Oryza brachyantha      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 54 genes.  Reviewed (0 or Unreviewed (54

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Orbr-0072
OB05G23190
J3M6U5
2
LLPS-Orbr-0164
OB09G10740
J3MVP6
3
LLPS-Orbr-0213
OB02G10580
J3L8U1
4
LLPS-Orbr-0251
OB03G39040
J3LS78
5
LLPS-Orbr-0282
OB05G10480
J3M374
6
LLPS-Orbr-0593
OB02G45240
J3LIQ7
7
LLPS-Orbr-0633
OB07G12640
J3MIN2
8
LLPS-Orbr-0656
OB11G25520
J3N9R6
9
LLPS-Orbr-0741
OB01G27790
J3L0M3
10
LLPS-Orbr-0748
OB07G28210
J3MN39
11
LLPS-Orbr-0979
OB04G20750
J3LY50
12
LLPS-Orbr-1089
OB02G19170
J3LBA0
13
LLPS-Orbr-1102
OB01G30660
J3L1G0
14
LLPS-Orbr-1319
OB03G26590
J3LNN3
15
LLPS-Orbr-1510
OB06G35600
J3MHR6
16
LLPS-Orbr-1615
OB09G22870
J3MZ58
17
LLPS-Orbr-1684
OB02G13110
J3L9J4
18
LLPS-Orbr-1707
OB02G15360
J3LA69
19
LLPS-Orbr-2006
OB03G26510
J3LNM5
20
LLPS-Orbr-2124
OB03G22590
J3LMI3
21
LLPS-Orbr-2156
OB03G28350
J3LP59
22
LLPS-Orbr-2258
OB03G27750
J3LNZ9
23
LLPS-Orbr-0624
OB03G48680
J3LUZ2
102699488
24
LLPS-Orbr-1326
OB05G21570
J3M6D3
102701725
25
LLPS-Orbr-2111
OB02G40960
J3LHH9
102702351
26
LLPS-Orbr-0198
OB08G13860
J3MQK7
102702680
27
LLPS-Orbr-1001
OB04G16480
J3LWX3
102704048
28
LLPS-Orbr-1866
OB07G31310
J3MNZ9
102704826
29
LLPS-Orbr-0312
OB02G31070
J3LEP0
102705044
30
LLPS-Orbr-1589
OB06G19800
D4N3V9
102706390
31
LLPS-Orbr-0126
OB03G38040
J3LRX8
102708141
32
LLPS-Orbr-0424
OB01G28900
J3L0Y4
102708474
33
LLPS-Orbr-1336
OB03G47690
J3LUP3
102708785
34
LLPS-Orbr-0344
OB04G31650
J3M190
102710301
35
LLPS-Orbr-0193
OB05G28590
J3M8D5
102710407
36
LLPS-Orbr-0751
OB09G19100
J3MY31
102711012
37
LLPS-Orbr-1383
OB06G14120
J3MBL8
102711162
38
LLPS-Orbr-2162
OB07G10160
J3MHY5
102711901
39
LLPS-Orbr-2367
OB02G19650
J3LBE8
102712049
40
LLPS-Orbr-0316
OB04G36130
J3M2I8
102712075
41
LLPS-Orbr-1708
OB10G10670
J3N0L9
102713215
42
LLPS-Orbr-2184
OB02G40110
J3LH94
102713444
43
LLPS-Orbr-1018
OB0319G10010
J3LIV1
102715539
44
LLPS-Orbr-1467
OB10G19940
J3N396
102716627
45
LLPS-Orbr-0915
OB12G19610
J3NDA3
102716639
46
LLPS-Orbr-0241
OB03G46540
J3LUC8
102716667
47
LLPS-Orbr-0022
OB01G19690
J3KYB3
102717190
48
LLPS-Orbr-0662
OB02G42210
J3LHV4
102718804
49
LLPS-Orbr-1176
OB06G17190
J3MCH5
102718843
50
LLPS-Orbr-1052
OB02G27830
J3LDR6
102719560
51
LLPS-Orbr-1567
OB03G22730
J3LMJ7
102719846
52
LLPS-Orbr-1224
OB01G20540
J3KYJ8
102721694
53
LLPS-Orbr-0115
OB03G21670
J3LM91
102721908
54
LLPS-Orbr-1806
OB07G13850
J3MJ03
102722229