Oreochromis niloticus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 102 genes.  Reviewed (0 or Unreviewed (102

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Orn-0062
ENSONIG00000007374.1
I3JKA8
2
LLPS-Orn-0102
ENSONIG00000002642.1
I3J369
3
LLPS-Orn-0110
ENSONIG00000002969.1
I3J4C8
4
LLPS-Orn-0141
ENSONIG00000017737.1
I3KML8
5
LLPS-Orn-0154
ENSONIG00000006259.1
I3JG95
6
LLPS-Orn-0222
ENSONIG00000011401.1
I3JZQ4
7
LLPS-Orn-0293
ENSONIG00000000899.1
I3IWZ7
8
LLPS-Orn-0313
ENSONIG00000002325.1
I3J218
9
LLPS-Orn-0369
ENSONIG00000009442.1
I3JSM1
10
LLPS-Orn-0402
ENSONIG00000013307.1
I3K6J1
11
LLPS-Orn-0475
ENSONIG00000008112.1
I3JMX3
12
LLPS-Orn-0497
ENSONIG00000006786.1
I3JI71
13
LLPS-Orn-0563
ENSONIG00000008723.1
I3JQ20
14
LLPS-Orn-0571
ENSONIG00000011838.1
I3K1B0
15
LLPS-Orn-0586
ENSONIG00000007822.1
I3JLW0
16
LLPS-Orn-1057
ENSONIG00000012559.1
I3K3W6
17
LLPS-Orn-1117
ENSONIG00000012139.1
I3K2E1
18
LLPS-Orn-1171
ENSONIG00000018025.1
I3KNL9
19
LLPS-Orn-1409
ENSONIG00000005909.1
I3JEZ6
20
LLPS-Orn-1418
ENSONIG00000018929.1
I3KRU3
21
LLPS-Orn-1638
ENSONIG00000018938.1
I3KRV4
22
LLPS-Orn-1767
ENSONIG00000005565.1
I3JDQ6
23
LLPS-Orn-1781
ENSONIG00000009214.1
I3JRU4
24
LLPS-Orn-1801
ENSONIG00000019698.1
I3KUJ6
25
LLPS-Orn-1815
ENSONIG00000017261.1
I3KKX5
26
LLPS-Orn-2003
ENSONIG00000009337.1
I3JS90
27
LLPS-Orn-2028
ENSONIG00000003165.1
I3J527
28
LLPS-Orn-2068
ENSONIG00000000770.1
I3IWI2
29
LLPS-Orn-2114
ENSONIG00000003775.1
I3J7A8
30
LLPS-Orn-2265
ENSONIG00000013271.1
I3K6E7
31
LLPS-Orn-2292
ENSONIG00000013160.1
I3K607
32
LLPS-Orn-2411
ENSONIG00000009648.1
I3JTC6
33
LLPS-Orn-2477
ENSONIG00000012793.1
I3K4Q9
34
LLPS-Orn-2503
ENSONIG00000010383.1
I3JW03
35
LLPS-Orn-2555
ENSONIG00000010296.1
I3JVQ3
36
LLPS-Orn-2809
ENSONIG00000004860.1
I3JB75
37
LLPS-Orn-2872
ENSONIG00000003747.1
I3J773
38
LLPS-Orn-3324
ENSONIG00000005540.1
I3JDM2
39
LLPS-Orn-3341
ENSONIG00000008265.1
I3JNF7
40
LLPS-Orn-3654
ENSONIG00000009995.1
I3JUM7
41
LLPS-Orn-3777
ENSONIG00000001112.1
I3IXR8
42
LLPS-Orn-2513
ENSONIG00000004245.1
I3J904
akap17a
43
LLPS-Orn-1166
ENSONIG00000019434.1
I3KTL7
alyref
44
LLPS-Orn-1320
ENSONIG00000003339.1
I3J5R3
anxa2
45
LLPS-Orn-0321
ENSONIG00000009234.1
I3JRW9
bcas2
46
LLPS-Orn-2226
ENSONIG00000001420.1
I3IYU8
cdc5l
47
LLPS-Orn-2650
ENSONIG00000009163.1
I3JRM7
cdk1
48
LLPS-Orn-3395
ENSONIG00000013709.1
I3K805
cdk7
49
LLPS-Orn-1847
ENSONIG00000012601.1
I3K416
cdk9
50
LLPS-Orn-3370
ENSONIG00000003161.1
I3J522
CDKL5 (1 of many)
51
LLPS-Orn-3211
ENSONIG00000016668.1
I3KIQ2
cop1
52
LLPS-Orn-1463
ENSONIG00000011528.1
I3K069
csnk1a1
53
LLPS-Orn-0658
ENSONIG00000017282.1
I3KL01
ddx46
54
LLPS-Orn-0136
ENSONIG00000011072.1
I3JYJ3
dgcr8
55
LLPS-Orn-3511
ENSONIG00000016394.1
I3KHQ1
dnajb1
56
LLPS-Orn-0851
ENSONIG00000000382.1
I3IV42
ERH
57
LLPS-Orn-0151
ENSONIG00000001211.1
I3IY40
EZH1
58
LLPS-Orn-1520
ENSONIG00000004320.1
I3J9A6
fam76b
59
LLPS-Orn-0973
ENSONIG00000002496.1
I3J2N7
fam83h
60
LLPS-Orn-3321
ENSONIG00000018995.1
I3KS20
fancd2
61
LLPS-Orn-3447
ENSONIG00000014637.1
I3KBD2
fanci
62
LLPS-Orn-2439
ENSONIG00000011012.1
I3JYB1
FGFR1
63
LLPS-Orn-1983
ENSONIG00000001744.1
I3IZZ5
frmd8
64
LLPS-Orn-2653
ENSONIG00000010717.1
I3JX78
fyttd1
65
LLPS-Orn-3138
ENSONIG00000006298.1
I3JGE9
gli3
66
LLPS-Orn-0286
ENSONIG00000014396.1
I3KAF5
gsk3b
67
LLPS-Orn-2705
ENSONIG00000020112.1
I3KW39
hif1a
68
LLPS-Orn-0583
ENSONIG00000010350.1
I3JVW7
ilf2
69
LLPS-Orn-3852
ENSONIG00000011674.1
I3K0Q4
lg12h9orf78
70
LLPS-Orn-0951
ENSONIG00000003584.1
I3J6M0
LOC100692921
71
LLPS-Orn-0893
ENSONIG00000019627.1
I3KUB5
LOC100693928
72
LLPS-Orn-1873
ENSONIG00000018907.1
I3KRR2
LOC100694805
73
LLPS-Orn-0161
ENSONIG00000007565.1
I3JKZ3
LOC100706673
74
LLPS-Orn-0066
ENSONIG00000010747.1
I3JXB7
LOC100708747
75
LLPS-Orn-3517
ENSONIG00000009682.1
I3JTG5
LOC100708876
76
LLPS-Orn-0381
ENSONIG00000019976.1
I3KVL1
LOC100710640
77
LLPS-Orn-1514
ENSONIG00000004740.1
I3JAS9
LOC100711348
78
LLPS-Orn-1044
ENSONIG00000019938.1
I3KVG6
luc7l
79
LLPS-Orn-1627
ENSONIG00000013572.1
I3K7H1
nagk
80
LLPS-Orn-2914
ENSONIG00000020497.1
I3KXF6
nono
81
LLPS-Orn-0731
ENSONIG00000010189.1
I3JVB7
plrg1
82
LLPS-Orn-1243
ENSONIG00000019494.1
I3KTU4
pnn
83
LLPS-Orn-2427
ENSONIG00000004880.1
I3JB97
prpf19
84
LLPS-Orn-0544
ENSONIG00000008153.1
I3JN21
prpf8
85
LLPS-Orn-3329
ENSONIG00000011031.1
I3JYD3
psma3
86
LLPS-Orn-3101
ENSONIG00000012010.1
I3K1X3
pspc1
87
LLPS-Orn-0056
ENSONIG00000013963.1
I3K8V4
rbmx2
88
LLPS-Orn-3188
ENSONIG00000016523.1
I3KI63
sarnp
89
LLPS-Orn-0577
ENSONIG00000010848.1
I3JXP9
sf3a1
90
LLPS-Orn-1398
ENSONIG00000010198.1
I3JVC8
sf3a2
91
LLPS-Orn-2067
ENSONIG00000013758.1
I3K862
sf3b1
92
LLPS-Orn-2108
ENSONIG00000010714.1
I3JX75
snrnp200
93
LLPS-Orn-2200
ENSONIG00000021361.1
I3KZW6
snrnp35
94
LLPS-Orn-1224
ENSONIG00000003761.1
I3J792
snrpa
95
LLPS-Orn-3217
ENSONIG00000011587.1
I3K0E8
SPOP (1 of many)
96
LLPS-Orn-2402
ENSONIG00000016315.1
I3KHE6
SRSF10
97
LLPS-Orn-1475
ENSONIG00000020247.1
I3KWL8
srsf6
98
LLPS-Orn-0517
ENSONIG00000001148.1
I3IXW3
stat3
99
LLPS-Orn-0486
ENSONIG00000012189.1
I3K2K9
sumo1
100
LLPS-Orn-2058
ENSONIG00000009025.1
I3JR56
TRA2B
101
LLPS-Orn-2762
ENSONIG00000000418.1
I3IV91
znf106
102
LLPS-Orn-4076
ENSONIG00000015187.1
I3KDC1
znf131