Oryza sativa      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 48 genes.  Reviewed (0 or Unreviewed (48

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Ors-0877
Os01g0550000
Q5JK84
AIP2
2
LLPS-Ors-2242
Os07g0671700
Q7XI75
CARM1
3
LLPS-Ors-0460
Os06g0275500
Q5VN06
CLF
4
LLPS-Ors-1667
Os06g0127800
Q9LWU9
DLT
5
LLPS-Ors-0130
Os03g0263500
Q10NP6
LOC_Os03g15700
6
LLPS-Ors-0014
Os03g0270200
Q10NF9
LOC_Os03g16369
7
LLPS-Ors-0880
Os03g0278300
Q10N90
LOC_Os03g17010
8
LLPS-Ors-1003
Os03g0279900
Q10N73
LOC_Os03g17170
9
LLPS-Ors-1163
Os03g0339100
Q10LQ8
LOC_Os03g21990
10
LLPS-Ors-1986
Os03g0363800
Q10L03
LOC_Os03g24890
11
LLPS-Ors-0715
Os03g0374100
Q7Y163
LOC_Os03g25720
12
LLPS-Ors-0554
Os03g0717600
Q10DW3
LOC_Os03g50850
13
LLPS-Ors-1775
Os03g0841800
Q6AVQ3
LOC_Os03g62500
14
LLPS-Ors-2154
Os10g0115600
Q33BE1
LOC_Os10g02630
15
LLPS-Ors-2079
Os12g0572400
Q2QNB0
LOC_Os12g38430
16
LLPS-Ors-1844
Os04g0440000
Q7XQG4
OJ000114_01.13
17
LLPS-Ors-0043
Os01g0239100
Q9FTT4
Os01g0239100
18
LLPS-Ors-1523
Os01g0526100
Q8L460
Os01g0526100
19
LLPS-Ors-0685
Os01g0837900
Q0JHX2
Os01g0837900
20
LLPS-Ors-0344
Os01g0959000
Q5JN45
Os01g0959000
21
LLPS-Ors-0500
Os02g0179900
A0A0P0VFG2
Os02g0179900
22
LLPS-Ors-0767
Os02g0245000
Q6EUD5
Os02g0245000
23
LLPS-Ors-1353
Os02g0478900
A0A0P0VIZ4
Os02g0478900
24
LLPS-Ors-0308
Os02g0552600
A0A0P0VKE7
Os02g0552600
25
LLPS-Ors-1465
Os02g0831300
Q6K975
Os02g0831300
26
LLPS-Ors-1073
Os03g0298800
Q10MR0
Os03g0298800
27
LLPS-Ors-1884
Os03g0341200
A0A0P0VX92
Os03g0341200
28
LLPS-Ors-2391
Os03g0826400
Q10B98
Os03g0826400
29
LLPS-Ors-1616
Os03g0858100
Q84M87
Os03g0858100
30
LLPS-Ors-2121
Os04g0348300
A0A0P0W9C3
Os04g0348300
31
LLPS-Ors-0624
Os04g0499200
Q0JC05
Os04g0499200
32
LLPS-Ors-0194
Os05g0154800
Q0DKM4
Os05g0154800
33
LLPS-Ors-0735
Os05g0364600
A0A0P0WLH4
Os05g0364600
34
LLPS-Ors-0711
Os06g0167000
A0A0P0WSW9
Os06g0167000
35
LLPS-Ors-1717
Os06g0724700
Q5Z987
Os06g0724700
36
LLPS-Ors-0888
Os07g0147700
Q6ZF69
Os07g0147700
37
LLPS-Ors-2063
Os07g0154400
A0A0P0X2T8
Os07g0154400
38
LLPS-Ors-0253
Os08g0159900
Q84UQ1
Os08g0159900
39
LLPS-Ors-1967
Os09g0455400
A0A0P0XN27
Os09g0455400
40
LLPS-Ors-0232
Os09g0513700
Q69IN4
Os09g0513700
41
LLPS-Ors-0555
Os02g0757900
Q6Z7V3
P0471A11.31-2
42
LLPS-Ors-1397
Os07g0623300
Q8LHL0
P0524E08.112
43
LLPS-Ors-0323
Os06g0724600
Q5Z990
P0548E04.4-1
44
LLPS-Ors-2133
Os01g0811100
Q9LSU0
PAG1
45
LLPS-Ors-1851
Os02g0771100
Q6ZHH4
PPS
46
LLPS-Ors-1383
Os10g0466300
Q9AV81
PRP19
47
LLPS-Ors-0390
Os02g0789400
Q6K4N0
RSZP21
48
LLPS-Ors-0574
Os11g0636900
Q2R0Q1
U2AF65A