Pan paniscus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 114 genes.  Reviewed (0 or Unreviewed (114

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Pap-0047
ENSPPAG00000041394.1
A0A2R9CGH0
2
LLPS-Pap-0380
ENSPPAG00000036161.1
A0A2R9BAG6
3
LLPS-Pap-0426
ENSPPAG00000043403.1
A0A2R9CKQ6
4
LLPS-Pap-1074
ENSPPAG00000035874.1
A0A2R9B7B6
5
LLPS-Pap-1099
ENSPPAG00000039520.1
A0A2R9BUH9
6
LLPS-Pap-1457
ENSPPAG00000036403.1
A0A2R9BC00
7
LLPS-Pap-2130
ENSPPAG00000029341.1
A0A2R9AA36
8
LLPS-Pap-3110
ENSPPAG00000002799.1
A0A2R8ZFQ3
9
LLPS-Pap-3282
ENSPPAG00000027945.1
A0A2R8ZWT0
10
LLPS-Pap-3468
ENSPPAG00000043240.1
A0A2R9CH57
11
LLPS-Pap-3485
ENSPPAG00000026285.1
A0A2R8ZTJ2
12
LLPS-Pap-4398
ENSPPAG00000032188.1
A0A2R9ATA4
13
LLPS-Pap-2421
ENSPPAG00000037787.1
A0A2R9BJA3
AGO2
14
LLPS-Pap-1858
ENSPPAG00000030569.1
A0A2R9AGY4
AKAP17A
15
LLPS-Pap-0827
ENSPPAG00000031022.1
A0A2R9AFR9
ANXA10
16
LLPS-Pap-3064
ENSPPAG00000043943.1
A0A2R9CNI1
ANXA2
17
LLPS-Pap-0906
ENSPPAG00000028900.1
A0A2R9A6S3
ARL6IP4
18
LLPS-Pap-3860
ENSPPAG00000042807.1
A0A2R9CEN3
ATR
19
LLPS-Pap-2549
ENSPPAG00000030780.1
A0A2R9AI83
BCAS2
20
LLPS-Pap-1260
ENSPPAG00000032236.1
A0A2R9ATK9
C9orf78
21
LLPS-Pap-4027
ENSPPAG00000030586.1
A0A2R9AH22
CARM1
22
LLPS-Pap-0002
ENSPPAG00000035069.1
A0A2R9B9B7
CASC3
23
LLPS-Pap-4019
ENSPPAG00000033713.1
A0A2R9AUL4
CCNL1
24
LLPS-Pap-0115
ENSPPAG00000031456.1
A0A2R9APB0
CDC5L
25
LLPS-Pap-0707
ENSPPAG00000040220.1
A0A2R9C1X9
CDK1
26
LLPS-Pap-2605
ENSPPAG00000028259.1
A0A2R8ZZV4
CDK7
27
LLPS-Pap-1930
ENSPPAG00000035554.1
A0A2R9B5G9
CDK9
28
LLPS-Pap-0353
ENSPPAG00000027668.1
A0A2R8ZVB9
CDKL5
29
LLPS-Pap-0963
ENSPPAG00000043646.1
A0A2R9CJL9
CLK2
30
LLPS-Pap-3943
ENSPPAG00000030430.1
A0A2R9ACT7
COP1
31
LLPS-Pap-1695
ENSPPAG00000041093.1
A0A2R9CFB2
CSNK1A1
32
LLPS-Pap-0931
ENSPPAG00000016009.1
A0A2R8ZJ33
CTNNBL1
33
LLPS-Pap-1115
ENSPPAG00000043072.1
A0A2R9CQC1
DDX39B
34
LLPS-Pap-0183
ENSPPAG00000037804.1
A0A2R9BJS9
DDX46
35
LLPS-Pap-2467
ENSPPAG00000039507.1
A0A2R9BXT5
DGCR8
36
LLPS-Pap-1789
ENSPPAG00000030563.1
A0A2R9AGY0
DNAJB1
37
LLPS-Pap-2320
ENSPPAG00000041971.1
A0A2R9C9K8
DNAJC17
38
LLPS-Pap-4155
ENSPPAG00000036822.1
A0A2R9BLG6
DYRK3
39
LLPS-Pap-0666
ENSPPAG00000001225.1
A0A2R8Z6N6
EGF
40
LLPS-Pap-0341
ENSPPAG00000039368.1
A0A2R9BTM8
ERH
41
LLPS-Pap-0715
ENSPPAG00000033075.1
A0A2R9AQT7
FAM76B
42
LLPS-Pap-3391
ENSPPAG00000042173.1
A0A2R9CD38
FAM83H
43
LLPS-Pap-1844
ENSPPAG00000027411.1
A0A2R8ZTS5
FANCD2
44
LLPS-Pap-1732
ENSPPAG00000023949.1
A0A2R8ZM28
FANCI
45
LLPS-Pap-4443
ENSPPAG00000027621.1
A0A2R9A0K1
FBXL18
46
LLPS-Pap-1832
ENSPPAG00000031305.1
A0A2R9AGY9
FGFR1
47
LLPS-Pap-0063
ENSPPAG00000029090.1
A0A2R9A818
FUS
48
LLPS-Pap-3082
ENSPPAG00000027558.1
A0A2R8ZUI7
FYTTD1
49
LLPS-Pap-0683
ENSPPAG00000043020.1
A0A2R9CIB7
GLI3
50
LLPS-Pap-0590
ENSPPAG00000040976.1
A0A2R9CDM4
GSK3B
51
LLPS-Pap-3700
ENSPPAG00000028617.1
A0A2R9A232
HIF1A
52
LLPS-Pap-4590
ENSPPAG00000042427.1
A0A2R9CMU0
HIF3A
53
LLPS-Pap-2156
ENSPPAG00000018027.1
A0A2R8ZHP5
HNRNPA1
54
LLPS-Pap-0299
ENSPPAG00000037520.1
A0A2R9BIQ7
HNRNPA2B1
55
LLPS-Pap-2220
ENSPPAG00000043778.1
A0A2R9CMZ8
HNRNPK
56
LLPS-Pap-3330
ENSPPAG00000012606.1
A0A2R8ZH03
HSPH1
57
LLPS-Pap-0291
ENSPPAG00000002027.1
A0A2R8Z6U5
ILF2
58
LLPS-Pap-1264
ENSPPAG00000040547.1
A0A2R9C1L7
ILF3
59
LLPS-Pap-2667
ENSPPAG00000033318.1
A0A2R9ASQ6
IVNS1ABP
60
LLPS-Pap-1061
ENSPPAG00000044030.1
A0A2R9CLZ4
KPNA2
61
LLPS-Pap-3578
ENSPPAG00000041773.1
A0A2R9C854
LUC7L
62
LLPS-Pap-2986
ENSPPAG00000038041.1
A0A2R9BU47
NAGK
63
LLPS-Pap-2239
ENSPPAG00000030627.1
A0A2R9AHB2
NKAP
64
LLPS-Pap-0241
ENSPPAG00000033342.1
A0A2R9AWT0
NOSIP
65
LLPS-Pap-3538
ENSPPAG00000033832.1
A0A2R9B1E3
NR5A1
66
LLPS-Pap-2501
ENSPPAG00000003543.1
A0A2R8ZDY8
NSRP1
67
LLPS-Pap-0745
ENSPPAG00000032571.1
A0A2R9AV63
NUAK2
68
LLPS-Pap-4110
ENSPPAG00000041498.1
A0A2R9C974
NXF1
69
LLPS-Pap-1587
ENSPPAG00000036116.1
A0A2R9B8S3
PCBP1
70
LLPS-Pap-0018
ENSPPAG00000030351.1
A0A2R9AGK3
PLRG1
71
LLPS-Pap-3214
ENSPPAG00000027351.1
A0A2R8ZZ35
PNN
72
LLPS-Pap-2652
ENSPPAG00000042796.1
A0A2R9CPE5
PPIG
73
LLPS-Pap-0502
ENSPPAG00000030246.1
A0A2R9ABK4
PRPF19
74
LLPS-Pap-1619
ENSPPAG00000042753.1
A0A2R9CE78
PRPF8
75
LLPS-Pap-3978
ENSPPAG00000035468.1
A0A2R9B530
PSMA3
76
LLPS-Pap-0784
ENSPPAG00000009836.1
A0A2R8ZB56
PSPC1
77
LLPS-Pap-4087
ENSPPAG00000040344.1
A0A2R9C099
RAPGEF1
78
LLPS-Pap-0882
ENSPPAG00000032347.1
A0A2R9AMY6
RBM17
79
LLPS-Pap-0357
ENSPPAG00000037922.1
A0A2R9BJN3
RBM23
80
LLPS-Pap-1190
ENSPPAG00000042194.1
A0A2R9CAK0
RBMX2
81
LLPS-Pap-2016
ENSPPAG00000035993.1
A0A2R9B804
RNF151
82
LLPS-Pap-1762
ENSPPAG00000011845.1
A0A2R8ZGD3
RNPS1
83
LLPS-Pap-3120
ENSPPAG00000039513.1
A0A2R9BV18
SARNP
84
LLPS-Pap-0240
ENSPPAG00000041790.1
A0A2R9CB73
SF3A1
85
LLPS-Pap-3139
ENSPPAG00000034066.1
A0A2R9AX82
SF3A3
86
LLPS-Pap-3312
ENSPPAG00000035007.1
A0A2R9B2K6
SF3B1
87
LLPS-Pap-2899
ENSPPAG00000033769.1
A0A2R9AV36
SMAD3
88
LLPS-Pap-2470
ENSPPAG00000041559.1
A0A2R9C7E7
SNRNP200
89
LLPS-Pap-4127
ENSPPAG00000000480.1
A0A2R8Z5X3
SNRNP35
90
LLPS-Pap-1403
ENSPPAG00000035067.1
A0A2R9B2Q8
SNRNP70
91
LLPS-Pap-3583
ENSPPAG00000033257.1
A0A2R9AYG8
SNRPA
92
LLPS-Pap-0094
ENSPPAG00000032059.1
A0A2R9ASR3
SNRPA1
93
LLPS-Pap-1931
ENSPPAG00000028034.1
A0A2R8ZX96
SNRPB2
94
LLPS-Pap-0180
ENSPPAG00000025621.1
A0A2R8ZSB6
SPOP
95
LLPS-Pap-1305
ENSPPAG00000032551.1
A0A2R9AV67
SRRM2
96
LLPS-Pap-1006
ENSPPAG00000032557.1
A0A2R9ANB2
SRSF10
97
LLPS-Pap-3906
ENSPPAG00000036149.1
A0A2R9BCP2
SRSF11
98
LLPS-Pap-2026
ENSPPAG00000031433.1
A0A2R9ALQ4
SRSF2
99
LLPS-Pap-3289
ENSPPAG00000037453.1
A0A2R9BGU7
SRSF3
100
LLPS-Pap-2816
ENSPPAG00000028357.1
A0A2R9A095
SRSF4
101
LLPS-Pap-0358
ENSPPAG00000017907.1
A0A2R8ZN62
SRSF7
102
LLPS-Pap-3167
ENSPPAG00000034420.1
A0A2R9AZI3
SRSF9
103
LLPS-Pap-2559
ENSPPAG00000040541.1
A0A2R9C4Z8
STAT3
104
LLPS-Pap-3713
ENSPPAG00000029436.1
A0A2R9A6J2
TAP1
105
LLPS-Pap-1227
ENSPPAG00000030589.1
A0A2R9AE23
TGFBR1
106
LLPS-Pap-4100
ENSPPAG00000034619.1
A0A2R9B6E8
TRA2B
107
LLPS-Pap-0633
ENSPPAG00000040361.1
A0A2R9C2M3
TTC14
108
LLPS-Pap-1580
ENSPPAG00000039782.1
A0A2R9BWJ7
U2AF2
109
LLPS-Pap-2689
ENSPPAG00000029699.1
A0A2R9AC81
XPO1
110
LLPS-Pap-0161
ENSPPAG00000041315.1
A0A2R9CG49
YTHDC1
111
LLPS-Pap-1494
ENSPPAG00000039060.1
A0A2R9BSR5
ZC3H11A
112
LLPS-Pap-1012
ENSPPAG00000024703.1
A0A2R8ZQT9
ZNF106
113
LLPS-Pap-1728
ENSPPAG00000024198.1
A0A2R8ZND7
ZNF131
114
LLPS-Pap-0484
ENSPPAG00000035884.1
A0A2R9B8U9
ZNF688