Physcomitrella patens      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 57 genes.  Reviewed (0 or Unreviewed (57

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Php-1640
Pp3c1_7870
A0A2K1L7B5
PHYPA_000353
2
LLPS-Php-2046
Pp3c1_19220
A9S2G1
PHYPA_000836
3
LLPS-Php-0297
Pp3c1_31280
A0A2K1LAF6
PHYPA_001431
4
LLPS-Php-0185
Pp3c1_35700
A0A2K1LB36
PHYPA_001652
5
LLPS-Php-1242
Pp3c1_35880
A9RTW1
PHYPA_001660
6
LLPS-Php-2515
Pp3c2_4060
A0A2K1L046
PHYPA_002182
7
LLPS-Php-0396
Pp3c2_18610
A0A2K1L246
PHYPA_002895
8
LLPS-Php-1739
Pp3c2_21080
A0A2K1L2I1
PHYPA_003014
9
LLPS-Php-2403
Pp3c2_24290
A0A2K1L2V2
PHYPA_003147
10
LLPS-Php-0864
Pp3c3_10000
A0A2K1KTW1
PHYPA_004204
11
LLPS-Php-0783
Pp3c3_17580
A9U5D1
PHYPA_004575
12
LLPS-Php-0944
Pp3c3_20180
A0A2K1KVD6
PHYPA_004700
13
LLPS-Php-1278
Pp3c3_30240
A0A2K1KWI4
PHYPA_005152
14
LLPS-Php-2512
Pp3c5_1590
A9SF12
PHYPA_007093
15
LLPS-Php-1116
Pp3c5_9900
A9SC45
PHYPA_007463
16
LLPS-Php-1513
Pp3c5_15520
A0A2K1KJU0
PHYPA_007723
17
LLPS-Php-1057
Pp3c5_21100
A9TF74
PHYPA_007974
18
LLPS-Php-0106
Pp3c6_3460
A0A2K1KE63
PHYPA_008445
19
LLPS-Php-0581
Pp3c6_15830
A0A2K1KFR8
PHYPA_008998
20
LLPS-Php-2225
Pp3c6_17910
A9RK59
PHYPA_009114
21
LLPS-Php-2196
Pp3c6_27160
A0A2K1KHC8
PHYPA_009553
22
LLPS-Php-0408
Pp3c7_5890
A0A2K1KAL0
PHYPA_009996
23
LLPS-Php-1763
Pp3c7_6390
A0A2K1KAM2
PHYPA_010020
24
LLPS-Php-0635
Pp3c7_10880
A0A2K1KBA5
PHYPA_010240
25
LLPS-Php-0044
Pp3c7_10890
A0A2K1KBA2
PHYPA_010241
26
LLPS-Php-2425
Pp3c8_3970
A9RYA7
PHYPA_011138
27
LLPS-Php-1398
Pp3c8_9650
A0A2K1K6P3
PHYPA_011340
28
LLPS-Php-1319
Pp3c8_21390
A0A2K1K894
PHYPA_011887
29
LLPS-Php-0530
Pp3c8_25090
A0A2K1K8N6
PHYPA_012041
30
LLPS-Php-1741
Pp3c9_4390
A9TBJ3
PHYPA_012275
31
LLPS-Php-2186
Pp3c9_6940
A9TFK2
PHYPA_012399
32
LLPS-Php-1588
Pp3c9_17380
A9SH09
PHYPA_012814
33
LLPS-Php-1836
Pp3c9_17960
A0A2K1K3L7
PHYPA_012846
34
LLPS-Php-0265
Pp3c10_5440
A9S636
PHYPA_013465
35
LLPS-Php-1504
Pp3c10_9710
A0A2K1JYF7
PHYPA_013664
36
LLPS-Php-1779
Pp3c10_11700
A0A2K1JYN0
PHYPA_013758
37
LLPS-Php-1475
Pp3c11_14450
A9RIM7
PHYPA_015021
38
LLPS-Php-1370
Pp3c11_26750
A0A2K1JWI1
PHYPA_015635
39
LLPS-Php-0497
Pp3c12_15180
A9SEC3
PHYPA_016322
40
LLPS-Php-2130
Pp3c13_17960
A0A2K1JMD5
PHYPA_017528
41
LLPS-Php-0032
Pp3c14_12690
A0A2K1JHJ8
PHYPA_018435
42
LLPS-Php-1709
Pp3c15_7530
A0A2K1JCC4
PHYPA_019460
43
LLPS-Php-0451
Pp3c15_8160
A0A2K1JCI0
PHYPA_019496
44
LLPS-Php-0150
Pp3c15_19100
A9TCW8
PHYPA_019926
45
LLPS-Php-1347
Pp3c16_21370
A0A2K1J9J0
PHYPA_021305
46
LLPS-Php-2475
Pp3c17_930
A9T0Y5
PHYPA_021510
47
LLPS-Php-2156
Pp3c17_6390
A0A2K1J2X4
PHYPA_021723
48
LLPS-Php-2091
Pp3c19_15660
A0A2K1IYK7
PHYPA_024171
49
LLPS-Php-1577
Pp3c19_20770
A0A2K1IZ66
PHYPA_024387
50
LLPS-Php-0237
Pp3c21_4170
A0A2K1IQM4
PHYPA_025702
51
LLPS-Php-2527
Pp3c22_11600
A9U1N1
PHYPA_027019
52
LLPS-Php-0741
Pp3c23_11510
A0A2K1IIY1
PHYPA_027933
53
LLPS-Php-0311
Pp3c23_13180
A0A2K1IJ61
PHYPA_028012
54
LLPS-Php-0368
Pp3c23_15260
A0A2K1IJG3
PHYPA_028110
55
LLPS-Php-2544
Pp3c25_5610
A0A2K1IDY1
PHYPA_029629
56
LLPS-Php-1654
Pp3c26_3360
A0A2K1IBQ2
PHYPA_030177
57
LLPS-Php-0896
Pp3c22_22940
C0STZ0
PpCLF