Otolemur garnettii      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 111 genes.  Reviewed (0 or Unreviewed (111

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Otg-0390
ENSOGAG00000027672.1
H0XWK2
2
LLPS-Otg-0429
ENSOGAG00000032783.1
H0XN06
3
LLPS-Otg-0511
ENSOGAG00000028850.1
H0XSR3
4
LLPS-Otg-0694
ENSOGAG00000012785.2
H0X7Q6
5
LLPS-Otg-0900
ENSOGAG00000006237.2
H0WTS0
6
LLPS-Otg-1505
ENSOGAG00000000267.2
H0WG26
7
LLPS-Otg-1922
ENSOGAG00000024501.1
H0Y0J5
8
LLPS-Otg-2078
ENSOGAG00000030345.1
H0XTR1
9
LLPS-Otg-2384
ENSOGAG00000009095.2
H0WZV5
10
LLPS-Otg-2749
ENSOGAG00000015244.2
H0XCW0
11
LLPS-Otg-3229
ENSOGAG00000011374.2
H0X4P8
12
LLPS-Otg-3989
ENSOGAG00000015951.2
H0XEC0
13
LLPS-Otg-4549
ENSOGAG00000000820.2
H0WH98
14
LLPS-Otg-0257
ENSOGAG00000007933.2
H0WXD0
AGO2
15
LLPS-Otg-3769
ENSOGAG00000011851.2
H0X5N3
AKAP17A
16
LLPS-Otg-2317
ENSOGAG00000012409.2
H0X6U5
ALYREF
17
LLPS-Otg-3055
ENSOGAG00000007053.2
H0WVH5
ANXA10
18
LLPS-Otg-1048
ENSOGAG00000009952.2
H0X1L9
ANXA2
19
LLPS-Otg-1031
ENSOGAG00000000171.2
H0WFW3
ATR
20
LLPS-Otg-0073
ENSOGAG00000007544.2
H0WWJ1
BCAS2
21
LLPS-Otg-0381
ENSOGAG00000009770.2
H0X186
C9orf78
22
LLPS-Otg-0334
ENSOGAG00000016835.2
H0XG81
CARM1
23
LLPS-Otg-1181
ENSOGAG00000034486.1
H0XWE6
CASC3
24
LLPS-Otg-3871
ENSOGAG00000011592.2
H0X544
CCNL1
25
LLPS-Otg-0138
ENSOGAG00000008211.2
H0WXZ4
CDC5L
26
LLPS-Otg-0211
ENSOGAG00000009963.2
H0X1M2
CDK1
27
LLPS-Otg-3034
ENSOGAG00000010748.2
H0X3D0
CDK7
28
LLPS-Otg-1145
ENSOGAG00000008105.2
H0WXQ5
CDK9
29
LLPS-Otg-3552
ENSOGAG00000002429.2
H0WKQ1
CDKL5
30
LLPS-Otg-0539
ENSOGAG00000009589.2
H0X0V7
CLK2
31
LLPS-Otg-3390
ENSOGAG00000015465.2
H0XDB3
COP1
32
LLPS-Otg-0542
ENSOGAG00000011494.2
H0X4X9
CTNNBL1
33
LLPS-Otg-1036
ENSOGAG00000004851.2
H0WQT2
DGCR8
34
LLPS-Otg-0866
ENSOGAG00000014022.2
H0XAB8
DNAJB1
35
LLPS-Otg-1137
ENSOGAG00000000528.2
H0WGL6
DNAJC17
36
LLPS-Otg-4445
ENSOGAG00000025150.1
H0XYC0
DYRK3
37
LLPS-Otg-1703
ENSOGAG00000004702.2
H0WQH5
EGF
38
LLPS-Otg-2771
ENSOGAG00000029388.1
H0XMX2
ERH
39
LLPS-Otg-0659
ENSOGAG00000009904.2
H0X1I6
EZH1
40
LLPS-Otg-1526
ENSOGAG00000005765.2
H0WST1
FAM76B
41
LLPS-Otg-4087
ENSOGAG00000025465.1
H0XXI3
FAM83H
42
LLPS-Otg-1639
ENSOGAG00000000677.2
H0WGZ0
FANCD2
43
LLPS-Otg-4300
ENSOGAG00000008142.2
H0WXT7
FANCI
44
LLPS-Otg-0769
ENSOGAG00000008341.2
H0WY99
FBXL18
45
LLPS-Otg-0754
ENSOGAG00000014695.2
H0XBR9
FGFR1
46
LLPS-Otg-2206
ENSOGAG00000014706.2
H0XBS2
FRMD8
47
LLPS-Otg-1128
ENSOGAG00000011888.2
H0X5R1
FYTTD1
48
LLPS-Otg-2531
ENSOGAG00000012651.2
H0X7F0
GLI3
49
LLPS-Otg-2755
ENSOGAG00000006019.2
H0WTC1
GSK3B
50
LLPS-Otg-0851
ENSOGAG00000016112.2
H0XEP0
HIF1A
51
LLPS-Otg-3581
ENSOGAG00000008187.2
H0WXX2
HIF3A
52
LLPS-Otg-1448
ENSOGAG00000034445.1
H0XNK6
HIPK2
53
LLPS-Otg-2199
ENSOGAG00000015353.2
H0XD32
HNRNPA2B1
54
LLPS-Otg-0362
ENSOGAG00000007478.2
H0WWD7
HNRNPK
55
LLPS-Otg-4422
ENSOGAG00000009898.2
H0X1I3
HSPH1
56
LLPS-Otg-2914
ENSOGAG00000016199.2
H0XEV9
IVNS1ABP
57
LLPS-Otg-0283
ENSOGAG00000034921.1
H0XJN0
LOC100952023
58
LLPS-Otg-1718
ENSOGAG00000013328.2
H0X8V0
MAGOH
59
LLPS-Otg-1305
ENSOGAG00000034374.1
H0XZM5
NAGK
60
LLPS-Otg-0643
ENSOGAG00000031136.1
H0XLZ6
NOSIP
61
LLPS-Otg-3812
ENSOGAG00000017023.2
H0XGM8
NR5A1
62
LLPS-Otg-0586
ENSOGAG00000013071.2
H0X8B7
NUAK2
63
LLPS-Otg-1324
ENSOGAG00000008901.2
H0WZG5
NXF1
64
LLPS-Otg-3258
ENSOGAG00000034171.1
H0XK07
OGG1
65
LLPS-Otg-2066
ENSOGAG00000004975.2
H0WR19
P2RY12
66
LLPS-Otg-0436
ENSOGAG00000008710.2
H0WZ22
PABPN1
67
LLPS-Otg-0177
ENSOGAG00000028946.1
H0XQQ0
PCBP1
68
LLPS-Otg-1169
ENSOGAG00000011310.2
H0X4J8
PLRG1
69
LLPS-Otg-0486
ENSOGAG00000029611.1
H0XJX9
PPIG
70
LLPS-Otg-0244
ENSOGAG00000016756.2
H0XG24
PRPF19
71
LLPS-Otg-0879
ENSOGAG00000000382.2
H0WGA7
PSMA3
72
LLPS-Otg-1824
ENSOGAG00000012643.2
H0X7E2
PSPC1
73
LLPS-Otg-0775
ENSOGAG00000008036.2
H0WXK4
PTBP1
74
LLPS-Otg-1706
ENSOGAG00000004147.2
H0WPA5
RAPGEF1
75
LLPS-Otg-1723
ENSOGAG00000015687.2
H0XDU3
RBM17
76
LLPS-Otg-1027
ENSOGAG00000014794.2
H0XBY4
RBM23
77
LLPS-Otg-0865
ENSOGAG00000001693.2
H0WJ59
SARNP
78
LLPS-Otg-0515
ENSOGAG00000016196.2
B5SNK8
SF1
79
LLPS-Otg-2003
ENSOGAG00000012931.2
H0X818
SF3A1
80
LLPS-Otg-2438
ENSOGAG00000033389.1
H0XT50
SF3A2
81
LLPS-Otg-0953
ENSOGAG00000012107.2
H0X675
SF3A3
82
LLPS-Otg-0242
ENSOGAG00000027710.1
H0XNP6
SFPQ
83
LLPS-Otg-3890
ENSOGAG00000014217.2
H0XAS3
SMAD3
84
LLPS-Otg-0739
ENSOGAG00000006879.2
H0WV46
SNRNP200
85
LLPS-Otg-4752
ENSOGAG00000011301.2
H0X4J0
SNRNP35
86
LLPS-Otg-0217
ENSOGAG00000029310.1
H0XUM5
SNRNP70
87
LLPS-Otg-0487
ENSOGAG00000002864.2
H0WLM2
SNRPA
88
LLPS-Otg-0004
ENSOGAG00000016898.2
H0XGC9
SNRPA1
89
LLPS-Otg-1366
ENSOGAG00000015146.2
H0XCN4
SNRPB2
90
LLPS-Otg-4451
ENSOGAG00000012793.2
H0X7R0
SPOP
91
LLPS-Otg-2938
ENSOGAG00000032989.1
H0Y070
SRRM2
92
LLPS-Otg-3359
ENSOGAG00000025950.1
H0XX12
SRSF1
93
LLPS-Otg-0631
ENSOGAG00000015374.2
H0XD46
SRSF10
94
LLPS-Otg-4021
ENSOGAG00000003392.2
H0WMP5
SRSF11
95
LLPS-Otg-0441
ENSOGAG00000028335.1
H0XV56
SRSF2
96
LLPS-Otg-0530
ENSOGAG00000000502.2
H0WGJ8
SRSF3
97
LLPS-Otg-1898
ENSOGAG00000015515.2
H0XDF0
SRSF4
98
LLPS-Otg-0926
ENSOGAG00000010169.2
H0X234
SRSF7
99
LLPS-Otg-0393
ENSOGAG00000003852.2
H0WNL8
SRSF9
100
LLPS-Otg-4687
ENSOGAG00000001517.2
H0WIS0
STAT3
101
LLPS-Otg-2101
ENSOGAG00000013836.2
H0X9X6
TAP1
102
LLPS-Otg-0714
ENSOGAG00000004163.2
H0WPB6
TGFBR1
103
LLPS-Otg-2985
ENSOGAG00000005386.2
H0WRY6
TRA2B
104
LLPS-Otg-2283
ENSOGAG00000006895.2
H0WV56
TTC14
105
LLPS-Otg-1051
ENSOGAG00000007206.2
H0WVU7
U2AF2
106
LLPS-Otg-1677
ENSOGAG00000004335.2
H0WPP2
U2SURP
107
LLPS-Otg-0351
ENSOGAG00000000143.2
H0WFU2
XPO1
108
LLPS-Otg-2911
ENSOGAG00000003362.2
H0WMM2
YTHDC1
109
LLPS-Otg-0589
ENSOGAG00000000243.2
H0WG12
ZC3H11A
110
LLPS-Otg-1141
ENSOGAG00000028175.1
H0XT70
ZNF106
111
LLPS-Otg-2547
ENSOGAG00000033699.1
H0XRM6
ZNF688