Musa acuminata      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 53 genes.  Reviewed (0 or Unreviewed (53

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Mua-0009
GSMUA_Achr9G23340_001
M0U2U3
2
LLPS-Mua-0112
GSMUA_Achr3G29700_001
M0SIY6
3
LLPS-Mua-0118
GSMUA_Achr4G16510_001
M0SPG5
4
LLPS-Mua-0128
GSMUA_Achr4G28550_001
M0SSW7
5
LLPS-Mua-0387
GSMUA_Achr10G02880_001
M0REW5
6
LLPS-Mua-0512
GSMUA_Achr1G26290_001
M0S386
7
LLPS-Mua-0550
GSMUA_Achr2G05230_001
M0S5B4
8
LLPS-Mua-0557
GSMUA_Achr11G26260_001
M0RVK6
9
LLPS-Mua-0567
GSMUA_Achr7G08090_001
M0TFP9
10
LLPS-Mua-0568
GSMUA_Achr10G00800_001
M0REA7
11
LLPS-Mua-0589
GSMUA_Achr3G18370_001
M0SFQ3
12
LLPS-Mua-0626
GSMUA_Achr2G15900_001
M0S8D1
13
LLPS-Mua-0656
GSMUA_Achr8G33270_001
M0TVS9
14
LLPS-Mua-0759
GSMUA_Achr11G11910_001
M0RRH1
15
LLPS-Mua-0822
GSMUA_Achr3G26010_001
M0SHW7
16
LLPS-Mua-0961
GSMUA_AchrUn_randomG13060_001
M0U8R5
17
LLPS-Mua-1013
GSMUA_Achr4G12740_001
M0SND9
18
LLPS-Mua-1038
GSMUA_Achr1G17900_001
M0S0U8
19
LLPS-Mua-1355
GSMUA_Achr11G15840_001
M0RSL4
20
LLPS-Mua-1424
GSMUA_Achr11G15830_001
M0RSL3
21
LLPS-Mua-1500
GSMUA_Achr6G15310_001
M0T779
22
LLPS-Mua-1555
GSMUA_Achr3G09020_001
M0SD19
23
LLPS-Mua-1561
GSMUA_Achr8G31670_001
M0TVB9
24
LLPS-Mua-1642
GSMUA_Achr10G21130_001
M0RK38
25
LLPS-Mua-1652
GSMUA_Achr5G25100_001
M0T1I5
26
LLPS-Mua-1660
GSMUA_Achr3G20130_001
M0SG79
27
LLPS-Mua-1692
GSMUA_Achr10G01850_001
M0REL2
28
LLPS-Mua-1936
GSMUA_Achr11G05540_001
M0RPN4
29
LLPS-Mua-1949
GSMUA_Achr4G22860_001
M0SR98
30
LLPS-Mua-2115
GSMUA_Achr8G04030_001
M0TMF6
31
LLPS-Mua-2305
GSMUA_Achr1G23750_001
M0S2I2
32
LLPS-Mua-1074
GSMUA_Achr10G19090_001
M0RJI4
103968647
33
LLPS-Mua-0821
GSMUA_Achr10G22410_001
M0RKG6
103968955
34
LLPS-Mua-0093
GSMUA_Achr2G02230_001
M0S4G4
103969937
35
LLPS-Mua-1031
GSMUA_Achr11G02530_001
M0RNT3
103970233
36
LLPS-Mua-1106
GSMUA_Achr11G14310_001
M0RS61
103971413
37
LLPS-Mua-0991
GSMUA_AchrUn_randomG21870_001
M0UB95
103974744
38
LLPS-Mua-0895
GSMUA_Achr1G08680_001
M0RY76
103978456
39
LLPS-Mua-0814
GSMUA_Achr4G09230_001
M0SME0
103980992
40
LLPS-Mua-2040
GSMUA_Achr1G17340_001
M0S0P2
103983258
41
LLPS-Mua-0270
GSMUA_Achr5G08970_001
M0SWX6
103984302
42
LLPS-Mua-1260
GSMUA_Achr5G26620_001
M0T1Y7
103986320
43
LLPS-Mua-0614
GSMUA_Achr6G10340_001
M0T5T3
103987453
44
LLPS-Mua-0875
GSMUA_Achr7G05850_001
M0TF25
103990516
45
LLPS-Mua-0838
GSMUA_Achr7G02600_001
M0TE50
103990824
46
LLPS-Mua-2194
GSMUA_Achr7G17290_001
M0TIB6
103992061
47
LLPS-Mua-2193
GSMUA_Achr8G09080_001
M0TNW1
103993465
48
LLPS-Mua-1845
GSMUA_Achr8G13140_001
M0TQ17
103994431
49
LLPS-Mua-2261
GSMUA_Achr8G23960_001
M0TT49
103995160
50
LLPS-Mua-0092
GSMUA_Achr8G33200_001
M0TVS2
103995631
51
LLPS-Mua-1553
GSMUA_Achr9G12650_001
M0TZS4
103997740
52
LLPS-Mua-0840
GSMUA_Achr9G16330_001
M0U0U0
103998170
53
LLPS-Mua-1433
GSMUA_Achr9G21660_001
M0U2C5
103998621