004G076600v3
U5GI70
POPTR_004G076600
17
LLPS-Pot-1863
POPTR_004G179000v3
B9H1M0
POPTR_004G179000
18
LLPS-Pot-0286
POPTR_005G094600v3
B9H605
POPTR_005G094600
19
LLPS-Pot-1676
POPTR_005G105700v3
U5GH90
POPTR_005G105700
20
LLPS-Pot-2151
POPTR_005G124300v3
U5GC46
POPTR_005G124300
21
LLPS-Pot-2557
POPTR_005G140200v3
A0A2K2AGJ8
POPTR_005G140200
22
LLPS-Pot-1989
POPTR_005G165400v3
B9H737
POPTR_005G165400
23
LLPS-Pot-1015
POPTR_005G180700v3
B9H7H7
POPTR_005G180700
24
LLPS-Pot-2583
POPTR_005G210900v3
B9H897
POPTR_005G210900
25
LLPS-Pot-0787
POPTR_005G215800v3
B9H8E5
POPTR_005G215800
26
LLPS-Pot-2225
POPTR_006G023500v3
A0A2K1ZVL8
POPTR_006G023500
27
LLPS-Pot-0479
POPTR_006G121300v3
U5GA38
POPTR_006G121300
28
LLPS-Pot-1386
POPTR_006G233000v3
A0A2K2A715
POPTR_006G233000
29
LLPS-Pot-0334
POPTR_006G253100v3
B9HA46
POPTR_006G253100
30
LLPS-Pot-0567
POPTR_006G265700v3
A0A2K2A8S4
POPTR_006G265700
31
LLPS-Pot-0240
POPTR_007G026900v3
B9HEV8
POPTR_007G026900
32
LLPS-Pot-1161
POPTR_007G095800v3
B9HFE4
POPTR_007G095800
33
LLPS-Pot-0758
POPTR_008G033000v3
B9HL79
POPTR_008G033000
34
LLPS-Pot-1708
POPTR_008G171600v3
B9HKU6
POPTR_008G171600
35
LLPS-Pot-1074
POPTR_009G138100v3
B9HR28
POPTR_009G138100
36
LLPS-Pot-2045
POPTR_009G162500v3
A0A2K1Z8T3
POPTR_009G162500
37
LLPS-Pot-1868
POPTR_010G011800v3
A0A2K1YM54
POPTR_010G011800
38
LLPS-Pot-0418
POPTR_010G012800v3
A9PH78
POPTR_010G012800
39
LLPS-Pot-1391
POPTR_010G014600v3
A0A2K1YMA8
POPTR_010G014600
40
LLPS-Pot-1133
POPTR_010G026100v3
A0A2K1YMT1
POPTR_010G026100
41
LLPS-Pot-2763
POPTR_010G049100v3
B9HTQ9
POPTR_010G049100
42
LLPS-Pot-1374
POPTR_010G203200v3
B9HTI2
POPTR_010G203200
43
LLPS-Pot-2340
POPTR_011G050400v3
A0A2K1YFQ9
POPTR_011G050400
44
LLPS-Pot-0838
POPTR_011G098100v3
B9I1E7
POPTR_011G098100
45
LLPS-Pot-0124
POPTR_012G012800v3
A0A2K1Y755
POPTR_012G012800
46
LLPS-Pot-0253
POPTR_012G050300v3
B9I2H7
POPTR_012G050300
47
LLPS-Pot-1425
POPTR_012G097300v3
A0A2K1YBH4
POPTR_012G097300
48
LLPS-Pot-0177
POPTR_013G046300v3
B9I5N3
POPTR_013G046300
49
LLPS-Pot-0969
POPTR_013G088600v3
A0A2K1Y3A3
POPTR_013G088600
50
LLPS-Pot-1529
POPTR_014G110200v3
B9I987
POPTR_014G110200
51
LLPS-Pot-0128
POPTR_014G115600v3
A0A2K1XU45
POPTR_014G115600
52
LLPS-Pot-1709
POPTR_014G127800v3
A9PEB3
POPTR_014G127800
53
LLPS-Pot-1853
POPTR_014G143500v3
B9IA59
POPTR_014G143500
54
LLPS-Pot-0626
POPTR_014G159300v3
B9IAK9
POPTR_014G159300
55
LLPS-Pot-0991
POPTR_015G041800v3
B9IE93
POPTR_015G041800
56
LLPS-Pot-0556
POPTR_016G062500v3
U5FQJ2
POPTR_016G062500
57
LLPS-Pot-2093
POPTR_017G033400v3
A0A2K1X2M4
POPTR_017G033400
58
LLPS-Pot-1387
POPTR_017G050800v3
B9IJD5
POPTR_017G050800
59
LLPS-Pot-0562
POPTR_018G017300v3
A9PI27
POPTR_018G017300
60
LLPS-Pot-1900
POPTR_019G039500v3
U5FGI6
POPTR_019G039500
61
LLPS-Pot-0501
POPTR_019G121400v3
A0A2K1WT20
POPTR_019G121400
62
LLPS-Pot-1816
POPTR_T058900v3
U5FKQ8
POPTR_T058900
63
LLPS-Pot-1911
POPTR_002G205000v3
U5GQA8
POPTR_T134200